[Rd] R-devel (rev 76409) fails 'make check': non-generic function 'isSymmetric' given to findMethods()
Hello, Most likely I'm doing something wrong, but am at a loss as to what the issue is. I have a clean checkout of trunk here: ~/svn/r-devel/R$ svn info Path: . Working Copy Root Path: /home/btyner/svn/r-devel/R URL: https://svn.r-project.org/R/trunk Relative URL: ^/trunk Repository Root: https://svn.r-project.org/R Repository UUID: 00db46b3-68df-0310-9c12-caf00c1e9a41 Revision: 76409 Node Kind: directory Schedule: normal Last Changed Author: ripley Last Changed Rev: 76409 Last Changed Date: 2019-04-21 06:32:24 -0400 (Sun, 21 Apr 2019) I then ran: mkdir ~/svn/R-devel-build cd ~/svn/R-devel-build ../r-devel/R/configure --prefix=/home/btyner/R-76409 --enable-R-shlib --with-blas --with-lapack --with-readline --without-recommended-packages make make check which fails at reg-tests-1d.R; the failure being: > ## str() now even works with invalid objects: > moS <- mo <- findMethods("isSymmetric") Error in findMethods("isSymmetric") : (converted from warning) non-generic function 'isSymmetric' given to findMethods() Execution halted I am able to build revision 76407 from source just fine (using https://cran.r-project.org/src/base-prerelease/R-devel_2019-04-20_r76407.tar.gz) and all make check tests are successful. Any ideas? Here is my sessionInfo() from the revision 76407 build: R Under development (unstable) (2019-04-20 r76407) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.2 LTS Matrix products: default BLAS: /home/btyner/R-devel_2019-04-20_r76407/lib64/R/lib/libRblas.so LAPACK: /home/btyner/R-devel_2019-04-20_r76407/lib64/R/lib/libRlapack.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.7.0 Regards, Ben __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R-devel (rev 76409) fails 'make check': non-generic function 'isSymmetric' given to findMethods()
On 21/04/2019 4:56 p.m., Benjamin Tyner wrote: Hello, Most likely I'm doing something wrong, but am at a loss as to what the issue is. I have a clean checkout of trunk here: > ~/svn/r-devel/R$ svn info Path: . Working Copy Root Path: /home/btyner/svn/r-devel/R URL: https://svn.r-project.org/R/trunk Relative URL: ^/trunk Repository Root: https://svn.r-project.org/R Repository UUID: 00db46b3-68df-0310-9c12-caf00c1e9a41 Revision: 76409 Node Kind: directory Schedule: normal Last Changed Author: ripley Last Changed Rev: 76409 Last Changed Date: 2019-04-21 06:32:24 -0400 (Sun, 21 Apr 2019) I then ran: mkdir ~/svn/R-devel-build cd ~/svn/R-devel-build ../r-devel/R/configure --prefix=/home/btyner/R-76409 --enable-R-shlib --with-blas --with-lapack --with-readline --without-recommended-packages make make check which fails at reg-tests-1d.R; the failure being: > ## str() now even works with invalid objects: > moS <- mo <- findMethods("isSymmetric") Error in findMethods("isSymmetric") : (converted from warning) non-generic function 'isSymmetric' given to findMethods() Execution halted Likely the problem is that you don't have the recommended packages loaded. When I was running tests regularly, they were required. Later, I think they became optional. Perhaps a new test has been added that once again assumes the required packages are installed. Duncan Murdoch I am able to build revision 76407 from source just fine (using https://cran.r-project.org/src/base-prerelease/R-devel_2019-04-20_r76407.tar.gz) and all make check tests are successful. Any ideas? Here is my sessionInfo() from the revision 76407 build: R Under development (unstable) (2019-04-20 r76407) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 18.04.2 LTS Matrix products: default BLAS: /home/btyner/R-devel_2019-04-20_r76407/lib64/R/lib/libRblas.so LAPACK: /home/btyner/R-devel_2019-04-20_r76407/lib64/R/lib/libRlapack.so locale: [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 [7] LC_PAPER=en_US.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base loaded via a namespace (and not attached): [1] compiler_3.7.0 Regards, Ben __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R-devel (rev 76409) fails 'make check': non-generic function 'isSymmetric' given to findMethods()
Duncan that does indeed look to be the case. Many thanks! In particular, tests/reg-tests-1d.R optionally loads the Matrix namespace which allows the test to succeed. Compare: ~/R-rc_2019-04-21_r76409/bin/Rscript -e "options(warn=2); library(Matrix); res <- findMethods('isSymmetric'); print('success')" [1] "success" versus ~/R-rc_2019-04-21_r76409/bin/Rscript -e "options(warn=2); res <- findMethods('isSymmetric'); print('success')" Error in findMethods("isSymmetric") : (converted from warning) non-generic function 'isSymmetric' given to findMethods() Execution halted On 4/21/19 7:47 PM, Duncan Murdoch wrote: Likely the problem is that you don't have the recommended packages loaded. When I was running tests regularly, they were required. Later, I think they became optional. Perhaps a new test has been added that once again assumes the required packages are installed. Duncan Murdoch __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] R-devel (rev 76409) fails 'make check': non-generic function 'isSymmetric' given to findMethods()
Looks fixed as of revision 76417; thanks Brian! On 4/21/19 9:02 PM, Benjamin Tyner wrote: Duncan that does indeed look to be the case. Many thanks! In particular, tests/reg-tests-1d.R optionally loads the Matrix namespace which allows the test to succeed. Compare: ~/R-rc_2019-04-21_r76409/bin/Rscript -e "options(warn=2); library(Matrix); res <- findMethods('isSymmetric'); print('success')" [1] "success" versus ~/R-rc_2019-04-21_r76409/bin/Rscript -e "options(warn=2); res <- findMethods('isSymmetric'); print('success')" Error in findMethods("isSymmetric") : (converted from warning) non-generic function 'isSymmetric' given to findMethods() Execution halted On 4/21/19 7:47 PM, Duncan Murdoch wrote: Likely the problem is that you don't have the recommended packages loaded. When I was running tests regularly, they were required. Later, I think they became optional. Perhaps a new test has been added that once again assumes the required packages are installed. Duncan Murdoch __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel