[Bioc-devel] DeMixT Bioconductor maintainer
Hi Bioconductor team, I would like to change maintainer for our DeMixT package. https://bioconductor.org/packages/release/bioc/html/DeMixT.html Below is the contact information. maintainer: Shuai Guo email: shuai@uth.tmc.edu (cc'd in this email) I will update the new maintainer information in DESCRIPTION, and push to the Bioconductor (devel brunch) very soon. Thanks, Peng [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Question for scheduled release
Dear Bioconductor team, I am the maintainer for DeMixT package (1.5.0 in devel, 1.4.0 in release currently). Here I have a question for release schedule. I notice the scheduled new devel Bioc 3.13 is Oct 13th, does that mean if I want to push a new version 1.7.0 on devel, I need to wait for the building of Bioc 3.13 (Oct 13th)? If I push the new version successfully then, the corresponding release version 1.6.0 will be released automatically on Oct 26th? Thanks for all the help, Peng ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
[Bioc-devel] Question for building error
Dear Bioconductor team, I met a building errors for our package, DeMixT 1.3.6, under Mac OS planform on Apr 16th. And it shows failed to create vignettes. Since R 4.0.0 no longer support OpenMP, I disabled OpenMP under Mac version and it passed the building process after I committed the change on Apr 12th. However, I did not see the specific reason why failed to create vignettes this time, may I ask how can I fix this issue? Thank you so much, Peng ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
Re: [Bioc-devel] New Mac builder and availability of Mac binary packages
Dear Bioconductor team, I just found out that our package DeMixT 1.3.5 is failed to install for Mac under the developed version. Does that mean I need to rebuild the package under the official Mac build of R 4.0.0 alpha and push it again? Thanks, Peng On 4/9/20, 4:13 PM, "Bioc-devel on behalf of Hervé Pagès" wrote: Hello Bioconductor developers, As you've probably noticed already, we're building BioC 3.11 on Mac again: https://bioconductor.org/checkResults/3.11/bioc-LATEST/ The build target now is High Sierra (used to be El Capitan), like for the official Mac built of R 4.0.0 alpha (available here https://mac.r-project.org/) and for the Mac binary packages available on CRAN. This means that the binaries we produce are only compatible with High Sierra or higher, as long as you're using the official Mac built of R 4.0.0. IMPORTANT: CRAN and Bioconductor binary packages for Mac are NOT meant to be used with an R 4.0.0 installed from source (they're likely to crash your session, typically at load time). Using BiocManager::install() with the official Mac built of R 4.0.0 will pick up binary packages from CRAN and Bioconductor 3.11. It will fall back on source packages only when the binaries are not available. Please let us know if you run into any problem with this. Cheers, H. -- Hervé Pagès Program in Computational Biology Division of Public Health Sciences Fred Hutchinson Cancer Research Center 1100 Fairview Ave. N, M1-B514 P.O. Box 19024 Seattle, WA 98109-1024 E-mail: hpa...@fredhutch.org Phone: (206) 667-5791 Fax:(206) 667-1319 ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel
