Re: [Rd] validspamobject?
A quick google search has a function called `validate_spam()` in the package: SPAM . SPArse Matrix Package spam is a collection of functions for sparse matrix algebra. Are you doing anything with sparse matrices? HTH, -Roy > On Aug 14, 2018, at 5:56 PM, Ronald Barry wrote: > > validspamobject()` is deprecated. Use `validate_spam()` directly ** "The contents of this message do not reflect any position of the U.S. Government or NOAA." ** Roy Mendelssohn Supervisory Operations Research Analyst NOAA/NMFS Environmental Research Division Southwest Fisheries Science Center ***Note new street address*** 110 McAllister Way Santa Cruz, CA 95060 Phone: (831)-420-3666 Fax: (831) 420-3980 e-mail: roy.mendelss...@noaa.gov www: http://www.pfeg.noaa.gov/ "Old age and treachery will overcome youth and skill." "From those who have been given much, much will be expected" "the arc of the moral universe is long, but it bends toward justice" -MLK Jr. __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
[Rd] validspamobject?
Greetings, My R package has been showing warnings of the form: `validspamobject()` is deprecated. Use `validate_spam()` directly None of my code uses the function validspamobject, so it must be a problem in another package I'm calling, possibly spam or spdep. Has this problem occurred with other people? It doesn't have any deleterious effect, but it's annoying. In particular, how do I determine which package is causing this warning? Thanks. Ron B. [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R CMD check warnings on Windows
I don't think this has anything to do with Fortran.
The full warning message is presumably like
Warning: S3 methods . . . were declared in NAMESPACE but not found
which according to google-fu happens if you are declaring methods from a
package that isn't loaded, in this case possibly dplyr.
On previous occasions, this has happened due to race conditions so that one
package is not completely updated before another is installed, and that could
well be the case if you see trouble on just the one platform, so maybe wait and
see if the warning goes away. Otherwise, check for missing dependencies.
> On 14 Aug 2018, at 17:00 , Wang, Zhu wrote:
>
> Hi all,
>
> For the R package bujar, the warnings below were generated on CRAN's Windows
> systems. The package uses some Fortran subroutines. I would appreciate any
> advice to eliminate the warnings. By the way, similar warnings were generated
> to some unrelated R packages as well:
> https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html.
>
> Thanks in advance.
>
> Zhu Wang
>
> https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/bujar-00check.html
>
>
> * installing *source* package 'bujar' ...
> ** package 'bujar' successfully unpacked and MD5 sums checked
> ** R
> ** data
> ** inst
> ** byte-compile and prepare package for lazy loading
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df',
> 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame',
> 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df',
> 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df',
> 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df',
> 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array',
> 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table',
> 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube',
> 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame',
> 'collect.data.frame', 'common_by.NULL', 'common_by.character',
> 'common_by.default', 'common_by.list', 'compute.data.frame',
> 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame',
> 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame',
> 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df',
> 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> ** help
> *** installing help indices
> ** building package indices
> ** installing vignettes
> ** testing if installed package can be loaded
> *** arch - i386
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df',
> 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame',
> 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df',
> 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df',
> 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df',
> 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array',
> 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table',
> 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube',
> 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame',
> 'collect.data.frame', 'common_by.NULL', 'common_by.character',
> 'common_by.default', 'common_by.list', 'compute.data.frame',
> 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame',
> 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame',
> 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df',
> 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> *** arch - x64
> Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df',
> 'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame',
> 'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df',
> 'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df',
> 'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df',
> 'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array',
> 'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table',
> 'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube',
> 'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame',
> 'collect.data.frame', 'common_by.NULL', 'common_by.character',
> 'common_by.default', 'common_by.list', 'compute.data.frame',
> 'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame',
> 'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame',
> 'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df',
> 'distinct_.data.frame', 'distinct_.grouped
> _df', 'dist [... truncated]
> * MD5 sums
> packaged installation of 'bujar' as bujar_0.2-3.zip
> * DONE (bujar)
> In R CMD INSTALL
>
>
> **Connecticut Children's Confidentiality Notice**
> This e-mail message, including any attachments, is for...{{drop
[Rd] R CMD check warnings on Windows
Hi all,
For the R package bujar, the warnings below were generated on CRAN's Windows
systems. The package uses some Fortran subroutines. I would appreciate any
advice to eliminate the warnings. By the way, similar warnings were generated
to some unrelated R packages as well:
https://www.r-project.org/nosvn/R.check/r-oldrel-windows-ix86+x86_64/imputeTS-00check.html.
Thanks in advance.
Zhu Wang
https://www.r-project.org/nosvn/R.check/r-devel-windows-ix86+x86_64/bujar-00check.html
* installing *source* package 'bujar' ...
** package 'bujar' successfully unpacked and MD5 sums checked
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df',
'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame',
'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df',
'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df',
'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df',
'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array',
'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table',
'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube',
'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame',
'collect.data.frame', 'common_by.NULL', 'common_by.character',
'common_by.default', 'common_by.list', 'compute.data.frame',
'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame',
'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame',
'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df',
'distinct_.data.frame', 'distinct_.grouped
_df', 'dist [... truncated]
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
*** arch - i386
Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df',
'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame',
'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df',
'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df',
'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df',
'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array',
'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table',
'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube',
'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame',
'collect.data.frame', 'common_by.NULL', 'common_by.character',
'common_by.default', 'common_by.list', 'compute.data.frame',
'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame',
'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame',
'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df',
'distinct_.data.frame', 'distinct_.grouped
_df', 'dist [... truncated]
*** arch - x64
Warning: S3 methods '[.fun_list', '[.grouped_df', 'all.equal.tbl_df',
'anti_join.data.frame', 'anti_join.tbl_df', 'arrange.data.frame',
'arrange.default', 'arrange.grouped_df', 'arrange.tbl_df',
'arrange_.data.frame', 'arrange_.tbl_df', 'as.data.frame.grouped_df',
'as.data.frame.rowwise_df', 'as.data.frame.tbl_cube', 'as.data.frame.tbl_df',
'as.table.tbl_cube', 'as.tbl.data.frame', 'as.tbl.tbl', 'as.tbl_cube.array',
'as.tbl_cube.data.frame', 'as.tbl_cube.matrix', 'as.tbl_cube.table',
'as_data_frame.grouped_df', 'as_data_frame.tbl_cube', 'auto_copy.tbl_cube',
'auto_copy.tbl_df', 'cbind.grouped_df', 'collapse.data.frame',
'collect.data.frame', 'common_by.NULL', 'common_by.character',
'common_by.default', 'common_by.list', 'compute.data.frame',
'copy_to.DBIConnection', 'copy_to.src_local', 'default_missing.data.frame',
'default_missing.default', 'dim.tbl_cube', 'distinct.data.frame',
'distinct.default', 'distinct.grouped_df', 'distinct.tbl_df',
'distinct_.data.frame', 'distinct_.grouped
_df', 'dist [... truncated]
* MD5 sums
packaged installation of 'bujar' as bujar_0.2-3.zip
* DONE (bujar)
In R CMD INSTALL
**Connecticut Children's Confidentiality Notice**
This e-mail message, including any attachments, is for t...{{dropped:11}}
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[Rd] CRAN incoming queue closed from Sep 1 to Sep 9
Dear developers, the CRAN incoming queue will be closed from Sep 1 to Sep 9. Hence package submissions are only possible before and after that period. Best, Uwe Ligges (for the CRAN team) __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] vector arithmetic
I've been wondering this, too! Following the codes in arithmetic.c, I've finally reached MOD_ITERATE2_CORE macro in src/include/R_ext/Itermacros.h. Is this the place? Best 2018年8月14日(火) 2:59 isomorphismes : > I'm looking for where in the source recycling and vector > multiplication+addition are defined. I see some stuff in > ~/src/main/arithmetic.c. > > Is there anywhere else I should be looking as well? > > Cheers > > -- > isomorphi...@sdf.org > SDF Public Access UNIX System - http://sdf.org > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel > [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
