[Rd] R v2.11.0: HTML package index broken(?)
Hi, in R v2.11.0 (2009-10-15 r50085) on Windows Vista the package index and its links for the package installed in the user-specific library path are all broken, e.g. In http://127.0.0.1:28251/doc/html/packages.html I get: Packages in C:\Users\hb\R\win-library\2.11 C:\Users\hb/R/win-library/2.11/abind/DESCRIPTION-- Title is missing -- [...] Packages in the standard library baseThe R Base Package [...] and the links are of format: http://127.0.0.1:28251/library/C:%5CUsers%5Chb/R/win-library/2.11/abind/DESCRIPTION/html/00Index.html It seems like they should be of format: http://127.0.0.1:28251/library/abind/html/00Index.html /Henrik The above and below is when using Rterm --vanilla. .libPaths() [1] C:\\Users\\hb/R/win-library/2.11 C:/PROGRA~1/R/R-2.11.0dev/library sessionInfo() R version 2.11.0 Under development (unstable) (2009-10-15 r50085) i386-pc-mingw32 locale: [1] LC_COLLATE=English_United States.1252 [2] LC_CTYPE=English_United States.1252 [3] LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C [5] LC_TIME=English_United States.1252 attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] tools_2.11.0 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] forwarded: bug (?) in cut.POSIXt with breaks=integer
On Fri, 16 Oct 2009 16:12:40 +0200, Ben Bolker bol...@ufl.edu wrote: PS a parallel problem seems to occur in cut.Date ... cut.POSIXt and cut.Date both allow breaks to be a single integer specifying the number of breaks, and both call if(is.null(labels)) levels(res) - as.character(breaks[-length(breaks)]) near the end of the function, which breaks (so to speak) if length(breaks)!=length(levels(res))-1 I could keep working on a patch if requested, but probably won't otherwise. I believe it's an important issue. In plotting long time series grouping is indispensable. Thank you, Ben, for working on that. May I take this opportunity and propose an additional argument by to cut function. This would make cut similar to seq and cut.POSIXt (in the latter, intervals as 30 s are allowed in breaks specification). Conceptually it's often simpler to think in terms of the length of interval than the number of intervals in breaks. Thanks, Vitalie. Ben Bolker __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Goto BLAS
I was on the Goto BLAS maillist yesterday, asking some question about relative speed/performance/tuning of Goto BLAS and (specifically) R. I received a reply from Kazushige Goto (the developer and maintainer of Goto BLAS), who as part of his answer to some of my queries made the following comment concerning R, which I pass along to the R development team: By the way, please ask your R developer to rewrite memory allocation function including garbage collection. They give 4 byte offset memory region and never perform well (or it will cause segmentation fault. 4 byte offset is fatal). Since R use complex double precision, memory alignment should be at least 16 bytes... Apparently, Goto has run into some issues with R before. I'll assume that some out there will be able to interpret Goto's comment/suggestion. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] linking to package directories broken in R = 2.10 beta
Dear R developers, some of our packages come with additional programming examples in a directory called /examples which is created from /inst/examples. This directory is linked from the docs (e.g. in inst/doc/index.html): dl dta href=../examples/examples/a: ddSource code of examples /dl Given, that we have a package foo this is resolved to: file:///C:/Programme/R/R-2.9.2/library/foo/examples/ with R = 2.9.2. With R 2.10 beta (R-beta_2009-10-16_r50118.tar.gz) and R-devel (svn rev. 50118) we get: http://127.0.0.1:26383/library/foo/examples/ This is fine, but in contrast to older versions (= 2.9.2) no automatic index is created for the linked directory, so we now get: URL /library/foo/examples/ was not found bu linking to *individual files* (e.g. examples/example.R) works as expected. We can, of course, add manually maintained index files but I would much prefer if a default index would be created for the directory if no index.html is found. I very much enjoy the new help system and would be even more happy if that issue could be fixed. Thomas Petzoldt PS: A minimal reproducible example (foo_1.0.tar.gz) can be provided by mail if required. -- Thomas Petzoldt Technische Universitaet Dresden Institut fuer Hydrobiologiethomas.petzo...@tu-dresden.de 01062 Dresden http://tu-dresden.de/hydrobiologie/ GERMANY __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] (PR#14012)
I think Rscript has a problem running files that have mac encodings
for newline (^M rather than ^J on linux). If I source the file within
R, it works okay:
source('j.R')
[1] MEA_data/sernagor_new/CRX_P7_1.txt
But if I run the file using Rscript on a linux box I get a strange
error message:
$ Rscript --vanilla j.R
Execution halted
The example script j.R is at http://www.damtp.cam.ac.uk/user/sje30/j.R
rather than attaching it here. I don't think there is anything
specific about the script though apart from the line endings.
Stephen
--please do not edit the information below--
Version:
platform = x86_64-pc-linux-gnu
arch = x86_64
os = linux-gnu
system = x86_64, linux-gnu
status =
major = 2
minor = 9.2
year = 2009
month = 08
day = 24
svn rev = 49384
language = R
version.string = R version 2.9.2 (2009-08-24)
Locale:
LC_CTYPE=en_GB.UTF-8;LC_NUMERIC=C;LC_TIME=en_GB.UTF-8;LC_COLLATE=en_GB.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_GB.UTF-8;LC_PAPER=en_GB.UTF-8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.UTF-8;LC_IDENTIFICATION=C
Search Path:
.GlobalEnv, package:stats, package:graphics, package:grDevices, package:utils,
package:datasets, package:methods, Autoloads, package:base
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Re: [Rd] forwarded: bug (?) in cut.POSIXt with breaks=integer
That is usually done with trunc rather than cut since in the case of a
time series we normally don't want a factor result (which is what cut
would give):
trunc(tt, secs)
trunc(tt, mins)
# etc
trunc.POSIXt does not support the 30 secs syntax but trunc.times in
the chron package supports similar functionality:
library(chron)
trunc(as.chron(format(tt)), 00:00:30)
# or relative to GMT
trunc(as.chron(tt)), 00:00:30)
On Thu, Oct 15, 2009 at 1:10 PM, Ben Bolker bol...@ufl.edu wrote:
From: Vitalie S. vitosmail at rambler.ru
Subject: Bug in cut.POSIXt
Newsgroups: gmane.comp.lang.r.general
Date: 2009-10-15 15:47:48 GMT (1 hour and 29 minutes ago)
Hello Everyone,
Before reporting decided to post here first:
tt - structure(c(1254238817, 1254238859, 1254238969, 1254239080), class =
c(POSIXt,
POSIXct),
tzone = )
cut.POSIXt(tt, 2)
#Error in `levels-.factor`(`*tmp*`, value = character(0)) :
# number of levels differs
cut.POSIXt(tt, 2, labels=c(a1, a2))
#[1] a1 a1 a2 a2
#Levels: a1 a2
cut(tt, 2 mins)
#[1] 2009-09-29 17:40:00 2009-09-29 17:40:00 2009-09-29 17:42:00
2009-09-29 17:44:00
#Levels: 2009-09-29 17:40:00 2009-09-29 17:42:00 2009-09-29 17:44:00
sessionInfo()
R version 2.9.2 Patched (2009-09-24 r50069)
i386-pc-mingw32
locale:
LC_COLLATE=English_United States.1252;LC_CTYPE=English_United
States.1252;LC_MONETARY=English_United
States.1252;LC_NUMERIC=C;LC_TIME=English_United States.1252
attached base packages:
[1] stats graphics utils datasets grDevices methods base
Vitalie.
==
I would agree that this is a bug ... this patch gets rid of the error,
but leaves the labels very ugly -- given enough hours I might be able to
figure out how to make the labels nice, but someone else can probably do
it quicker (see comments in code below)
It would probably also be worth adding something like
cut(Dates,2)
around line 5067 of reg-tests-1.R
--- datetime.R 2009-10-15 13:01:15.0 -0400
***
*** 764,770
}
} else stop(invalid specification of 'breaks')
res - cut(unclass(x), unclass(breaks), labels = labels, right =
right, ...)
! if(is.null(labels)) levels(res) -
as.character(breaks[-length(breaks)])
res
}
--- 764,782
}
} else stop(invalid specification of 'breaks')
res - cut(unclass(x), unclass(breaks), labels = labels, right =
right, ...)
! if(is.null(labels)) {
! if (is.numeric(breaks) length(breaks) == 1L)
! levels(res) - as.character(breaks[-length(breaks)])
! } else {
! ## ?? what should happen here?
! ## this version simply leaves the break values
! ## as numeric (and very ugly)
! ## I don't know how to safely convert the breakpoints
! ## back to a character format (e.g.
! ## levels(res) = [1970-01-01 00:00:00,1970-01-01 12:00:00)
! ## instead of [18000,61200)
! }
! }
res
}
--
Ben Bolker
Associate professor, Biology Dep't, Univ. of Florida
bol...@ufl.edu / www.zoology.ufl.edu/bolker
GPG key: www.zoology.ufl.edu/bolker/benbolker-publickey.asc
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Re: [Rd] linking to package directories broken in R = 2.10 beta
Thomas Petzoldt wrote: Dear R developers, some of our packages come with additional programming examples in a directory called /examples which is created from /inst/examples. This directory is linked from the docs (e.g. in inst/doc/index.html): dl dta href=../examples/examples/a: ddSource code of examples /dl Given, that we have a package foo this is resolved to: file:///C:/Programme/R/R-2.9.2/library/foo/examples/ with R = 2.9.2. With R 2.10 beta (R-beta_2009-10-16_r50118.tar.gz) and R-devel (svn rev. 50118) we get: http://127.0.0.1:26383/library/foo/examples/ This is fine, but in contrast to older versions (= 2.9.2) no automatic index is created for the linked directory, so we now get: URL /library/foo/examples/ was not found bu linking to *individual files* (e.g. examples/example.R) works as expected. We can, of course, add manually maintained index files but I would much prefer if a default index would be created for the directory if no index.html is found. By index in R = 2.9.2, you mean the default directory listing produced by the web server, rather than something produced by R, right? The R server does that now if the directory is named doc, but not for an arbitrary path. We are concerned about security: any user on your system who can guess your port number can access your help system, so we want to be sure that such users can't access private files. Duncan Murdoch I very much enjoy the new help system and would be even more happy if that issue could be fixed. Thomas Petzoldt PS: A minimal reproducible example (foo_1.0.tar.gz) can be provided by mail if required. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] linking to package directories broken in R = 2.10 beta
Duncan Murdoch wrote: Thomas Petzoldt wrote: [...] This is fine, but in contrast to older versions (= 2.9.2) no automatic index is created for the linked directory, so we now get: URL /library/foo/examples/ was not found but linking to *individual files* (e.g. examples/example.R) works as expected. We can, of course, add manually maintained index files but I would much prefer if a default index would be created for the directory if no index.html is found. By index in R = 2.9.2, you mean the default directory listing produced by the web server, rather than something produced by R, right? Yes, I mean the default directory listing produced by (most) web servers. The R server does that now if the directory is named doc, but not for an arbitrary path. We are concerned about security: any user on your system who can guess your port number can access your help system, so we want to be sure that such users can't access private files. Hmm, I see and have some tendency to understand that this may be an issue for certain multi-user systems. Looking into the svn log (and compiling R) it appears that the remaining possibilities where also regarded as security issue and are now locked down too. Well, I'm not yet completely convinced that this was a good idea. 1) It does not completely solve security issues; what is so different between the library/foo/doc and library/foo/examples ??? 2) The change will introduce additional work for package authors that used internal links within their packages. I can, of course, reorganize everything below doc, e.g. /library/foo/doc/examples ... but this means that these things are even more hidden. 3) However, according to the changed R-Exts, it was obviously decided that this was necessary, so *I* will do the required reorganization. I hope that other package authors accept this change of the rules too. Nevertheless, thank you very much for the new help system. Thomas P. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] linking to package directories is NOT broken in R = 2.10 beta
When you linked to ../examples/ R was not involved, and what you are seeing is what your browser did with a file:// url. Most browsers will support a wide range of file types, and list directories: but that is not something that was ever (AFAICS) documented to work. The 'issue' is your expectations when creating your own inst/doc/index.html. The only relative links that are supported by the help system are to R package help topics and files, to documentation under R.home(doc) and a limited set of files in a package's 'doc' directory to support its use for vignettes, including the ability to list 'doc' itself (if requested in a particular way). If links to files under pkg/example worked, it was a bug. Because of security concerns over traffic snooping, what you can see through the dynamic help system is intentionally very limited. In fact I suspect they worked for you only because (i) you installed into .Library (ii) you had a file for which text/plain worked (and that is because files that might be in a vignette directory have been checked).. (iii) you fell into a code branch marked '# should not get here' in pre-2.10.0 (but absent in R-devel). The good news is that if you refer to files under the installed 'doc' directory this should work -- subdirectory listings work now in R-devel and will probably be ported to 2.10.0 before release. On Sat, 17 Oct 2009, Thomas Petzoldt wrote: Dear R developers, some of our packages come with additional programming examples in a directory called /examples which is created from /inst/examples. This directory is linked from the docs (e.g. in inst/doc/index.html): dl dta href=../examples/examples/a: ddSource code of examples /dl Given, that we have a package foo this is resolved to: file:///C:/Programme/R/R-2.9.2/library/foo/examples/ with R = 2.9.2. With R 2.10 beta (R-beta_2009-10-16_r50118.tar.gz) and R-devel (svn rev. 50118) we get: http://127.0.0.1:26383/library/foo/examples/ This is fine, but in contrast to older versions (= 2.9.2) no automatic index is created for the linked directory, so we now get: URL /library/foo/examples/ was not found bu linking to *individual files* (e.g. examples/example.R) works as expected. We can, of course, add manually maintained index files but I would much prefer if a default index would be created for the directory if no index.html is found. I very much enjoy the new help system and would be even more happy if that issue could be fixed. Thomas Petzoldt PS: A minimal reproducible example (foo_1.0.tar.gz) can be provided by mail if required. -- Thomas Petzoldt Technische Universitaet Dresden Institut fuer Hydrobiologiethomas.petzo...@tu-dresden.de 01062 Dresden http://tu-dresden.de/hydrobiologie/ GERMANY __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel -- Brian D. Ripley, rip...@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] (PR#14012)
* On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote:
I think Rscript has a problem running files that have mac encodings
for newline (^M rather than ^J on linux). If I source the file within
R, it works okay:
source('j.R')
[1] MEA_data/sernagor_new/CRX_P7_1.txt
But if I run the file using Rscript on a linux box I get a strange
error message:
$ Rscript --vanilla j.R
Execution halted
I think you are right that Rscript is unhappy to handle files with CR
line terminators. But IIUC, the purpose of Rscript is to enable R
script execution on unix-like systems like:
#!/path/to/Rscript --vanilla
print(1:10)
So then I'm not sure how useful it is for Rscript to handle such
files. Why not convert to a more common and portable line termination
for your R script files?
+ seth
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Re: [Rd] (PR#14012)
Even though its not hard to convert files, I think it would be better
if R could directly handle different line endings since R tends to be
used in a cross platform way and its common to have files of different
line endings that originated from different systems.
On Sat, Oct 17, 2009 at 5:03 PM, Seth Falcon s...@userprimary.net wrote:
* On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote:
I think Rscript has a problem running files that have mac encodings
for newline (^M rather than ^J on linux). If I source the file within
R, it works okay:
source('j.R')
[1] MEA_data/sernagor_new/CRX_P7_1.txt
But if I run the file using Rscript on a linux box I get a strange
error message:
$ Rscript --vanilla j.R
Execution halted
I think you are right that Rscript is unhappy to handle files with CR
line terminators. But IIUC, the purpose of Rscript is to enable R
script execution on unix-like systems like:
#!/path/to/Rscript --vanilla
print(1:10)
So then I'm not sure how useful it is for Rscript to handle such
files. Why not convert to a more common and portable line termination
for your R script files?
+ seth
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[Rd] R292 on AIX53 using gcc
I apologize for cross posting this message in the R-help group as well. Having posted it there a couple of hours ago, I felt this may be a more appropriate forum for a question of this type. Hello -- I am unable to build R 2.9.2 on IBM PowerPC AIX5.3. I would appreciate any help in this matter. ===details== Machine: IBM PowerPC_POWER5 / 4 proc, 1499 MHz 64-bit / AIX 5.3.0.0 Building R 2.9.2 using gcc/g++/gfortran 4.2.4 Config.site changes are: OBJECT_MODE=64 CONFIG_SHELL=/usr/bin/bash LIBICONV=/opt/freeware/lib AR=ar -X64 CC=gcc -maix64 F77=gfortran -maix64 LDFLAGS=-L/opt/freeware/lib64 -L/opt/freeware/64/lib -L/opt/freeware/lib -L/usr/local/lib CXX=g++ -maix64 FC=gfortran -maix64 R_BROWSER=/opt/freeware/bin/firefox MAKE=/opt/freeware/bin/make Command for configure: ./configure --enable-R-shlib Looks like I have to set OBJECT_MODE explicitly on the command line. So, I enter: set OBJECT_MODE=64. It does not seem to help that I have it in config.site. make stops with the following error: gcc -maix64 -std=gnu99 -Wl,-brtl -Wl,-bexpall -Wl,-bpT:0x1 -Wl,-bpD:0x11000 -lc -L/opt/freeware/lib64 -L/opt/freeware/64/lib -L/opt/freeware/lib -L/usr/local/lib -o R.bin Rmain.o -L../../lib -lR ld: 0711-224 WARNING: Duplicate symbol: .memcpy ...duplicate symbol warning for: memcpy,bcopy,memset,fres ld: 0711-317 ERROR: Undefined symbol: R_running_as_main_program collect2: ld returned 8 exit status make: The error code from the last command is 1. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] (PR#14012)
Seth Falcon wrote:
* On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote:
I think Rscript has a problem running files that have mac encodings
for newline (^M rather than ^J on linux). If I source the file within
R, it works okay:
source('j.R')
[1] MEA_data/sernagor_new/CRX_P7_1.txt
But if I run the file using Rscript on a linux box I get a strange
error message:
$ Rscript --vanilla j.R
Execution halted
I think you are right that Rscript is unhappy to handle files with CR
line terminators. But IIUC, the purpose of Rscript is to enable R
script execution on unix-like systems like:
#!/path/to/Rscript --vanilla
print(1:10)
So then I'm not sure how useful it is for Rscript to handle such
files. Why not convert to a more common and portable line termination
for your R script files?
Notice also that other script interpreters aren't happy about CR line
endings:
$ cat x.sh
#!/bin/bash
echo hello
Now change the LF to CR and get
$ ./x.sh
bash: ./x.sh: /bin/bash^M: bad interpreter: No such file or directory
or (if you add a space)
$ ./x.sh
echo hello: No such file or directory
$ bash -v ./x.sh
echo hello
(overprinting is involved in the last one).
--
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c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K
(*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918
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Re: [Rd] (PR#14012)
On Sat, 17 Oct 2009, Seth Falcon wrote:
* On 2009-10-16 at 15:00 +0200 sj...@damtp.cam.ac.uk wrote:
I think Rscript has a problem running files that have mac encodings
for newline (^M rather than ^J on linux).
I think those are Mac conventions for end-of-line, not for newline.
Even in MacRoman encoding, Ctrl-M is carriage return and Ctrl-J is
newline aka linefeed..
If I source the file within R, it works okay:
source('j.R')
[1] MEA_data/sernagor_new/CRX_P7_1.txt
But if I run the file using Rscript on a linux box I get a strange
error message:
$ Rscript --vanilla j.R
Execution halted
I think you are right that Rscript is unhappy to handle files with CR
line terminators.
More accurately, R's parser is: this applies to R CMD BATCH and R
itself with redirection. The point is that the documentation says
that R commands have to be separated by newline or semicolon and CR is
neither. (See, e.g. R-intro section 1.8.)
It is also documented that text-mode connections (which source() uses)
map CR and CRLF to newline, so source() can accept CR-delimited files.
And the error message looks strange because it has CRs but not NLs in
it (since the input did) and presumably the terminal used replaces not
superposes characters.
What actually is claimed to be the bug here? There is no subject
line, and no clear statement. Is that Rscript gives an error, that
source() works or that the error message comes out mangled on a
particular terminal?
But IIUC, the purpose of Rscript is to enable R script execution on
unix-like systems like:
#!/path/to/Rscript --vanilla
print(1:10)
So then I'm not sure how useful it is for Rscript to handle such
files. Why not convert to a more common and portable line termination
for your R script files?
+ seth
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Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
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[Rd] Fortran with OpenMP
Dear, I wrote a code in Fortran using OpenMP. When testing the code in Fortran it was working. However, changing the code for the R, it does not indicate the use of threads, it should indicate. I know that the R accepts the directives of OpenMP, but I can not use them correctly in R. Below is a small sample code that should work with the use of OpenMP, but does not work when I use the R. SUBROUTINE A1(N, A, B) INCLUDE omp_lib.h INTEGER :: I, N DOUBLE PRECISION, DIMENSION(N) :: B(N), A(N) LOGICAL :: OMP_IN_PARALLEL !$OMP PARALLEL DO WRITE(*,*) OMP_IN_PARALLEL() !$OMP DO DO I=2,N B(I) = (A(I) + A(I-1)) / 2.0 ENDDO !$OMP END DO !$OMP END PARALLEL END SUBROUTINE A1 # Compiling R CMD SHLIB teste.f95 -o teste.so -fopenmp # Output of the R a - rnorm(10) b - rnorm(10) N - length(a) dyn.load(teste.so) .Fortran(A1, as.integer(n), as.double(a),as.double(b)) F# Should return TRUE and not FALSE [[1]] [1] 5 [[2]] [1] -1.0885364 0.4170852 -0.4627566 0.5662825 -1.9792053 1.0347733 [7] 1.1615486 1.1752779 1.4337560 -0.2803431 [[3]] [1] -0.52768479 -0.33572564 -0.02283571 0.05176294 -0.70646140 -0.15066979 [7] -0.82335438 1.20606866 -1.65533309 1.04965146 Somebody to say would know me where is the error? Thank you very much! Fábio Mathias Corrêa Estatística e Experimentação Agropecuária/UFLA Veja quais são os assuntos do momento no Yahoo! +Buscados http://br.maisbuscados.yahoo.com __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] Rscript not returning zero
Hi I'm trying to run a R script in a computer grid using the Rscript interpreter, but the Rscript is not returning zero (even when the scripts processes succesfully) on its exit which causes the scheduler to detect an error and not records the output. Is there any way to get the Rscript returning zero ? -- A critical section of code is like a bathroom. Only one person is allowed inside at once. Iker Gondra, Operating Systems St. Francis Xavier University, Antigonish, NS === Rodrigo L. M. Flores Computer Science Student - IME - USP Homepage (en): http://www.rodrigoflores.org Blog (pt-BR): http://blog.rodrigoflores.org Linux User # : 351304 Jabber: i...@rodrigoflores.org __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] Rscript not returning zero
On Sat, 17 Oct 2009, Rodrigo Flores wrote: Hi I'm trying to run a R script in a computer grid using the Rscript interpreter, but the Rscript is not returning zero (even when the scripts processes succesfully) on its exit which causes the scheduler to detect an error and not records the output. Is there any way to get the Rscript returning zero ? Have a successful script You have not told us the 'at a minimum' information asked for in the posting guide, whereas I get (under sh) sh-3.2$ Rscript -e 'sessionInfo()' R version 2.9.2 (2009-08-24) x86_64-unknown-linux-gnu locale: LC_CTYPE=en_GB.utf8;LC_NUMERIC=C;LC_TIME=en_GB.utf8;LC_COLLATE=C;LC_MONETARY=C;LC_MESSAGES=en_GB.utf8;LC_PAPER=en_GB.utf8;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=en_GB.utf8;LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets base sh-3.2$ echo $? 0 so please give a reproducible example of a successful script not returning zero. Rodrigo L. M. Flores Computer Science Student - IME - USP Homepage (en): http://www.rodrigoflores.org Blog (pt-BR): http://blog.rodrigoflores.org -- Brian D. Ripley, rip...@stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
