Re: [Rd] Problem with build and check

2014-11-13 Thread Duncan Murdoch 

On 12/11/2014 2:36 PM, Joshua Ulrich wrote:

On Wed, Nov 12, 2014 at 1:28 PM, Duncan Murdoch
 wrote:
> On 12/11/2014 2:11 PM, Therneau, Terry M., Ph.D. wrote:
>>
>> I am getting failure of build and check, for an Rd file that has a long
>> argument list.
>> Guess diagnosis: a quoted string beyond a certain point in the argument
>> list is fatal.
>
>
> No, the problem is that % is a comment marker in .Rd.  You need to escape
> those in the dateformat default.  Apparently
> prompt() doesn't know this...
>
> Duncan Murdoch
>
prompt.default does add the escapes for the example section, but not
for the usage section.


Yes, that was the problem.  Now fixed in R-devel, soon in R-patched.

Duncan Murdoch


>>
>> Example:  Use the function below, create an Rd file for it with prompt().
>> Move the .Rd
>> file to the man directory (no need to edit it) and try building
>>
>> dart.control <- function(server=c("production", "integration",
>> "development",
>> "http"),
>>out.poll.duration = 5,
>>out.poll.increase = 1.1,
>>out.poll.max = 30,
>>out.poll.timeout = 3600,
>>netrc.path,
>>netrc.server = "ldap",
>>rtype = c("xml", "json"),
>>dateformat= "%Y-%m-%d") {
>>
>>   server <- match.arg(server)
>>   server
>> }
>>
>> I created a package "dummy" with only this function, and get the following
>> on my Linux box.
>>
>> tmt-local2021% R CMD build dummy
>> * checking for file ‘dummy/DESCRIPTION’ ... OK
>> * preparing ‘dummy’:
>> * checking DESCRIPTION meta-information ... OK
>> Warning: newline within quoted string at dart.control.Rd:11
>> Warning: /tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46:
>> unexpected
>> section header '\value'
>> Warning: newline within quoted string at dart.control.Rd:11
>> Error in
>> parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd", :
>> Unexpected end of input (in " quoted string opened at
>> dart.control.Rd:88:16)
>> Execution halted
>>
>> Session info for my version
>>   > sessionInfo()
>> R Under development (unstable) (2014-10-30 r66907)
>> Platform: i686-pc-linux-gnu (32-bit)
>>
>> locale:
>>[1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
>>[3] LC_TIME=en_US.UTF-8LC_COLLATE=C
>>[5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
>>[7] LC_PAPER=en_US.UTF-8   LC_NAME=C
>>[9] LC_ADDRESS=C   LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats graphics  grDevices utils datasets  methods base
>>
>>
>> Terry T.
>>
>> __
>> R-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel





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Re: [Rd] Problem with build and check

2014-11-12 Thread Joshua Ulrich 
On Wed, Nov 12, 2014 at 1:28 PM, Duncan Murdoch
 wrote:
> On 12/11/2014 2:11 PM, Therneau, Terry M., Ph.D. wrote:
>>
>> I am getting failure of build and check, for an Rd file that has a long
>> argument list.
>> Guess diagnosis: a quoted string beyond a certain point in the argument
>> list is fatal.
>
>
> No, the problem is that % is a comment marker in .Rd.  You need to escape
> those in the dateformat default.  Apparently
> prompt() doesn't know this...
>
> Duncan Murdoch
>
prompt.default does add the escapes for the example section, but not
for the usage section.

>>
>> Example:  Use the function below, create an Rd file for it with prompt().
>> Move the .Rd
>> file to the man directory (no need to edit it) and try building
>>
>> dart.control <- function(server=c("production", "integration",
>> "development",
>> "http"),
>>out.poll.duration = 5,
>>out.poll.increase = 1.1,
>>out.poll.max = 30,
>>out.poll.timeout = 3600,
>>netrc.path,
>>netrc.server = "ldap",
>>rtype = c("xml", "json"),
>>dateformat= "%Y-%m-%d") {
>>
>>   server <- match.arg(server)
>>   server
>> }
>>
>> I created a package "dummy" with only this function, and get the following
>> on my Linux box.
>>
>> tmt-local2021% R CMD build dummy
>> * checking for file ‘dummy/DESCRIPTION’ ... OK
>> * preparing ‘dummy’:
>> * checking DESCRIPTION meta-information ... OK
>> Warning: newline within quoted string at dart.control.Rd:11
>> Warning: /tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46:
>> unexpected
>> section header '\value'
>> Warning: newline within quoted string at dart.control.Rd:11
>> Error in
>> parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd", :
>> Unexpected end of input (in " quoted string opened at
>> dart.control.Rd:88:16)
>> Execution halted
>>
>> Session info for my version
>>   > sessionInfo()
>> R Under development (unstable) (2014-10-30 r66907)
>> Platform: i686-pc-linux-gnu (32-bit)
>>
>> locale:
>>[1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
>>[3] LC_TIME=en_US.UTF-8LC_COLLATE=C
>>[5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
>>[7] LC_PAPER=en_US.UTF-8   LC_NAME=C
>>[9] LC_ADDRESS=C   LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] stats graphics  grDevices utils datasets  methods base
>>
>>
>> Terry T.
>>
>> __
>> R-devel@r-project.org mailing list
>> https://stat.ethz.ch/mailman/listinfo/r-devel
>
>
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel



-- 
Joshua Ulrich  |  about.me/joshuaulrich
FOSS Trading  |  www.fosstrading.com

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Re: [Rd] Problem with build and check

2014-11-12 Thread William Dunlap 
'Writing R Extensions', section 2.1 Rd format, says"

Comments run from a percent symbol % to the end of the line in all types of
text (as on the first line of the load example).

Because backslashes, braces and percent symbols have special meaning, to
enter them into text sometimes requires escapes using a backslash. In
general balanced braces do not need to be escaped, but percent symbols
always do. For the complete list of macros and rules for escapes, see “Parsing
Rd files” .




Bill Dunlap
TIBCO Software
wdunlap tibco.com

On Wed, Nov 12, 2014 at 11:11 AM, Therneau, Terry M., Ph.D. <
thern...@mayo.edu> wrote:

> I am getting failure of build and check, for an Rd file that has a long
> argument list.
> Guess diagnosis: a quoted string beyond a certain point in the argument
> list is fatal.
>
> Example:  Use the function below, create an Rd file for it with prompt().
> Move the .Rd file to the man directory (no need to edit it) and try building
>
> dart.control <- function(server=c("production", "integration",
> "development",
>   "http"),
>  out.poll.duration = 5,
>  out.poll.increase = 1.1,
>  out.poll.max = 30,
>  out.poll.timeout = 3600,
>  netrc.path,
>  netrc.server = "ldap",
>  rtype = c("xml", "json"),
>  dateformat= "%Y-%m-%d") {
>
> server <- match.arg(server)
> server
> }
>
> I created a package "dummy" with only this function, and get the following
> on my Linux box.
>
> tmt-local2021% R CMD build dummy
> * checking for file ‘dummy/DESCRIPTION’ ... OK
> * preparing ‘dummy’:
> * checking DESCRIPTION meta-information ... OK
> Warning: newline within quoted string at dart.control.Rd:11
> Warning: /tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46:
> unexpected section header '\value'
> Warning: newline within quoted string at dart.control.Rd:11
> Error in 
> parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd",
> :
>   Unexpected end of input (in " quoted string opened at
> dart.control.Rd:88:16)
> Execution halted
>
> Session info for my version
> > sessionInfo()
> R Under development (unstable) (2014-10-30 r66907)
> Platform: i686-pc-linux-gnu (32-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8LC_COLLATE=C
>  [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8   LC_NAME=C
>  [9] LC_ADDRESS=C   LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics  grDevices utils datasets  methods base
>
>
> Terry T.
>
> __
> R-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>

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Re: [Rd] Problem with build and check

2014-11-12 Thread Duncan Murdoch 

On 12/11/2014 2:11 PM, Therneau, Terry M., Ph.D. wrote:

I am getting failure of build and check, for an Rd file that has a long 
argument list.
Guess diagnosis: a quoted string beyond a certain point in the argument list is 
fatal.


No, the problem is that % is a comment marker in .Rd.  You need to 
escape those in the dateformat default.  Apparently

prompt() doesn't know this...

Duncan Murdoch


Example:  Use the function below, create an Rd file for it with prompt().  Move 
the .Rd
file to the man directory (no need to edit it) and try building

dart.control <- function(server=c("production", "integration", "development",
"http"),
   out.poll.duration = 5,
   out.poll.increase = 1.1,
   out.poll.max = 30,
   out.poll.timeout = 3600,
   netrc.path,
   netrc.server = "ldap",
   rtype = c("xml", "json"),
   dateformat= "%Y-%m-%d") {

  server <- match.arg(server)
  server
}

I created a package "dummy" with only this function, and get the following on 
my Linux box.

tmt-local2021% R CMD build dummy
* checking for file ‘dummy/DESCRIPTION’ ... OK
* preparing ‘dummy’:
* checking DESCRIPTION meta-information ... OK
Warning: newline within quoted string at dart.control.Rd:11
Warning: /tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46: 
unexpected
section header '\value'
Warning: newline within quoted string at dart.control.Rd:11
Error in 
parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd", :
Unexpected end of input (in " quoted string opened at dart.control.Rd:88:16)
Execution halted

Session info for my version
  > sessionInfo()
R Under development (unstable) (2014-10-30 r66907)
Platform: i686-pc-linux-gnu (32-bit)

locale:
   [1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
   [3] LC_TIME=en_US.UTF-8LC_COLLATE=C
   [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
   [7] LC_PAPER=en_US.UTF-8   LC_NAME=C
   [9] LC_ADDRESS=C   LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics  grDevices utils datasets  methods base


Terry T.

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Re: [Rd] Problem with build and check

2014-11-12 Thread Enrico Schumann 
On Wed, 12 Nov 2014, "Therneau, Terry M., Ph.D."  writes:

> I am getting failure of build and check, for an Rd file that has a long 
> argument list.
> Guess diagnosis: a quoted string beyond a certain point in the argument list 
> is fatal.

Another guess: should you not escape the '%'?  That is, write
"\%Y-\%m-\%d"?  [Untested.]

> Example:  Use the function below, create an Rd file for it with
> prompt().  Move the .Rd file to the man directory (no need to edit it)
> and try building
>
> dart.control <- function(server=c("production", "integration", "development",
>   "http"),
>  out.poll.duration = 5,
>  out.poll.increase = 1.1,
>  out.poll.max = 30,
>  out.poll.timeout = 3600,
>  netrc.path,
>  netrc.server = "ldap",
>  rtype = c("xml", "json"),
>  dateformat= "%Y-%m-%d") {
>
> server <- match.arg(server)
> server
> }
>
> I created a package "dummy" with only this function, and get the following on 
> my Linux box.
>
> tmt-local2021% R CMD build dummy
> * checking for file ‘dummy/DESCRIPTION’ ... OK
> * preparing ‘dummy’:
> * checking DESCRIPTION meta-information ... OK
> Warning: newline within quoted string at dart.control.Rd:11
> Warning:
> /tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46:
> unexpected section header '\value'
> Warning: newline within quoted string at dart.control.Rd:11
> Error in 
> parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd", :
>   Unexpected end of input (in " quoted string opened at dart.control.Rd:88:16)
> Execution halted
>
> Session info for my version
>> sessionInfo()
> R Under development (unstable) (2014-10-30 r66907)
> Platform: i686-pc-linux-gnu (32-bit)
>
> locale:
>  [1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
>  [3] LC_TIME=en_US.UTF-8LC_COLLATE=C
>  [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
>  [7] LC_PAPER=en_US.UTF-8   LC_NAME=C
>  [9] LC_ADDRESS=C   LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] stats graphics  grDevices utils datasets  methods base
>
>
> Terry T.
>


-- 
Enrico Schumann
Lucerne, Switzerland
http://enricoschumann.net

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Re: [Rd] Problem with build and check

2014-11-12 Thread Paul Gilbert 
I certainly have longer argument lists with no problem. More likely the 
Rd file needs special consideration for %.


Paul

On 11/12/2014 02:11 PM, Therneau, Terry M., Ph.D. wrote:

I am getting failure of build and check, for an Rd file that has a long
argument list.
Guess diagnosis: a quoted string beyond a certain point in the argument
list is fatal.

Example:  Use the function below, create an Rd file for it with
prompt().  Move the .Rd file to the man directory (no need to edit it)
and try building

dart.control <- function(server=c("production", "integration",
"development",
   "http"),
  out.poll.duration = 5,
  out.poll.increase = 1.1,
  out.poll.max = 30,
  out.poll.timeout = 3600,
  netrc.path,
  netrc.server = "ldap",
  rtype = c("xml", "json"),
  dateformat= "%Y-%m-%d") {

 server <- match.arg(server)
 server
}

I created a package "dummy" with only this function, and get the
following on my Linux box.

tmt-local2021% R CMD build dummy
* checking for file ‘dummy/DESCRIPTION’ ... OK
* preparing ‘dummy’:
* checking DESCRIPTION meta-information ... OK
Warning: newline within quoted string at dart.control.Rd:11
Warning:
/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46:
unexpected section header '\value'
Warning: newline within quoted string at dart.control.Rd:11
Error in
parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd", :
   Unexpected end of input (in " quoted string opened at
dart.control.Rd:88:16)
Execution halted

Session info for my version
 > sessionInfo()
R Under development (unstable) (2014-10-30 r66907)
Platform: i686-pc-linux-gnu (32-bit)

locale:
  [1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8LC_COLLATE=C
  [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=en_US.UTF-8   LC_NAME=C
  [9] LC_ADDRESS=C   LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics  grDevices utils datasets  methods base


Terry T.

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[Rd] Problem with build and check

2014-11-12 Thread Therneau, Terry M., Ph.D. 

I am getting failure of build and check, for an Rd file that has a long 
argument list.
Guess diagnosis: a quoted string beyond a certain point in the argument list is 
fatal.

Example:  Use the function below, create an Rd file for it with prompt().  Move the .Rd 
file to the man directory (no need to edit it) and try building


dart.control <- function(server=c("production", "integration", "development",
  "http"),
 out.poll.duration = 5,
 out.poll.increase = 1.1,
 out.poll.max = 30,
 out.poll.timeout = 3600,
 netrc.path,
 netrc.server = "ldap",
 rtype = c("xml", "json"),
 dateformat= "%Y-%m-%d") {

server <- match.arg(server)
server
}

I created a package "dummy" with only this function, and get the following on 
my Linux box.

tmt-local2021% R CMD build dummy
* checking for file ‘dummy/DESCRIPTION’ ... OK
* preparing ‘dummy’:
* checking DESCRIPTION meta-information ... OK
Warning: newline within quoted string at dart.control.Rd:11
Warning: /tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd:46: unexpected 
section header '\value'

Warning: newline within quoted string at dart.control.Rd:11
Error in 
parse_Rd("/tmp/RtmpjPjz9V/Rbuild398d6e382572/dummy/man/dart.control.Rd", :
  Unexpected end of input (in " quoted string opened at dart.control.Rd:88:16)
Execution halted

Session info for my version
> sessionInfo()
R Under development (unstable) (2014-10-30 r66907)
Platform: i686-pc-linux-gnu (32-bit)

locale:
 [1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
 [3] LC_TIME=en_US.UTF-8LC_COLLATE=C
 [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
 [7] LC_PAPER=en_US.UTF-8   LC_NAME=C
 [9] LC_ADDRESS=C   LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats graphics  grDevices utils datasets  methods base


Terry T.

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