[Rd] install_github and survival
I treat CRAN as the main repository for survival, but I have also had a github (therneau/survival) version for a couple of years. It has a vignette2 directory, for instance, that contains extra vignettes that either take too long to run or depend on other packages. It also gets updated more often than CRAN (though those updates mght not be as well tested yet). In any case, since it is there, people will of course run install_github against it. I've added a config script to do the one extra step necessary, but when I try install_github it fails. I'm clearly doing something wrong. If someone were willing to contribute a fix I would be most grateful. survival3.1-0 is almost ready for CRAN, by the way. Reverse dependency checks of hdnom turned up one last thing to repair... Terry Therneau [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] install_github and survival
I cloned therneau/survival and the installation failed since there is no definition for exported function survfit(). A file seems to be missing - there is survfit0() and survfit0.R but, compared to CRAN, no survfit.R. Georgi Boshnakov -- Message: 1 Date: Thu, 05 Sep 2019 12:53:11 -0500 From: "Therneau, Terry M., Ph.D." To: "r-devel@r-project.org" Subject: [Rd] install_github and survival Message-ID: <771925$cbi...@ironport10.mayo.edu> Content-Type: text/plain; charset="utf-8" I treat CRAN as the main repository for survival, but I have also had a github (therneau/survival) version for a couple of years. It has a vignette2 directory, for instance, that contains extra vignettes that either take too long to run or depend on other packages. It also gets updated more often than CRAN (though those updates mght not be as well tested yet). In any case, since it is there, people will of course run install_github against it. I've added a config script to do the one extra step necessary, but when I try install_github it fails. I'm clearly doing something wrong. If someone were willing to contribute a fix I would be most grateful. survival3.1-0 is almost ready for CRAN, by the way. Reverse dependency checks of hdnom turned up one last thing to repair... Terry Therneau [[alternative HTML version deleted]] -- Subject: Digest Footer ___ R-devel@r-project.org mailing list DIGESTED https://stat.ethz.ch/mailman/listinfo/r-devel -- End of R-devel Digest, Vol 199, Issue 6 *** __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] install_github and survival
You got the same error 2 years ago. It seems some data files are missing. https://github.com/therneau/survival/issues/12 F. [[alternative HTML version deleted]] __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] install_github and survival
I just sent a PR that makes a few small changes to the package and fixes the installation with `install_github()` (and also `R CMD INSTALL`) and other ways of installing the package. https://github.com/therneau/survival/pull/84 Jim On Thu, Sep 5, 2019 at 1:53 PM Therneau, Terry M., Ph.D. via R-devel wrote: > > I treat CRAN as the main repository for survival, but I have also had a github > (therneau/survival) version for a couple of years. It has a vignette2 > directory, for > instance, that contains extra vignettes that either take too long to run or > depend on > other packages. It also gets updated more often than CRAN (though those > updates mght not > be as well tested yet). > > In any case, since it is there, people will of course run install_github > against it. > I've added a config script to do the one extra step necessary, but when I try > install_github it fails. I'm clearly doing something wrong. If someone > were willing to > contribute a fix I would be most grateful. > > survival3.1-0 is almost ready for CRAN, by the way. Reverse dependency > checks of hdnom > turned up one last thing to repair... > > > Terry Therneau > > > [[alternative HTML version deleted]] > > __ > R-devel@r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
