Re: [Rd] FreeBSD 7.0-CURRENT and R-2.2.0 alpha
Sorry for my very late answer. On Sept. 12th I got an unexpected business trip until yesterday evening, so I had no chance to try out. Thank you for the hints. But I am afraid I have no idea how to extract the needed information. With R-2.2.0 (R-beta_2005-09-22_r35658.tar.gz) I tried the following: nm /usr/lib/libc.a | grep cpow nm /usr/lib/libm.a | grep cpow In both cases without any result. Where I have to look? Or what else can I do to find out where the libs with these procedures are? Rainer Hurling Prof Brian Ripley wrote: These were found by AC_CHECK_FUNCS (please confirm what configure said) so most likely some macro needs to be set or header included. Could you please find out how configure managed to find cpow etc when they appear not to be in libc/libm? On Sat, 10 Sep 2005, Rainer Hurling wrote: The configure script runs fine, but when I compile todays alpha version of R-2.2.0 (R-alpha_2005-09-10_r35546.tar.gz) under FreeBSD 7.0-CURRENT from Sept. 4th I get the following output: [...] gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c version.c -o version.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c vfonts.c -o vfonts.o f77 -g -O2 -c xxxpr.f -o xxxpr.o gcc -export-dynamic -L/usr/local/lib -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lf77blas -latlas -lg2c -lm ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a /usr/local/lib/libintl.so -Wl,-rpath -Wl,/usr/local/lib -lreadline -lm -liconv complex.o(.text+0x106): In function `mycpow': /usr/local/R-alpha/src/main/complex.c:170: undefined reference to `cpow' complex.o(.text+0x6f9): In function `do_cmathfuns': /usr/local/R-alpha/src/main/complex.c:323: undefined reference to `carg' complex.o(.text+0xb4b): In function `z_log': /usr/local/R-alpha/src/main/complex.c:423: undefined reference to `clog' complex.o(.text+0xb86): In function `z_logbase': /usr/local/R-alpha/src/main/complex.c:429: undefined reference to `clog' complex.o(.text+0xb98):/usr/local/R-alpha/src/main/complex.c:429: undefined reference to `clog' complex.o(.text+0xbd8): In function `z_exp': /usr/local/R-alpha/src/main/complex.c:434: undefined reference to `cexp' complex.o(.text+0xbf8): In function `z_sqrt': /usr/local/R-alpha/src/main/complex.c:439: undefined reference to `csqrt' complex.o(.text+0xc18): In function `z_cos': /usr/local/R-alpha/src/main/complex.c:486: undefined reference to `ccos' complex.o(.text+0xc38): In function `z_sin': /usr/local/R-alpha/src/main/complex.c:491: undefined reference to `csin' complex.o(.text+0xc5e): In function `z_tan': /usr/local/R-alpha/src/main/complex.c:497: undefined reference to `ctan' complex.o(.text+0xd26): In function `z_atan2': /usr/local/R-alpha/src/main/complex.c:523: undefined reference to `catan' complex.o(.text+0xe18): In function `z_asin': /usr/local/R-alpha/src/main/complex.c:541: undefined reference to `casin' complex.o(.text+0xe38): In function `z_acos': /usr/local/R-alpha/src/main/complex.c:553: undefined reference to `cacos' complex.o(.text+0xe58): In function `z_atan': /usr/local/R-alpha/src/main/complex.c:559: undefined reference to `catan' complex.o(.text+0xe78): In function `z_acosh': /usr/local/R-alpha/src/main/complex.c:564: undefined reference to `cacosh' complex.o(.text+0xe98): In function `z_asinh': /usr/local/R-alpha/src/main/complex.c:569: undefined reference to `casinh' complex.o(.text+0xeb8): In function `z_atanh': /usr/local/R-alpha/src/main/complex.c:574: undefined reference to `catanh' complex.o(.text+0xed8): In function `z_cosh': /usr/local/R-alpha/src/main/complex.c:579: undefined reference to `ccosh' complex.o(.text+0xef8): In function `z_sinh':
Re: [Rd] FreeBSD 7.0-CURRENT and R-2.2.0 alpha
These were found by AC_CHECK_FUNCS (please confirm what configure said) so most likely some macro needs to be set or header included. Could you please find out how configure managed to find cpow etc when they appear not to be in libc/libm? On Sat, 10 Sep 2005, Rainer Hurling wrote: The configure script runs fine, but when I compile todays alpha version of R-2.2.0 (R-alpha_2005-09-10_r35546.tar.gz) under FreeBSD 7.0-CURRENT from Sept. 4th I get the following output: [...] gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c version.c -o version.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c vfonts.c -o vfonts.o f77 -g -O2 -c xxxpr.f -o xxxpr.o gcc -export-dynamic -L/usr/local/lib -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lf77blas -latlas -lg2c -lm ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a /usr/local/lib/libintl.so -Wl,-rpath -Wl,/usr/local/lib -lreadline -lm -liconv complex.o(.text+0x106): In function `mycpow': /usr/local/R-alpha/src/main/complex.c:170: undefined reference to `cpow' complex.o(.text+0x6f9): In function `do_cmathfuns': /usr/local/R-alpha/src/main/complex.c:323: undefined reference to `carg' complex.o(.text+0xb4b): In function `z_log': /usr/local/R-alpha/src/main/complex.c:423: undefined reference to `clog' complex.o(.text+0xb86): In function `z_logbase': /usr/local/R-alpha/src/main/complex.c:429: undefined reference to `clog' complex.o(.text+0xb98):/usr/local/R-alpha/src/main/complex.c:429: undefined reference to `clog' complex.o(.text+0xbd8): In function `z_exp': /usr/local/R-alpha/src/main/complex.c:434: undefined reference to `cexp' complex.o(.text+0xbf8): In function `z_sqrt': /usr/local/R-alpha/src/main/complex.c:439: undefined reference to `csqrt' complex.o(.text+0xc18): In function `z_cos': /usr/local/R-alpha/src/main/complex.c:486: undefined reference to `ccos' complex.o(.text+0xc38): In function `z_sin': /usr/local/R-alpha/src/main/complex.c:491: undefined reference to `csin' complex.o(.text+0xc5e): In function `z_tan': /usr/local/R-alpha/src/main/complex.c:497: undefined reference to `ctan' complex.o(.text+0xd26): In function `z_atan2': /usr/local/R-alpha/src/main/complex.c:523: undefined reference to `catan' complex.o(.text+0xe18): In function `z_asin': /usr/local/R-alpha/src/main/complex.c:541: undefined reference to `casin' complex.o(.text+0xe38): In function `z_acos': /usr/local/R-alpha/src/main/complex.c:553: undefined reference to `cacos' complex.o(.text+0xe58): In function `z_atan': /usr/local/R-alpha/src/main/complex.c:559: undefined reference to `catan' complex.o(.text+0xe78): In function `z_acosh': /usr/local/R-alpha/src/main/complex.c:564: undefined reference to `cacosh' complex.o(.text+0xe98): In function `z_asinh': /usr/local/R-alpha/src/main/complex.c:569: undefined reference to `casinh' complex.o(.text+0xeb8): In function `z_atanh': /usr/local/R-alpha/src/main/complex.c:574: undefined reference to `catanh' complex.o(.text+0xed8): In function `z_cosh': /usr/local/R-alpha/src/main/complex.c:579: undefined reference to `ccosh' complex.o(.text+0xef8): In function `z_sinh': /usr/local/R-alpha/src/main/complex.c:584: undefined reference to `csinh' complex.o(.text+0xf18): In function `z_tanh': /usr/local/R-alpha/src/main/complex.c:589: undefined reference to `ctanh' *** Error code 1 Stop in /usr/local/R-alpha/src/main. *** Error code 1 Stop in /usr/local/R-alpha/src/main. *** Error code 1 Stop in /usr/local/R-alpha/src. *** Error code 1 Stop in /usr/local/R-alpha. Am I missing something? Thank you, Rainer Hurling __ R-devel@r-project.org
[Rd] FreeBSD 7.0-CURRENT and R-2.2.0 alpha
The configure script runs fine, but when I compile todays alpha version of R-2.2.0 (R-alpha_2005-09-10_r35546.tar.gz) under FreeBSD 7.0-CURRENT from Sept. 4th I get the following output: [...] gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c version.c -o version.o gcc -I../../src/extra/zlib -I../../src/extra/bzip2 -I../../src/extra/pcre -I. -I../../src/include -I../../src/include -I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -g -O2 -c vfonts.c -o vfonts.o f77 -g -O2 -c xxxpr.f -o xxxpr.o gcc -export-dynamic -L/usr/local/lib -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lf77blas -latlas -lg2c -lm ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a /usr/local/lib/libintl.so -Wl,-rpath -Wl,/usr/local/lib -lreadline -lm -liconv complex.o(.text+0x106): In function `mycpow': /usr/local/R-alpha/src/main/complex.c:170: undefined reference to `cpow' complex.o(.text+0x6f9): In function `do_cmathfuns': /usr/local/R-alpha/src/main/complex.c:323: undefined reference to `carg' complex.o(.text+0xb4b): In function `z_log': /usr/local/R-alpha/src/main/complex.c:423: undefined reference to `clog' complex.o(.text+0xb86): In function `z_logbase': /usr/local/R-alpha/src/main/complex.c:429: undefined reference to `clog' complex.o(.text+0xb98):/usr/local/R-alpha/src/main/complex.c:429: undefined reference to `clog' complex.o(.text+0xbd8): In function `z_exp': /usr/local/R-alpha/src/main/complex.c:434: undefined reference to `cexp' complex.o(.text+0xbf8): In function `z_sqrt': /usr/local/R-alpha/src/main/complex.c:439: undefined reference to `csqrt' complex.o(.text+0xc18): In function `z_cos': /usr/local/R-alpha/src/main/complex.c:486: undefined reference to `ccos' complex.o(.text+0xc38): In function `z_sin': /usr/local/R-alpha/src/main/complex.c:491: undefined reference to `csin' complex.o(.text+0xc5e): In function `z_tan': /usr/local/R-alpha/src/main/complex.c:497: undefined reference to `ctan' complex.o(.text+0xd26): In function `z_atan2': /usr/local/R-alpha/src/main/complex.c:523: undefined reference to `catan' complex.o(.text+0xe18): In function `z_asin': /usr/local/R-alpha/src/main/complex.c:541: undefined reference to `casin' complex.o(.text+0xe38): In function `z_acos': /usr/local/R-alpha/src/main/complex.c:553: undefined reference to `cacos' complex.o(.text+0xe58): In function `z_atan': /usr/local/R-alpha/src/main/complex.c:559: undefined reference to `catan' complex.o(.text+0xe78): In function `z_acosh': /usr/local/R-alpha/src/main/complex.c:564: undefined reference to `cacosh' complex.o(.text+0xe98): In function `z_asinh': /usr/local/R-alpha/src/main/complex.c:569: undefined reference to `casinh' complex.o(.text+0xeb8): In function `z_atanh': /usr/local/R-alpha/src/main/complex.c:574: undefined reference to `catanh' complex.o(.text+0xed8): In function `z_cosh': /usr/local/R-alpha/src/main/complex.c:579: undefined reference to `ccosh' complex.o(.text+0xef8): In function `z_sinh': /usr/local/R-alpha/src/main/complex.c:584: undefined reference to `csinh' complex.o(.text+0xf18): In function `z_tanh': /usr/local/R-alpha/src/main/complex.c:589: undefined reference to `ctanh' *** Error code 1 Stop in /usr/local/R-alpha/src/main. *** Error code 1 Stop in /usr/local/R-alpha/src/main. *** Error code 1 Stop in /usr/local/R-alpha/src. *** Error code 1 Stop in /usr/local/R-alpha. Am I missing something? Thank you, Rainer Hurling __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
