Re: [Rd] localeToCharset error for Thai locale (PR#7799)

2005-04-19 Thread ripley
Please try R-patched, where this is already fixed.

On Wed, 20 Apr 2005 [EMAIL PROTECTED] wrote:

> Full_Name: Hutcha Sriplung
> Version: 2.1.0
> OS: windows
> Submission from: (NULL) (202.12.74.9)
>
>
> In R-2.1.0, I found that 'example' function does not work properly and report 
> an
> error message as shown below on a Windows machine (running r-devel release) 
> but
> not on Linux.
>
>> example(attach)
> Error in switch(x[2], "1250" = return("ISO 8859-2"), "1251" = 
> return("KOI8-U"),
> : argument is missing, with no default
>
> I tracked the source codes and finally found minor mistakes with Thai language
> management on Windows platform in 'localeToCharset' function.
>
> file: /R-2.1.0/src/library/utils/iconv.R
> line: 50
> if (en %in% "th") <<-- Should be "tg"-tajik???
>return("KOI8-T")
>
> "th" is for Thai (TIS-620; already defined on line 48-49).
>
> line: 53-56
> "874" = return("TIS 620")   <<-- Should be added???
> A default return should also be stated???
>
> Note:
>> Sys.getlocale("LC_CTYPE")
> [1] "Thai_Thailand.874"
>
> 'example' works fine on a Linux machine.
>
> __
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>
>

-- 
Brian D. Ripley,  [EMAIL PROTECTED]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

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[Rd] localeToCharset error for Thai locale (PR#7799)

2005-04-19 Thread hutcha . s
Full_Name: Hutcha Sriplung
Version: 2.1.0
OS: windows
Submission from: (NULL) (202.12.74.9)


In R-2.1.0, I found that 'example' function does not work properly and report an
error message as shown below on a Windows machine (running r-devel release) but
not on Linux.

> example(attach)
Error in switch(x[2], "1250" = return("ISO 8859-2"), "1251" = return("KOI8-U"), 
: argument is missing, with no default

I tracked the source codes and finally found minor mistakes with Thai language
management on Windows platform in 'localeToCharset' function.

file: /R-2.1.0/src/library/utils/iconv.R 
line: 50
if (en %in% "th")   <<-- Should be "tg"-tajik??? 
return("KOI8-T")

"th" is for Thai (TIS-620; already defined on line 48-49).

line: 53-56
"874" = return("TIS 620")   <<-- Should be added???   
A default return should also be stated???

Note: 
> Sys.getlocale("LC_CTYPE")
[1] "Thai_Thailand.874"

'example' works fine on a Linux machine.

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[Rd] R-2.1.0 compilation with Intel icc and ifort

2005-04-19 Thread Christophe Pouzat
Guys,
I'm using a Linux PC (Pentium IV, Mandrake 10.1) and I've just tried to 
compile the new R-2.1.0 release with both gcc/g77 (3.4.1) and icc/ifort 
(8.1).
Of course everything went fine with the GNU compilers.
After checking the archives of the mailing list I tried compiling with 
the Intel compilers using the following options:

CFLAGS = '-O2 -mp -prec_div'
CXXFLAGS = '-O2 -mp -prec_div'
FFLAGS = '-C90 -w90 -w95 -mp -prec_div'
CPIPCFLAGS = -shared
CXXPIPCFLAGS = -shared
FPIPCFLAGS = -shared
SHLIB_LDFLAGS = -shared
SHLIB_CXXLDFLAGS = -shared
--with-blas = '-lmkl -lguide -lpthread'
The compilation went fine (just a few warnings). There was apparently a 
single problem when I ran "make check". It was in:

d-p-q-r-tests.R
at line 469:
All.eq(dpois(  10, 2e-308, log=TRUE), -7100.13502718914)
which returned -Inf with the Intel compiled version.
I don't think it's a big deal but I'd like to know if you have ideas 
and/or suggestions.

Thanks,
Christophe.
--
A Master Carpenter has many tools and is expert with most of them.If you
only know how to use a hammer, every problem starts to look like a nail.
Stay away from that trap.
Richard B Johnson.
--
Christophe Pouzat
Laboratoire de Physiologie Cerebrale
CNRS UMR 8118
UFR biomedicale de l'Universite Paris V
45, rue des Saints Peres
75006 PARIS
France
tel: +33 (0)1 42 86 38 28
fax: +33 (0)1 42 86 38 30
web: www.biomedicale.univ-paris5.fr/physcerv/C_Pouzat.html
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Re: [Rd] Re: [R] pl/R and MacOS X using R binary

2005-04-19 Thread stefano iacus
On 19/apr/05, at 16:40, Joe Conway wrote:
Sean Davis wrote:
On Apr 19, 2005, at 8:56 AM, Prof Brian Ripley wrote:
Please do consult the posting guide as to the right place.  (I've 
moved this to R-devel and included Joe Conway. Joe: perhaps you 
could make you email address more readily available in the PL/R 
pages.)
Yes, I'll do that. Sorry for the confusion.
Actually, Joe has been quite helpful in this regard and the question 
has come up on his pl/R email list before, but without resolution, as 
far as I could tell (but again, I could be sadly mistaken).  I 
thought that posting to r-help (with the caveat that I was perhaps 
off-topic) would clarify things for me a bit.  It has done just that 
and I really appreciate your willingness to answer the off-topic post 
and move it to the appropriate forum.
The Makefile for PL/R actually does attempt to use the dylib, and at 
one point (at least) worked according to a report that I received. 
There have been a couple of reported issues with MacOS X since then 
though. Part of my problem in resolving this has been lack of an OS X 
machine that I can debug on.
Joe, I can provide one login on one of my testing machines here and/or 
help for debugging.
stefano

Joe
p.s. I apologize in advance for slow responses -- I just arrived 9 
timezones away from home at the start of a 2 week business trip.

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Re: [Rd] building recommended packages on Windows

2005-04-19 Thread Hiroyuki Kawakatsu
On Tue, 19 Apr 2005, Uwe Ligges wrote:

> Maybe you forgot to unpack with the correct tools?
>tar xfz R-2.1.0.tar.gz
> should do the trick using tar from the tools provided un Duncan
> Murdoch's page, but many other (un)compress tools under Windows cannot
> deal with the links (e.g. boot.tgz) provided in the Recommended
> packages' subdirectory.

Arg. Uwe is of course right. Looking at the Recommended packages
directory, I did notice that some of the links had different icons from
the other link files. I must have unpacked it with cygwin, not with
Duncan's tools as instructed in R-admin. After redoing the unpacking,
everything went fine. Many thanks for spotting my stupidity,

h.
--
Hiroyuki Kawakatsu
School of Management and Economics
25 University Square
Queen's University, Belfast
Belfast BT7 1NN
Northern Ireland
United Kingdom
Tel +44 (0)28 9097 3290
Fax +44 (0)28 9033 5156

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[Rd] Re: [R] pl/R and MacOS X using R binary

2005-04-19 Thread Joe Conway
Sean Davis wrote:
On Apr 19, 2005, at 8:56 AM, Prof Brian Ripley wrote:
Please do consult the posting guide as to the right place.  (I've 
moved this to R-devel and included Joe Conway. Joe: perhaps you could 
make you email address more readily available in the PL/R pages.)
Yes, I'll do that. Sorry for the confusion.
Actually, Joe has been quite helpful in this regard and the question has 
come up on his pl/R email list before, but without resolution, as far as 
I could tell (but again, I could be sadly mistaken).  I thought that 
posting to r-help (with the caveat that I was perhaps off-topic) would 
clarify things for me a bit.  It has done just that and I really 
appreciate your willingness to answer the off-topic post and move it to 
the appropriate forum.
The Makefile for PL/R actually does attempt to use the dylib, and at one 
point (at least) worked according to a report that I received. There 
have been a couple of reported issues with MacOS X since then though. 
Part of my problem in resolving this has been lack of an OS X machine 
that I can debug on.

Joe
p.s. I apologize in advance for slow responses -- I just arrived 9 
timezones away from home at the start of a 2 week business trip.

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[Rd] Re: [R] pl/R and MacOS X using R binary

2005-04-19 Thread Sean Davis
On Apr 19, 2005, at 8:56 AM, Prof Brian Ripley wrote:
[Moved from R-help.]
On Tue, 19 Apr 2005, Sean Davis wrote:
I'm sorry if this is too off-topic--feel free to ignore.  I am 
interested in using pl/R, an amazing "plugin" for the postgresql 
database.  As is typical of these types of applications, pl/R needs 
to link against a shared library. However, it appears that the MacOS 
R binary does not build a static (.so) shared library.
Excuse me, but a .so is a DSO, a Dynamic _Shared_ Object.  What does 
`static' have to do with this?  libR is a dynamic library, actually 
libR$(DYLIB_EXT) with values of .so. .sl and .dylib being known.

My misunderstanding, you are correct in that assumption.  Your 
explanation helps a lot.

Is there an accepted, general way (read, a way that works) for 
linking against R (presumably the dylib) on the Mac?
Yes, since that is how the GUI on MacOS X works.
My guess is that you think that pl/R requires libR.so: if correct that 
is a false assumption made somewhere along the line, and the best 
thing to do is to consult the author.  In any case

This is again my misunderstanding.
Please do consult the posting guide as to the right place.  (I've 
moved this to R-devel and included Joe Conway. Joe: perhaps you could 
make you email address more readily available in the PL/R pages.)

Actually, Joe has been quite helpful in this regard and the question 
has come up on his pl/R email list before, but without resolution, as 
far as I could tell (but again, I could be sadly mistaken).  I thought 
that posting to r-help (with the caveat that I was perhaps off-topic) 
would clarify things for me a bit.  It has done just that and I really 
appreciate your willingness to answer the off-topic post and move it to 
the appropriate forum.

Sean
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[Rd] Re: [R] pl/R and MacOS X using R binary

2005-04-19 Thread Prof Brian Ripley
[Moved from R-help.]
On Tue, 19 Apr 2005, Sean Davis wrote:
I'm sorry if this is too off-topic--feel free to ignore.  I am interested in 
using pl/R, an amazing "plugin" for the postgresql database.  As is typical 
of these types of applications, pl/R needs to link against a shared library. 
However, it appears that the MacOS R binary does not build a static (.so) 
shared library.
Excuse me, but a .so is a DSO, a Dynamic _Shared_ Object.  What does 
`static' have to do with this?  libR is a dynamic library, actually 
libR$(DYLIB_EXT) with values of .so. .sl and .dylib being known.

Is there an accepted, general way (read, a way that works) 
for linking against R (presumably the dylib) on the Mac?
Yes, since that is how the GUI on MacOS X works.
My guess is that you think that pl/R requires libR.so: if correct that is 
a false assumption made somewhere along the line, and the best thing to do 
is to consult the author.  In any case

http://www.joeconway.com/plr/doc/plr-install.html
just says
  Tip:  R headers are required. Download and install R prior to building
   PL/R. R must have been built with the --enable-R-shlib option when it
   was configured, in order for the libR shared object library to be available.
Please do consult the posting guide as to the right place.  (I've moved 
this to R-devel and included Joe Conway. Joe: perhaps you could make you 
email address more readily available in the PL/R pages.)

--
Brian D. Ripley,  [EMAIL PROTECTED]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595
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Re: [Rd] building recommended packages on Windows

2005-04-19 Thread Uwe Ligges
Hiroyuki Kawakatsu wrote:
Hi,
I am building 2.1.0 (re-release version, if that matters) on a Windows XP
machine. Following the instructions 3.1 "Building from source" in
R-admin.html, I managed to get up to 3.1.6. But when I try to build the
recommended packages, I get
C:\hiro\codes\proj\R-2.1.0\src\gnuwin32>make recommended
--- Unpacking recommended packages
 VR
make[1]: *** No rule to make target `../library/boot/DESCRIPTION'.  Stop.
make: *** [unpack-recommended] Error 1
What did I do wrong? In /library/Recommended I do see boot_1.2-22.tar.gz
but I don't see the /boot subdirectory in /library. Thanks for any help,
Maybe you forgot to unpack with the correct tools?
  tar xfz R-2.1.0.tar.gz
should do the trick using tar from the tools provided un Duncan 
Murdoch's page, but many other (un)compress tools under Windows cannot 
deal with the links (e.g. boot.tgz) provided in the Recommended 
packages' subdirectory.

Uwe Ligges

h.
--
Hiroyuki Kawakatsu
School of Management and Economics
25 University Square
Queen's University, Belfast
Belfast BT7 1NN
Northern Ireland
United Kingdom
Tel +44 (0)28 9097 3290
Fax +44 (0)28 9033 5156
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Re: [Rd] building recommended packages on Windows

2005-04-19 Thread Duncan Murdoch
Hiroyuki Kawakatsu wrote:
Hi,
I am building 2.1.0 (re-release version, if that matters) on a Windows XP
machine. Following the instructions 3.1 "Building from source" in
R-admin.html, I managed to get up to 3.1.6. But when I try to build the
recommended packages, I get
C:\hiro\codes\proj\R-2.1.0\src\gnuwin32>make recommended
--- Unpacking recommended packages
 VR
make[1]: *** No rule to make target `../library/boot/DESCRIPTION'.  Stop.
make: *** [unpack-recommended] Error 1
What did I do wrong? In /library/Recommended I do see boot_1.2-22.tar.gz
but I don't see the /boot subdirectory in /library. Thanks for any help,
Did you put the tar.gz file in the right place?  It should be in 
src/library/Recommended, which is where "make rsync-recommended" should 
put it, not library/Recommended, which won't exist in a correct build.

Duncan Murdoch
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[Rd] building recommended packages on Windows

2005-04-19 Thread Hiroyuki Kawakatsu
Hi,

I am building 2.1.0 (re-release version, if that matters) on a Windows XP
machine. Following the instructions 3.1 "Building from source" in
R-admin.html, I managed to get up to 3.1.6. But when I try to build the
recommended packages, I get

C:\hiro\codes\proj\R-2.1.0\src\gnuwin32>make recommended
--- Unpacking recommended packages
 VR
make[1]: *** No rule to make target `../library/boot/DESCRIPTION'.  Stop.
make: *** [unpack-recommended] Error 1

What did I do wrong? In /library/Recommended I do see boot_1.2-22.tar.gz
but I don't see the /boot subdirectory in /library. Thanks for any help,

h.
--
Hiroyuki Kawakatsu
School of Management and Economics
25 University Square
Queen's University, Belfast
Belfast BT7 1NN
Northern Ireland
United Kingdom
Tel +44 (0)28 9097 3290
Fax +44 (0)28 9033 5156

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Re: [Rd] chi-square test

2005-04-19 Thread Dimitris Rizopoulos
if you print "chisq.test()" you'll see when this warning message 
appears (i.e., if any expected count is less than 5, in which case it 
is known that the approximation to the Chi-squared distribution may 
not be adequate).

Alternatively, you could simulate to approximate the reference 
distribution of the statistic and obtain an estimation of the p-value 
using:

chisq.test(matrix(c(20.1, 18.5, 2.6, 32.9, 23.5, 5.4), nc = 2), 
simulate.p.value = TRUE)

I hope it helps.
Best,
Dimitris
p.s., you should send this message to r-help and not r-devel.

Dimitris Rizopoulos
Ph.D. Student
Biostatistical Centre
School of Public Health
Catholic University of Leuven
Address: Kapucijnenvoer 35, Leuven, Belgium
Tel: +32/16/336899
Fax: +32/16/337015
Web: http://www.med.kuleuven.ac.be/biostat/
http://www.student.kuleuven.ac.be/~m0390867/dimitris.htm

- Original Message - 
From: "Benjamin Chan [BRE]" <[EMAIL PROTECTED]>
To: 
Sent: Tuesday, April 19, 2005 10:47 AM
Subject: [Rd] chi-square test


a warning message appears when i use the chisq.test ,but it doesnt
appear everytime, why?
"Warning message:
Chi-squared approximation may be incorrect in:
chisq.test(matrix(c(20.1, 18.5, 2.6, 32.9, 23.5, 5.4), nc = 2)) "
why does the warning message appear, please?
Thank you very much
here is the data which I have tried appear and not appear warning
message
have warning message
(1.3,4.9,12.6,10.5,5.5,6.5,4.7,9.8,10.3,23.2,7.3,6.6)
(13.8,8.4,8.7,10.4,25.5,28.7,2.5,5.1)
(20.1,18.5,2.6,32.9,23.5,5.4)
doesnt have warning message
(32.7,8.6,2561.5,2726.5)
(44.4,17.4,2561.5,2726.5)
(44.4,17.4,32.7,8.6)
(13.9,22.3,5.1,17.4,32.3,12)
(8.1,5.2,13.8,11.5,2.6,15.8,15.5,9.6,6.7,14.2)
(13.9,17.4,22.3,1740,2230,1390)
[[alternative HTML version deleted]]
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[Rd] chi-square test

2005-04-19 Thread Benjamin Chan [BRE]
 
a warning message appears when i use the chisq.test ,but it doesnt
appear everytime, why?
"Warning message: 
Chi-squared approximation may be incorrect in:
chisq.test(matrix(c(20.1, 18.5, 2.6, 32.9, 23.5, 5.4), nc = 2)) "
 
why does the warning message appear, please?
Thank you very much
here is the data which I have tried appear and not appear warning
message
 
have warning message
(1.3,4.9,12.6,10.5,5.5,6.5,4.7,9.8,10.3,23.2,7.3,6.6)
(13.8,8.4,8.7,10.4,25.5,28.7,2.5,5.1)
(20.1,18.5,2.6,32.9,23.5,5.4)
 
doesnt have warning message
(32.7,8.6,2561.5,2726.5)
(44.4,17.4,2561.5,2726.5)
(44.4,17.4,32.7,8.6)
(13.9,22.3,5.1,17.4,32.3,12)
(8.1,5.2,13.8,11.5,2.6,15.8,15.5,9.6,6.7,14.2)
(13.9,17.4,22.3,1740,2230,1390)

[[alternative HTML version deleted]]

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