Re: [Rd] uncompressed saves warning
On 22.03.2012 13:43, Michael Friendly wrote: On 3/21/2012 1:22 PM, Uwe Ligges wrote: What is the equivalent R command to compress these files in my project tree? Michael, if you use R CMD build --resave-data to build the tar archive, the versions therein are recompressed. But AFAIK, in StatET, R CMD build builds a separate .tar.gz file under c:/eclipse, and does not affect the project directory where these files are stored and sync'd with R-Forge. Otherwise, you can also open the files and resave them via save() and appropriate arguments. I exported the .rda files to c:/R/data and ran load(gfrance.rda) load(gfrance85.rda) save(gfrance, file=gfrance.RData, compress=xz) Error in xzfile(file, wb, compression = 9) : cannot open the connection In addition: Warning message: In xzfile(file, wb, compression = 9) : cannot initialize lzma encoder, error 5 Why doesn't this work? Don't know, works for me with R-2.14.2 (at least with another object - I do noit have yours) but tested with R-2.14.2 and R-2.15.0 RC, I do not have an R-2.14.1 around any more. Uwe save(gfrance, file=gfrance.RData, compress=TRUE) The above works, but only compresses a 300K file to 299K Or use resaveRdaFiles() in package tools to runn it on a whole folder automatically. sessionInfo() R version 2.14.1 (2011-12-22) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252 LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] p3d_0.02-4 mgcv_1.7-13 car_2.0-12 nnet_7.3-1 rgl_0.92.798 vcd_1.2-13 colorspace_1.1-1 MASS_7.3-17 loaded via a namespace (and not attached): [1] lattice_0.20-6 Matrix_1.0-4 nlme_3.1-103 tools_2.14.1 __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] uncompressed saves warning
On 3/21/2012 1:22 PM, Uwe Ligges wrote: What is the equivalent R command to compress these files in my project tree? Michael, if you use R CMD build --resave-data to build the tar archive, the versions therein are recompressed. But AFAIK, in StatET, R CMD build builds a separate .tar.gz file under c:/eclipse, and does not affect the project directory where these files are stored and sync'd with R-Forge. Otherwise, you can also open the files and resave them via save() and appropriate arguments. I exported the .rda files to c:/R/data and ran load(gfrance.rda) load(gfrance85.rda) save(gfrance, file=gfrance.RData, compress=xz) Error in xzfile(file, wb, compression = 9) : cannot open the connection In addition: Warning message: In xzfile(file, wb, compression = 9) : cannot initialize lzma encoder, error 5 Why doesn't this work? save(gfrance, file=gfrance.RData, compress=TRUE) The above works, but only compresses a 300K file to 299K Or use resaveRdaFiles() in package tools to runn it on a whole folder automatically. sessionInfo() R version 2.14.1 (2011-12-22) Platform: i386-pc-mingw32/i386 (32-bit) locale: [1] LC_COLLATE=English_United States.1252 LC_CTYPE=English_United States.1252LC_MONETARY=English_United States.1252 [4] LC_NUMERIC=C LC_TIME=English_United States.1252 attached base packages: [1] grid stats graphics grDevices utils datasets methods base other attached packages: [1] p3d_0.02-4 mgcv_1.7-13 car_2.0-12 nnet_7.3-1 rgl_0.92.798 vcd_1.2-13 colorspace_1.1-1 MASS_7.3-17 loaded via a namespace (and not attached): [1] lattice_0.20-6 Matrix_1.0-4 nlme_3.1-103 tools_2.14.1 -- Michael Friendly Email: friendly AT yorku DOT ca Professor, Psychology Dept. York University Voice: 416 736-5115 x66249 Fax: 416 736-5814 4700 Keele StreetWeb: http://www.datavis.ca Toronto, ONT M3J 1P3 CANADA __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
Re: [Rd] uncompressed saves warning
On 21.03.2012 14:58, Michael Friendly wrote: [Env: Windows XP Pro / R 2.14.1 / StatET / R-Forge] A package of mine now generates a Warning under R 2.15.0 beta on CRAN checks: * checking data for ASCII and uncompressed saves ... WARNING Note: significantly better compression could be obtained by using R CMD build --resave-data old_size new_size compress gfrance.rda 300Kb 179Kb xz gfrance85.rda 295Kb 176Kb xz What is the equivalent R command to compress these files in my project tree? Michael, if you use R CMD build --resave-data to build the tar archive, the versions therein are recompressed. Otherwise, you can also open the files and resave them via save() and appropriate arguments. Or use resaveRdaFiles() in package tools to runn it on a whole folder automatically. Best, uwe __ R-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-devel
