[R] Use of different colours in plot

2014-07-18 Thread Stefano Sofia
Dear R list users,
I have a data frame called catchment like

year season rainfall colour
1953 1 409.5 black
1953 2 145.3 black
1953 3 285.6 red
1953 4 275.0 black
1954 1 273.8 black
1954 2 342.8 blue
1954 3 167.6 black
1954 4 341.1 black
1955 1 182.3 blue
1955 2 211.8 black
1955 3 222.6 black
1955 4 522.1 black
1956 1 248.7 red
1956 2 244.9 black
...

and I would like to plot it with the colours specified in the column colour (at 
the moment the colours are three: black, red and blue. I would like to have the 
possibility to add oher colours to this list).
With

plot(catchment$year, catchment$rainfall, main=River Aso, xlab=years, 
ylab=mm, type=p, col=catchment$colour)

the colours displayed in the graph are not the ones I have chosen.
I looked for the answer, which probably involves a transformation to factor, 
but I am not able to understand well the solution.
Could somebody help me?

Thank you
Stefano Sofia




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Re: [R] Model for lm keeps producing an error

2014-07-18 Thread PIKAL Petr
Hi

No reproducible example so lust general comments.

1. Your function does not return any value
2. You do not get errors but only warnings
3. In your function you get results only for X1. Is it really your intention?
4. I do not know mclapply but from quick look into help page parameters you use 
for your function shall be named vector or list so something like

list(meth_matrix=cord_betas, exposure=filtered_pheno$Number3Mth, 
X1=covariates$k032,
X2=covariates$k021, X3=covariates$kz029, batch=pdata.B1221.cord$BCDPlate)

I would just try to use your function interactively on one item from
setNames(seq_len(ncol(cord_betas)),dimnames(cord_betas)[[2]])

Do you get result?

Regards
Petr

 -Original Message-
 From: r-help-boun...@r-project.org [mailto:r-help-bounces@r-
 project.org] On Behalf Of Jessica Timms
 Sent: Thursday, July 17, 2014 1:32 PM
 To: r-help@r-project.org
 Subject: [R] Model for lm keeps producing an error

 Hi,



 I still seem to be getting errors from trying to run my altered R
 script, any advice?



 Thanks

 Jess



 Model1A = function(meth_matrix,exposure, X1, X2, X3, batch) {
 +
 +   mod = lm(methcol ~ exposure+X1+X2+X3+batch, data = meth_matrix)
 +
 +
 +   res=coef(summary(mod))[2,]
 +
 +
 + }
 
 
  ##Run model1A
 
  system.time(indiv.results -
 mclapply(setNames(seq_len(ncol(cord_betas)),
 dimnames(cord_betas)[[2]]), Model1A, meth_matrix=cord_betas,
 exposure=filtered_pheno$Number3Mth, X1=covariates$k032,
 X2=covariates$k021, X3=covariates$kz029,
 batch=pdata.B1221.cord$BCDPlate))
user  system elapsed
   0.044   0.526   0.272
 Warning message:
 In mclapply(setNames(seq_len(ncol(cord_betas)),
 dimnames(cord_betas)[[2]]),  :
   all scheduled cores encountered errors in user code

 


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Re: [R] Use of different colours in plot

2014-07-18 Thread Jim Lemon
On Fri, 18 Jul 2014 07:07:04 AM Stefano Sofia wrote:
 Dear R list users,
 I have a data frame called catchment like
 
 year season rainfall colour
 1953 1 409.5 black
 1953 2 145.3 black
 1953 3 285.6 red
 1953 4 275.0 black
 1954 1 273.8 black
 1954 2 342.8 blue
 1954 3 167.6 black
 1954 4 341.1 black
 1955 1 182.3 blue
 1955 2 211.8 black
 1955 3 222.6 black
 1955 4 522.1 black
 1956 1 248.7 red
 1956 2 244.9 black
 ...
 
 and I would like to plot it with the colours specified in the column 
colour
 (at the moment the colours are three: black, red and blue. I would 
like to
 have the possibility to add oher colours to this list).
 With
 
 plot(catchment$year, catchment$rainfall, main=River Aso, 
xlab=years,
 ylab=mm, type=p, col=catchment$colour)
 
 the colours displayed in the graph are not the ones I have chosen.
 I looked for the answer, which probably involves a transformation to 
factor,
 but I am not able to understand well the solution.
 Could somebody help me?
 
 Thank you
 Stefano Sofia
 
Hi Stefano,
Try this:

plot(catchment$year, catchment$rainfall,
 main=River Aso, xlab=years,
 ylab=mm, type=p,
 col=as.character(catchment$colour))

Jim

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Re: [R] Use of different colours in plot

2014-07-18 Thread Stefano Sofia
Thank you Jim, perfect.

Da: Jim Lemon [j...@bitwrit.com.au]
Inviato: venerdì 18 luglio 2014 10.22
A: r-help@r-project.org
Cc: Stefano Sofia
Oggetto: Re: [R] Use of different colours in plot

On Fri, 18 Jul 2014 07:07:04 AM Stefano Sofia wrote:
 Dear R list users,
 I have a data frame called catchment like

 year season rainfall colour
 1953 1 409.5 black
 1953 2 145.3 black
 1953 3 285.6 red
 1953 4 275.0 black
 1954 1 273.8 black
 1954 2 342.8 blue
 1954 3 167.6 black
 1954 4 341.1 black
 1955 1 182.3 blue
 1955 2 211.8 black
 1955 3 222.6 black
 1955 4 522.1 black
 1956 1 248.7 red
 1956 2 244.9 black
 ...

 and I would like to plot it with the colours specified in the column
colour
 (at the moment the colours are three: black, red and blue. I would
like to
 have the possibility to add oher colours to this list).
 With

 plot(catchment$year, catchment$rainfall, main=River Aso,
xlab=years,
 ylab=mm, type=p, col=catchment$colour)

 the colours displayed in the graph are not the ones I have chosen.
 I looked for the answer, which probably involves a transformation to
factor,
 but I am not able to understand well the solution.
 Could somebody help me?

 Thank you
 Stefano Sofia

Hi Stefano,
Try this:

plot(catchment$year, catchment$rainfall,
 main=River Aso, xlab=years,
 ylab=mm, type=p,
 col=as.character(catchment$colour))

Jim




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alla ricezione. I messaggi di posta elettronica per i client di Regione Marche 
possono contenere informazioni confidenziali e con privilegi legali. Se non si 
è il destinatario specificato, non leggere, copiare, inoltrare o archiviare 
questo messaggio. Se si è ricevuto questo messaggio per errore, inoltrarlo al 
mittente ed eliminarlo completamente dal sistema del proprio computer. Ai sensi 
dell’art. 6 della DGR n. 1394/2008 si segnala che, in caso di necessità ed 
urgenza, la risposta al presente messaggio di posta elettronica può essere 
visionata da persone estranee al destinatario.
IMPORTANT NOTICE: This e-mail message is intended to be received only by 
persons entitled to receive the confidential information it may contain. E-mail 
messages to clients of Regione Marche may contain information that is 
confidential and legally privileged. Please do not read, copy, forward, or 
store this message unless you are an intended recipient of it. If you have 
received this message in error, please forward it to the sender and delete it 
completely from your computer system.
__
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Re: [R] Use of different colours in plot

2014-07-18 Thread João Azevedo Patrício

Em 18-07-2014 08:07, Stefano Sofia escreveu:

Dear R list users,
I have a data frame called catchment like

year season rainfall colour
1953 1 409.5 black
1953 2 145.3 black
1953 3 285.6 red
1953 4 275.0 black
1954 1 273.8 black
1954 2 342.8 blue
1954 3 167.6 black
1954 4 341.1 black
1955 1 182.3 blue
1955 2 211.8 black
1955 3 222.6 black
1955 4 522.1 black
1956 1 248.7 red
1956 2 244.9 black
...

and I would like to plot it with the colours specified in the column colour (at 
the moment the colours are three: black, red and blue. I would like to have the 
possibility to add oher colours to this list).
With

plot(catchment$year, catchment$rainfall, main=River Aso, xlab=years, ylab=mm, 
type=p, col=catchment$colour)

the colours displayed in the graph are not the ones I have chosen.
I looked for the answer, which probably involves a transformation to factor, 
but I am not able to understand well the solution.
Could somebody help me?

Thank you
Stefano Sofia




AVVISO IMPORTANTE: Questo messaggio di posta elettronica può contenere 
informazioni confidenziali, pertanto è destinato solo a persone autorizzate 
alla ricezione. I messaggi di posta elettronica per i client di Regione Marche 
possono contenere informazioni confidenziali e con privilegi legali. Se non si 
è il destinatario specificato, non leggere, copiare, inoltrare o archiviare 
questo messaggio. Se si è ricevuto questo messaggio per errore, inoltrarlo al 
mittente ed eliminarlo completamente dal sistema del proprio computer. Ai sensi 
dell’art. 6 della DGR n. 1394/2008 si segnala che, in caso di necessità ed 
urgenza, la risposta al presente messaggio di posta elettronica può essere 
visionata da persone estranee al destinatario.
IMPORTANT NOTICE: This e-mail message is intended to be received only by 
persons entitled to receive the confidential information it may contain. E-mail 
messages to clients of Regione Marche may contain information that is 
confidential and legally privileged. Please do not read, copy, forward, or 
store this message unless you are an intended recipient of it. If you have 
received this message in error, please forward it to the sender and delete it 
completely from your computer system.

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and provide commented, minimal, self-contained, reproducible code.

did you try the palette() function?

you can define a new like:

 palette(c(black,red,blue))

then you can call the colors by numbers (1,2,3)

replace the color name in the column by the respective 1,2,3 numbers ant 
give a try.


I haven't try it, but it's the natural way I can think of.

|

|



--
João Azevedo Patrício
Tel.: +31 91 400 53 63
Portugal
@ http://tripaforra.bl.ee

Take 2 seconds to think before you act

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[R] QR code?

2014-07-18 Thread Spencer Graves

  Is there an R function to convert text to a QR Code?


  My search attempts yielded QR decompositions ;-)


  Thanks,
  Spencer

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Re: [R] Vector of Numbers Not Output to Screen

2014-07-18 Thread Rolf Turner

On 18/07/14 15:00, Dario Strbenac wrote:

The example in the question was not inside a user function.


Don't be silly.

cheers,

Rolf Turner

--
Rolf Turner
Technical Editor ANZJS

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Re: [R] Reading SDMX Files in R

2014-07-18 Thread Emmanuel Blondel
Dear Lorenzo,

I've just seen one post from you asking for hints to read SDMX data in R.
I don't know if you still need to read SDMX datasets in R. In case, you 
can use the rsdmx package hosted here https://github.com/opensdmx/rsdmx
With the OECD sample you mention, you can do as follows:

#install devtools (required to install rsdmx from github)|||
|require(devtools) |

#install  load rsdmx
install_github(rsdmx, opensdmx)|
require(rsdmx)

#read data
sdmx - 
readSDMX(http://stats.oecd.org/restsdmx/sdmx.ashx/GetData/MSTI_PUB/G_XGDP.AUS+AUT+BEL+CAN+CHL+CZE+DNK+EST+FIN+FRA+DEU+GRC+HUN+ISL+IRL+ISR+ITA+JPN+KOR+LUX+MEX+NLD+NZL+NOR+POL+PRT+SVK+SVN+ESP+SWE+CHE+TUR+GBR+USA+OECD+EU28+EU15+NMEC+ARG+CHN+ROU+RUS+SGP+ZAF+TWN/OECD?startTime=2000endTime=2014;)
df - as.data.frame(sdmx)


You can look at the wiki that gives some more information 
https://github.com/opensdmx/rsdmx/wiki

Hope this helps,
Emmanuel
http://fr.linkedin.com/in/emmanuelblondel1


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[R] modifications for ONLY local repository?

2014-07-18 Thread Zadeh, Jenny Drnevich
Hello,

We are in the midst of changing our SOP for R on our local cluster. Network 
access is only available from the head node but we don't want users downloading 
and compiling packages on the head node. Previously, we asked that all package 
installations  updates be done by the admins on request but this is 
unsustainable. We've decided to internally mirror both CRAN and Bioconductor 
and keep a core of the most used packages on R_HOME/library and update those 
weekly. Users can also download/install/update other packages from 
CRAN/Bioconductor using their own local library. What we are trying to work out 
now are the system settings needed so that install.packages (and eventually 
biocLite) automatically point to only our internal mirrors without having 
specify them in the repos argument. After much googling, I think I've figured 
out that we need to set up a ~R/etc/Rprofile.site file to change the default 
CRAN repository to our local site using options(repos = c(CRAN = file:home!
 /mirrors/no_backup/cran). Is this all that is needed or do we also need to 
modify ~R/etc/repositories, changing the URL locations to our local ones and 
commenting out the other repositories? Anything else we need to do to get 
install.packages(ape) to work seamlessly for the end user? We want to make it 
so that only users who really know what they are doing can get around 
installing from the local mirrors, even if they are accidentally running on the 
head node.

Thanks for any help or suggestions,
Jenny

Jenny Drnevich, Ph.D.

Functional Genomics Bioinformatics Specialist
High Performance Biological Computing Program
and The Roy J. Carver Biotechnology Center
University of Illinois, Urbana-Champaign
NOTE NEW OFFICE LOCATION
2112 IGB
1206 W. Gregory Dr.
Urbana, IL 61801
USA
ph: 217-300-6543
fax: 217-265-5066
e-mail: drnev...@illinois.edumailto:drnev...@illinois.edu


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[R] help with script to get starting date of blooms

2014-07-18 Thread Veronica Andreo
Hi list

I have a vector, which are remotely sensed chlorophyll values for a certain
pixel in 11 years, then i have a flag or label vector (t_max) that consists
of 0 and 1, which tells me where i have the annual peak (one per year, then
eleven 1 and all the rest are 0).

I'm interested in extracting the date in which the bloom beggins. For that
matter I'm using a threshold of 5% above the median of the whole series.

I need to go over the chlorophyll data vector (cla) and every time I find
the yearly maximum value (where t_max == 1), i need to go backwards in cla
as many time steps as needed untill I cross the threshold (5% over the
median of cl)... once i crossed that threshold, i need to be sure that at
least for 2 time steps, the value of cla keeps going down (it's below the
threshold)... once that condition is met, i want to get the first position
where cla is higher than that threshold...
that would be the phytoplankton bloom starting date...

This is more or less what i was trying, but it does not work and i'm
stuck... can you please help me??

cla- ts of 506 values (every 46 values, i have one year)
t_max- vector of 0  1; 1 where the yearly cla max occurs (11 ones  all
rest 0)
threshold = 0.05*median(cla)+median(cla)

for ( t in 1:length(t_max) ) {
  if ( t_max[t] == 0 )
  {
next;
  } else {
if ( (cla[t-1]  threshold)  (cla[t-2)]  threshold) )
{
return which(cla[t])
}
  }
}

Thanks a lot in advance!! :)

Vero

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[R] Problem with residualPlots with type rstudent

2014-07-18 Thread Muhammad Dogar
I am trying to apply the following command in R Studio but it is giving me
error. Can you please leet me know why it is not working with R Studio?


residualPlots(our.lm, type=rstudent)

Error in match.arg(type) :
  'arg' should be one of “working”, “response”, “deviance”, 
“pearson”,
“partial”


Thanks,

Dogar

-- 

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and provide commented, minimal, self-contained, reproducible code.


[R] String comparison, trailing blanks make a difference.

2014-07-18 Thread John McKown
Well, this was a shock to me. And I don't really see any documentation
about it, but perhaps I just can't see it.

abc == abc 
[1] FALSE

I guess that I thought of strings in R like I do is some other
languages where the shorter value is padded with blanks to the length
of the longer value, then compared. I.e. that trailing blanks didn't
matter.

The best solution that I have found is to use the str_trim() function
from the stringr to remove all the trailing blanks after I get the
data from the SQL data base. I cannot change the SQL schema to make
the column a varchar instead of a char column. It is a vendor DB. And
I don't know an ANSI SQL standard way to remove trailing blanks in the
SELECT command. PostgreSQL has a trim(trailing ' ' from column)', but
MS-SQL upchucks on that syntax.

-- 
There is nothing more pleasant than traveling and meeting new people!
Genghis Khan

Maranatha! 
John McKown

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] String comparison, trailing blanks make a difference.

2014-07-18 Thread William Dunlap
abc == abc 
 [1] FALSE

R does no interpretation of strings when doing comparisons so you do
have do your own canonicalization.  That may involve removing
trailing, leading, or all white space or punctuation, converting to
lower or upper case, mapping nicknames to official names, trimming to
a fixed number of characters, etc.

Bill Dunlap
TIBCO Software
wdunlap tibco.com


On Fri, Jul 18, 2014 at 9:17 AM, John McKown
john.archie.mck...@gmail.com wrote:
 Well, this was a shock to me. And I don't really see any documentation
 about it, but perhaps I just can't see it.

abc == abc 
 [1] FALSE

 I guess that I thought of strings in R like I do is some other
 languages where the shorter value is padded with blanks to the length
 of the longer value, then compared. I.e. that trailing blanks didn't
 matter.

 The best solution that I have found is to use the str_trim() function
 from the stringr to remove all the trailing blanks after I get the
 data from the SQL data base. I cannot change the SQL schema to make
 the column a varchar instead of a char column. It is a vendor DB. And
 I don't know an ANSI SQL standard way to remove trailing blanks in the
 SELECT command. PostgreSQL has a trim(trailing ' ' from column)', but
 MS-SQL upchucks on that syntax.

 --
 There is nothing more pleasant than traveling and meeting new people!
 Genghis Khan

 Maranatha! 
 John McKown

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 R-help@r-project.org mailing list
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 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] String comparison, trailing blanks make a difference.

2014-07-18 Thread Hervé Pagès

Hi John,

On 07/18/2014 09:17 AM, John McKown wrote:

Well, this was a shock to me. And I don't really see any documentation
about it, but perhaps I just can't see it.


abc == abc

[1] FALSE

I guess that I thought of strings in R like I do is some other
languages where the shorter value is padded with blanks to the length
of the longer value, then compared. I.e. that trailing blanks didn't
matter.


The shock to me is to learn that some programming languages consider
strings abc and abc  to be the same. Please name them so I can stay
away from them ;-)

Thanks,
H.



The best solution that I have found is to use the str_trim() function
from the stringr to remove all the trailing blanks after I get the
data from the SQL data base. I cannot change the SQL schema to make
the column a varchar instead of a char column. It is a vendor DB. And
I don't know an ANSI SQL standard way to remove trailing blanks in the
SELECT command. PostgreSQL has a trim(trailing ' ' from column)', but
MS-SQL upchucks on that syntax.



--
Hervé Pagès

Program in Computational Biology
Division of Public Health Sciences
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N, M1-B514
P.O. Box 19024
Seattle, WA 98109-1024

E-mail: hpa...@fhcrc.org
Phone:  (206) 667-5791
Fax:(206) 667-1319

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] understanding the parameters of 'spca' function of 'elasticnet' package

2014-07-18 Thread Adib Shafi
Hi all,

i am trying to use the 'spca' function of 'elasticnet' package. But i am
confused with the parameter 'para'.

Basically the parameter 'para' depends on the parameter 'sparse'. If
sparse=penalty, para is a vector of 1-norm penalty parameters. If
sparse=varnum,  para defines the number of sparse loadings to be obtained.

As my understanding, if i use sparse=penalty i have to set the amount
of variance for each component in a vector. But how could i know the
amount of variance in this case?

If i use sparse='varnum', i have to set the number of features i want to
extract from each component in a vector. But i dont have these numbers
even because i dont know how many key features are present in each
component.

Thanks

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] Problem in installing package ggplot2

2014-07-18 Thread 오건희
Hi..

After  I upgraded R from 3.1 to 3.11, I stuck with problem in installing
'ggplot2' package

The error message was;

Error in loadNamespace(j - i[[1L]], c(lib.loc, .libPaths()), versionCheck
= vI[[j]]) :
  there is no package called ‘Rcpp’
Error: package or namespace load failed for ‘ggplot2’


I tried to find out resolution on the web.. and most people recommend
following;


install.packages(ggplot2,dependencies=T)

However, it didn't work, either.. it's so confusing.

I should use this package ASAP.. so, hope you guys give me a clear answer.

Best for your effort,

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Problem in installing package ggplot2

2014-07-18 Thread William Dunlap
 install.packages(ggplot2,dependencies=T)
 However, it didn't work, either.. it's so confusing.

What does R print when you type the 2 lines
   install.packages(ggplot2, dependencies=TRUE)
   libraray(ggplot2)
?  (didn't work covers a lot of ground - seeing the entire
printed output may tell others what is going on.)

Bill Dunlap
TIBCO Software
wdunlap tibco.com


On Fri, Jul 18, 2014 at 10:12 AM, 오건희 gunfif...@gmail.com wrote:
 Hi..

 After  I upgraded R from 3.1 to 3.11, I stuck with problem in installing
 'ggplot2' package

 The error message was;

 Error in loadNamespace(j - i[[1L]], c(lib.loc, .libPaths()), versionCheck
 = vI[[j]]) :
   there is no package called ‘Rcpp’
 Error: package or namespace load failed for ‘ggplot2’


 I tried to find out resolution on the web.. and most people recommend
 following;


 install.packages(ggplot2,dependencies=T)

 However, it didn't work, either.. it's so confusing.

 I should use this package ASAP.. so, hope you guys give me a clear answer.

 Best for your effort,

 [[alternative HTML version deleted]]


 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.


__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Problem in installing package ggplot2

2014-07-18 Thread Jeff Newmiller
The obvious workaround (to me) is to go back and use 3.1 until you figure out 
how to setup 3.1.1.

Re the latter... you have omitted some key information that strongly suggests 
that you have not read the Posting Guide. You might find reading [1] helpful as 
well.

[1] 
http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example
---
Jeff NewmillerThe .   .  Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
  Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
/Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
--- 
Sent from my phone. Please excuse my brevity.

On July 18, 2014 10:12:19 AM PDT, 오건희 gunfif...@gmail.com wrote:
Hi..

After  I upgraded R from 3.1 to 3.11, I stuck with problem in
installing
'ggplot2' package

The error message was;

Error in loadNamespace(j - i[[1L]], c(lib.loc, .libPaths()),
versionCheck
= vI[[j]]) :
  there is no package called ���Rcpp���
Error: package or namespace load failed for ���ggplot2���


I tried to find out resolution on the web.. and most people recommend
following;


install.packages(ggplot2,dependencies=T)

However, it didn't work, either.. it's so confusing.

I should use this package ASAP.. so, hope you guys give me a clear
answer.

Best for your effort,

   [[alternative HTML version deleted]]





__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Ahmed Attia
Dear R users,

I would appreciate your help in plotting the means with simultaneous
horizontal and vertical error bars. I use the lineplot.CI but it creates
the vertical bars only.


The attached file has the dataset that I want to graph. The (X) is the
x-axis values and (y Lint) is the response in y-axis. Therefore, values in
the x-axis would be 150, 350, 550, .etc.

At each value of the x-axis would be the average response point (y Lint)
with vertical and horizontal error bars.

Each value of the x-axis (X) represents a range of values that in x Water.
The x Water column should be used to draw the horizontal lines.

Thank you so much.

AA




Ahmed M. Attia


Research Assistant
Dept. of SoilCrop Sciences
Texas AM University
ahmed.at...@ag.tamu.edu
Cell phone: 001-979-248-5215
FAX: 001-308-455-4024
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Sarah Goslee
You could try plotCI from the plotrix package.

Note that most attachments are stripped; dput() is the preferred way
to include data.

Sarah

On Fri, Jul 18, 2014 at 4:41 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Dear R users,

 I would appreciate your help in plotting the means with simultaneous
 horizontal and vertical error bars. I use the lineplot.CI but it creates
 the vertical bars only.


 The attached file has the dataset that I want to graph. The (X) is the
 x-axis values and (y Lint) is the response in y-axis. Therefore, values in
 the x-axis would be 150, 350, 550, .etc.

 At each value of the x-axis would be the average response point (y Lint)
 with vertical and horizontal error bars.

 Each value of the x-axis (X) represents a range of values that in x Water.
 The x Water column should be used to draw the horizontal lines.

 Thank you so much.

 AA




-- 
Sarah Goslee
http://www.functionaldiversity.org

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] setting axis limits and breaks in ggplot2

2014-07-18 Thread Dimitri Liakhovitski
Hello!

I want my y axis in this plot to range from 0 to 1 and use as break points
0, 0.1, 0.2 up to 1.
Why is my code below not working?

Thank you!

  library(ggplot2)
  test-data.frame(a=1:4,b=c(0.12,0.5,0.6,0.4))

  ggplot(test, aes(x=a, y=b))+geom_line()+
scale_x_continuous(breaks=1:4)+
scale_y_continuous(breaks=seq(0,1,by=0.1))

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] setting axis limits and breaks in ggplot2

2014-07-18 Thread Sarah Goslee
You need to explicitly specify the limits; see

http://docs.ggplot2.org/current/scale_continuous.html


  library(ggplot2)
  test-data.frame(a=1:4,b=c(0.12,0.5,0.6,0.4))

  ggplot(test, aes(x=a, y=b))+geom_line()+
scale_x_continuous(breaks=1:4)+
scale_y_continuous(breaks=seq(0,1,by=0.1), limits=c(0,1))



Sarah

On Fri, Jul 18, 2014 at 5:04 PM, Dimitri Liakhovitski
dimitri.liakhovit...@gmail.com wrote:
 Hello!

 I want my y axis in this plot to range from 0 to 1 and use as break points
 0, 0.1, 0.2 up to 1.
 Why is my code below not working?

 Thank you!

   library(ggplot2)
   test-data.frame(a=1:4,b=c(0.12,0.5,0.6,0.4))

   ggplot(test, aes(x=a, y=b))+geom_line()+
 scale_x_continuous(breaks=1:4)+
 scale_y_continuous(breaks=seq(0,1,by=0.1))


-- 
Sarah Goslee
http://www.functionaldiversity.org

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] setting axis limits and breaks in ggplot2

2014-07-18 Thread Dimitri Liakhovitski
Thank you very much, Sarah!


On Fri, Jul 18, 2014 at 5:18 PM, Sarah Goslee sarah.gos...@gmail.com
wrote:

 You need to explicitly specify the limits; see

 http://docs.ggplot2.org/current/scale_continuous.html


   library(ggplot2)
   test-data.frame(a=1:4,b=c(0.12,0.5,0.6,0.4))

   ggplot(test, aes(x=a, y=b))+geom_line()+
 scale_x_continuous(breaks=1:4)+
 scale_y_continuous(breaks=seq(0,1,by=0.1), limits=c(0,1))



 Sarah

 On Fri, Jul 18, 2014 at 5:04 PM, Dimitri Liakhovitski
 dimitri.liakhovit...@gmail.com wrote:
  Hello!
 
  I want my y axis in this plot to range from 0 to 1 and use as break
 points
  0, 0.1, 0.2 up to 1.
  Why is my code below not working?
 
  Thank you!
 
library(ggplot2)
test-data.frame(a=1:4,b=c(0.12,0.5,0.6,0.4))
 
ggplot(test, aes(x=a, y=b))+geom_line()+
  scale_x_continuous(breaks=1:4)+
  scale_y_continuous(breaks=seq(0,1,by=0.1))
 

 --
 Sarah Goslee
 http://www.functionaldiversity.org




-- 
Dimitri Liakhovitski

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Sarah Goslee
Did you read the help?

 err: The direction of error bars: x for horizontal, y for
  vertical (xy would be nice but is not implemented yet;
  don't know quite how everything would be specified.  See
  examples for composing a plot with simultaneous horizontal
  and vertical error bars)

Sarah

On Fri, Jul 18, 2014 at 5:22 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Sarah,

 PlotCI provides the vertical CI bars only. Do you have any idea?

 plotCI(x=means, uiw=ciw)

   # prettier
   plotCI(x=means, uiw=ciw, col=black, barcol=blue, lwd=1)


 AA

 Ahmed M. Attia


 Research Assistant
 Dept. of SoilCrop Sciences
 Texas AM University
 ahmed.at...@ag.tamu.edu
 Cell phone: 001-979-248-5215
 FAX: 001-308-455-4024



 On Fri, Jul 18, 2014 at 4:00 PM, Sarah Goslee sarah.gos...@gmail.com wrote:
 You could try plotCI from the plotrix package.

 Note that most attachments are stripped; dput() is the preferred way
 to include data.

 Sarah

 On Fri, Jul 18, 2014 at 4:41 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Dear R users,

 I would appreciate your help in plotting the means with simultaneous
 horizontal and vertical error bars. I use the lineplot.CI but it creates
 the vertical bars only.


 The attached file has the dataset that I want to graph. The (X) is the
 x-axis values and (y Lint) is the response in y-axis. Therefore, values in
 the x-axis would be 150, 350, 550, .etc.

 At each value of the x-axis would be the average response point (y Lint)
 with vertical and horizontal error bars.

 Each value of the x-axis (X) represents a range of values that in x Water.
 The x Water column should be used to draw the horizontal lines.

 Thank you so much.

 AA




 --
 Sarah Goslee
 http://www.functionaldiversity.org

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Sarah Goslee
On Fri, Jul 18, 2014 at 5:38 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Yes, I saw this but I can't translate it to a code.

 http://svitsrv25.epfl.ch/R-doc/library/Hmisc/html/errbar.html

Why are you reading the help for Hmisc::errbar when I suggested (and
copied and pasted for you!) the function plotCI from the plotrix
package?

The examples in ?plotCI demonstrate having horizontal and vertical
error bars, as cited in the bit I copied and pasted for you.

Please also reply all so your message returns to the R-help list, and
not just to me, so others can participate and benefit.

Sarah


 I looked at this but it produces the vertical bars only.

 AA

 Ahmed M. Attia


 Research Assistant
 Dept. of SoilCrop Sciences
 Texas AM University
 ahmed.at...@ag.tamu.edu
 Cell phone: 001-979-248-5215
 FAX: 001-308-455-4024



 On Fri, Jul 18, 2014 at 4:29 PM, Sarah Goslee sarah.gos...@gmail.com wrote:
 Did you read the help?

  err: The direction of error bars: x for horizontal, y for
   vertical (xy would be nice but is not implemented yet;
   don't know quite how everything would be specified.  See
   examples for composing a plot with simultaneous horizontal
   and vertical error bars)

 Sarah

 On Fri, Jul 18, 2014 at 5:22 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Sarah,

 PlotCI provides the vertical CI bars only. Do you have any idea?

 plotCI(x=means, uiw=ciw)

   # prettier
   plotCI(x=means, uiw=ciw, col=black, barcol=blue, lwd=1)


 AA

 Ahmed M. Attia


 Research Assistant
 Dept. of SoilCrop Sciences
 Texas AM University
 ahmed.at...@ag.tamu.edu
 Cell phone: 001-979-248-5215
 FAX: 001-308-455-4024



 On Fri, Jul 18, 2014 at 4:00 PM, Sarah Goslee sarah.gos...@gmail.com 
 wrote:
 You could try plotCI from the plotrix package.

 Note that most attachments are stripped; dput() is the preferred way
 to include data.

 Sarah

 On Fri, Jul 18, 2014 at 4:41 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Dear R users,

 I would appreciate your help in plotting the means with simultaneous
 horizontal and vertical error bars. I use the lineplot.CI but it creates
 the vertical bars only.


 The attached file has the dataset that I want to graph. The (X) is the
 x-axis values and (y Lint) is the response in y-axis. Therefore, values in
 the x-axis would be 150, 350, 550, .etc.

 At each value of the x-axis would be the average response point (y Lint)
 with vertical and horizontal error bars.

 Each value of the x-axis (X) represents a range of values that in x Water.
 The x Water column should be used to draw the horizontal lines.

 Thank you so much.

 AA




 --
 Sarah Goslee
 http://www.functionaldiversity.org

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Ahmed Attia
Hi all,

I have been also trying the plotCI but it did not work out

plotCI(x, y = NULL, uiw, liw = uiw, ui, li, err='y', ylim=NULL,
   xlim=NULL, type=p,  col=par(col), barcol=col,
   pt.bg = par(bg),  sfrac = 0.01, gap=1, lwd=par(lwd),
   lty=par(lty), labels=FALSE, add=FALSE, xlab, ylab,  minbar,
   maxbar, ... )


I searched and looked at the previous plotCI posts below;



http://www.talkstats.com/showthread.php/51908-Vertical-and-horizontal-error-bars-PlotCI-errbar


Dear R users,

I would appreciate your help in plotting the means with simultaneous
horizontal and vertical error bars. I use the lineplot.CI but it creates
the vertical bars only.


The attached file has the dataset that I want to graph. The (X) is the
x-axis values and (y Lint) is the response in y-axis. Therefore, values in
the x-axis would be 150, 350, 550, .etc.

At each value of the x-axis would be the average response point (y Lint)
with vertical and horizontal error bars.

Each value of the x-axis (X) represents a range of values that in x Water.
The x Water column should be used to draw the horizontal lines.

Thank you so much.

AA




Ahmed M. Attia


Research Assistant
Dept. of SoilCrop Sciences
Texas AM University
ahmed.at...@ag.tamu.edu
Cell phone: 001-979-248-5215
FAX: 001-308-455-4024
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Sarah Goslee
The example given in ?plotCI works just fine for me. You'll need to be
more specific about what isn't working, and ideally provide some data
with dput().
Notice the add=TRUE argument in the second call to plotCI().


  y-runif(10)
  err.x-runif(10)
  err.y-runif(10)
  plotCI(1:10,y,err.y,pt.bg=par(bg),pch=21,xlim=c(0,11),
main=plotCI with extra space on the x axis)
  plotCI(1:10,y,err.x,pt.bg=par(bg),pch=21,err=x,add=TRUE)

Sarah

On Fri, Jul 18, 2014 at 6:06 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Hi all,

 I have been also trying the plotCI but it did not work out

 plotCI(x, y = NULL, uiw, liw = uiw, ui, li, err='y', ylim=NULL,
xlim=NULL, type=p,  col=par(col), barcol=col,
pt.bg = par(bg),  sfrac = 0.01, gap=1, lwd=par(lwd),
lty=par(lty), labels=FALSE, add=FALSE, xlab, ylab,  minbar,
maxbar, ... )


 I searched and looked at the previous plotCI posts below;



 http://www.talkstats.com/showthread.php/51908-Vertical-and-horizontal-error-bars-PlotCI-errbar


 Dear R users,

 I would appreciate your help in plotting the means with simultaneous
 horizontal and vertical error bars. I use the lineplot.CI but it creates
 the vertical bars only.


 The attached file has the dataset that I want to graph. The (X) is the
 x-axis values and (y Lint) is the response in y-axis. Therefore, values in
 the x-axis would be 150, 350, 550, .etc.

 At each value of the x-axis would be the average response point (y Lint)
 with vertical and horizontal error bars.

 Each value of the x-axis (X) represents a range of values that in x Water.
 The x Water column should be used to draw the horizontal lines.

 Thank you so much.

 AA




 Ahmed M. Attia



__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread William Dunlap
Is the original poster having trouble translating the synopsis at the
top of the help file to actual code?  He should look at the examples
at the bottom of the help file, or better, run them with
   example(plotCI)
and see if any of the plots looks close to what he wants.



Bill Dunlap
TIBCO Software
wdunlap tibco.com


On Fri, Jul 18, 2014 at 3:15 PM, Sarah Goslee sarah.gos...@gmail.com wrote:
 The example given in ?plotCI works just fine for me. You'll need to be
 more specific about what isn't working, and ideally provide some data
 with dput().
 Notice the add=TRUE argument in the second call to plotCI().


   y-runif(10)
   err.x-runif(10)
   err.y-runif(10)
   plotCI(1:10,y,err.y,pt.bg=par(bg),pch=21,xlim=c(0,11),
 main=plotCI with extra space on the x axis)
   plotCI(1:10,y,err.x,pt.bg=par(bg),pch=21,err=x,add=TRUE)

 Sarah

 On Fri, Jul 18, 2014 at 6:06 PM, Ahmed Attia ahmedati...@gmail.com wrote:
 Hi all,

 I have been also trying the plotCI but it did not work out

 plotCI(x, y = NULL, uiw, liw = uiw, ui, li, err='y', ylim=NULL,
xlim=NULL, type=p,  col=par(col), barcol=col,
pt.bg = par(bg),  sfrac = 0.01, gap=1, lwd=par(lwd),
lty=par(lty), labels=FALSE, add=FALSE, xlab, ylab,  minbar,
maxbar, ... )


 I searched and looked at the previous plotCI posts below;



 http://www.talkstats.com/showthread.php/51908-Vertical-and-horizontal-error-bars-PlotCI-errbar


 Dear R users,

 I would appreciate your help in plotting the means with simultaneous
 horizontal and vertical error bars. I use the lineplot.CI but it creates
 the vertical bars only.


 The attached file has the dataset that I want to graph. The (X) is the
 x-axis values and (y Lint) is the response in y-axis. Therefore, values in
 the x-axis would be 150, 350, 550, .etc.

 At each value of the x-axis would be the average response point (y Lint)
 with vertical and horizontal error bars.

 Each value of the x-axis (X) represents a range of values that in x Water.
 The x Water column should be used to draw the horizontal lines.

 Thank you so much.

 AA




 Ahmed M. Attia



 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] Weird but interesting behavior of ggplot2 in a loop

2014-07-18 Thread Dimitri Liakhovitski
Hello and sorry I am not providing an example. However, I hope you'll be
able to answer my question.

I have a for loop. Inside this loop I build 4 plots using ggplot2. See 2
blocks of code below - I have in total 4 of those:
As I step through the loop manually and run all the code inside the loop,
everything works perfectly and R generates (among other things) 4 .png
files in my working directory (each size 7 KB).

However, when I run the loop (even when the loop length is 1) the generated
.png files are empty (and size 1 KB). I've never seen anything like this.
My loop is correct - because everything else generated in the loop except
for the images is there. And the image files with right names are also
there, they are just empty.

Any ideas why this might be happening? I did it first in RStudio and then
just in R Gui.
Thank you very much!



  png(forname1,width=700,height=450)
  ggplot(result.opt, aes(x=prices, y=demand))+
geom_line(colour='darkblue',size=1.2)+

scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
xlab(Price) + ylab(Purchase Intent)+
labs(title=forname2)+
theme(plot.title = element_text(size=16))+
theme(axis.title.x=element_text(size=12))+
theme(axis.title.y=element_text(size=12))
  dev.off()

  png(forname2,width=700,height=450)
  ggplot(result.opt, aes(x=prices, y=revenue))+
geom_line(colour='blue',size=1.2)+

scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
# scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
xlab(Price) + ylab(Revenue per Person)+
labs(title=forname2)+
theme(plot.title = element_text(size=16))+
theme(axis.title.x=element_text(size=12))+
theme(axis.title.y=element_text(size=12))
  dev.off()


-- 
Dimitri Liakhovitski

[[alternative HTML version deleted]]

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and provide commented, minimal, self-contained, reproducible code.


Re: [R] Weird but interesting behavior of ggplot2 in a loop

2014-07-18 Thread Sarah Goslee
Inside a loop or other function you need an explicit print statement.

http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-do-lattice_002ftrellis-graphics-not-work_003f

Sarah

On Friday, July 18, 2014, Dimitri Liakhovitski 
dimitri.liakhovit...@gmail.com wrote:

 Hello and sorry I am not providing an example. However, I hope you'll be
 able to answer my question.

 I have a for loop. Inside this loop I build 4 plots using ggplot2. See 2
 blocks of code below - I have in total 4 of those:
 As I step through the loop manually and run all the code inside the loop,
 everything works perfectly and R generates (among other things) 4 .png
 files in my working directory (each size 7 KB).

 However, when I run the loop (even when the loop length is 1) the generated
 .png files are empty (and size 1 KB). I've never seen anything like this.
 My loop is correct - because everything else generated in the loop except
 for the images is there. And the image files with right names are also
 there, they are just empty.

 Any ideas why this might be happening? I did it first in RStudio and then
 just in R Gui.
 Thank you very much!



   png(forname1,width=700,height=450)
   ggplot(result.opt, aes(x=prices, y=demand))+
 geom_line(colour='darkblue',size=1.2)+

 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Purchase Intent)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
   dev.off()

   png(forname2,width=700,height=450)
   ggplot(result.opt, aes(x=prices, y=revenue))+
 geom_line(colour='blue',size=1.2)+

 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 # scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Revenue per Person)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
   dev.off()


 --
 Dimitri Liakhovitski

 [[alternative HTML version deleted]]

 __
 R-help@r-project.org javascript:; mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.



-- 
Sarah Goslee
http://www.stringpage.com
http://www.sarahgoslee.com
http://www.functionaldiversity.org

[[alternative HTML version deleted]]

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Weird but interesting behavior of ggplot2 in a loop

2014-07-18 Thread Dimitri Liakhovitski
Thank you, but if I give my plot a name and then print it, how can I print
it with a desired name?

  png(forname1,width=700,height=450)
  print(
  ggplot(result.opt, aes(x=prices, y=demand))+
geom_line(colour='darkblue',size=1.2)+

scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
xlab(Price) + ylab(Purchase Intent)+
labs(title=forname2)+
theme(plot.title = element_text(size=16))+
theme(axis.title.x=element_text(size=12))+
theme(axis.title.y=element_text(size=12))
)
  dev.off()


On Fri, Jul 18, 2014 at 6:53 PM, Sarah Goslee sarah.gos...@gmail.com
wrote:

 Inside a loop or other function you need an explicit print statement.


 http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-do-lattice_002ftrellis-graphics-not-work_003f

 Sarah


 On Friday, July 18, 2014, Dimitri Liakhovitski 
 dimitri.liakhovit...@gmail.com wrote:

 Hello and sorry I am not providing an example. However, I hope you'll be
 able to answer my question.

 I have a for loop. Inside this loop I build 4 plots using ggplot2. See 2
 blocks of code below - I have in total 4 of those:
 As I step through the loop manually and run all the code inside the loop,
 everything works perfectly and R generates (among other things) 4 .png
 files in my working directory (each size 7 KB).

 However, when I run the loop (even when the loop length is 1) the
 generated
 .png files are empty (and size 1 KB). I've never seen anything like this.
 My loop is correct - because everything else generated in the loop except
 for the images is there. And the image files with right names are also
 there, they are just empty.

 Any ideas why this might be happening? I did it first in RStudio and then
 just in R Gui.
 Thank you very much!



   png(forname1,width=700,height=450)
   ggplot(result.opt, aes(x=prices, y=demand))+
 geom_line(colour='darkblue',size=1.2)+

 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Purchase Intent)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
   dev.off()

   png(forname2,width=700,height=450)
   ggplot(result.opt, aes(x=prices, y=revenue))+
 geom_line(colour='blue',size=1.2)+

 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 # scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Revenue per Person)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
   dev.off()


 --
 Dimitri Liakhovitski

 [[alternative HTML version deleted]]

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.



 --
 Sarah Goslee
 http://www.stringpage.com
 http://www.sarahgoslee.com
 http://www.functionaldiversity.org




-- 
Dimitri Liakhovitski

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Weird but interesting behavior of ggplot2 in a loop

2014-07-18 Thread Dimitri Liakhovitski
I meant - the code I just sent doesn't give the file being printed a name...


On Fri, Jul 18, 2014 at 7:05 PM, Dimitri Liakhovitski 
dimitri.liakhovit...@gmail.com wrote:

 Thank you, but if I give my plot a name and then print it, how can I print
 it with a desired name?

   png(forname1,width=700,height=450)
   print(
   ggplot(result.opt, aes(x=prices, y=demand))+
 geom_line(colour='darkblue',size=1.2)+

 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Purchase Intent)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
 )
   dev.off()


 On Fri, Jul 18, 2014 at 6:53 PM, Sarah Goslee sarah.gos...@gmail.com
 wrote:

 Inside a loop or other function you need an explicit print statement.


 http://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-do-lattice_002ftrellis-graphics-not-work_003f

 Sarah


 On Friday, July 18, 2014, Dimitri Liakhovitski 
 dimitri.liakhovit...@gmail.com wrote:

 Hello and sorry I am not providing an example. However, I hope you'll be
 able to answer my question.

 I have a for loop. Inside this loop I build 4 plots using ggplot2. See
 2
 blocks of code below - I have in total 4 of those:
 As I step through the loop manually and run all the code inside the loop,
 everything works perfectly and R generates (among other things) 4 .png
 files in my working directory (each size 7 KB).

 However, when I run the loop (even when the loop length is 1) the
 generated
 .png files are empty (and size 1 KB). I've never seen anything like this.
 My loop is correct - because everything else generated in the loop except
 for the images is there. And the image files with right names are also
 there, they are just empty.

 Any ideas why this might be happening? I did it first in RStudio and then
 just in R Gui.
 Thank you very much!



   png(forname1,width=700,height=450)
   ggplot(result.opt, aes(x=prices, y=demand))+
 geom_line(colour='darkblue',size=1.2)+


 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Purchase Intent)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
   dev.off()

   png(forname2,width=700,height=450)
   ggplot(result.opt, aes(x=prices, y=revenue))+
 geom_line(colour='blue',size=1.2)+


 scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
 # scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
 xlab(Price) + ylab(Revenue per Person)+
 labs(title=forname2)+
 theme(plot.title = element_text(size=16))+
 theme(axis.title.x=element_text(size=12))+
 theme(axis.title.y=element_text(size=12))
   dev.off()


 --
 Dimitri Liakhovitski

 [[alternative HTML version deleted]]

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.



 --
 Sarah Goslee
 http://www.stringpage.com
 http://www.sarahgoslee.com
 http://www.functionaldiversity.org




 --
 Dimitri Liakhovitski




-- 
Dimitri Liakhovitski

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Weird but interesting behavior of ggplot2 in a loop

2014-07-18 Thread Jeff Newmiller
FAQ 7.16. ... yes, it applies.
---
Jeff NewmillerThe .   .  Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
  Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
/Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
--- 
Sent from my phone. Please excuse my brevity.

On July 18, 2014 3:42:14 PM PDT, Dimitri Liakhovitski 
dimitri.liakhovit...@gmail.com wrote:
Hello and sorry I am not providing an example. However, I hope you'll
be
able to answer my question.

I have a for loop. Inside this loop I build 4 plots using ggplot2.
See 2
blocks of code below - I have in total 4 of those:
As I step through the loop manually and run all the code inside the
loop,
everything works perfectly and R generates (among other things) 4 .png
files in my working directory (each size 7 KB).

However, when I run the loop (even when the loop length is 1) the
generated
.png files are empty (and size 1 KB). I've never seen anything like
this.
My loop is correct - because everything else generated in the loop
except
for the images is there. And the image files with right names are also
there, they are just empty.

Any ideas why this might be happening? I did it first in RStudio and
then
just in R Gui.
Thank you very much!



  png(forname1,width=700,height=450)
  ggplot(result.opt, aes(x=prices, y=demand))+
geom_line(colour='darkblue',size=1.2)+

scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
xlab(Price) + ylab(Purchase Intent)+
labs(title=forname2)+
theme(plot.title = element_text(size=16))+
theme(axis.title.x=element_text(size=12))+
theme(axis.title.y=element_text(size=12))
  dev.off()

  png(forname2,width=700,height=450)
  ggplot(result.opt, aes(x=prices, y=revenue))+
geom_line(colour='blue',size=1.2)+

scale_x_continuous(breaks=seq(input[1,1],input[nrow(input),1],by=step*6))+
# scale_y_continuous(breaks=seq(0,1,by=0.1),limits=c(0,1))+
xlab(Price) + ylab(Revenue per Person)+
labs(title=forname2)+
theme(plot.title = element_text(size=16))+
theme(axis.title.x=element_text(size=12))+
theme(axis.title.y=element_text(size=12))
  dev.off()

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Ahmed Attia
My problem is getting x and y into the PlotCI. I do not know how to use the
dput(). But below is my data;



x  x-Water y  150 74.67 75  150 92.2 97  150 138.2 327.5  150 140.2 142.6
150 194.82 333.8  150 226.31 423  150 226.56 590.9  150 240.28 546.6  150
241.55 232.3  150 243.07 454.6  350 252.7 352.8  350 257.4 459.7  350 260.09
874.2  350 260.5 272.8  350 270.25 359.8  350 272.54 1008  350 286 638.9
350 288.3 791  350 288.54 736  350 291.34 816.3  350 297.0 465  350 303.8
234.3  350 306.58 601.9  350 310.38 942.9  350 311.3 334.4  350 317.75 522.1
350 330.45 563  350 333.78 717.4  350 339.59 851.5  350 341.37 642  350
342.7 490.5  350 344.2 487.7  350 344.42 1174  350 345.4 440.7  350 345.44
243  350 349.22 834.8  350 354.48 704.9  350 363.4 885  350 365.75 606.7
350 366.77 1036.9  350 370.08 898.8  350 371.09 640.9  350 372.69 768.1  350
374.24 574.4  350 375.15 200.9  350 375.3 1217  350 376.17 836.4  350 377.7
949.8  350 377.7 986.9  350 382.74 458.6  350 384 456.4  350 384.3 1189  350
385.9 978.2  350 388.44 379.7  350 391.66 865.7  350 392.44 1026.8  350
394.3 663.7  350 398.74 533.1  350 399.72 551.6  350 402.33 341.3  350 410.4
889  350 413 1530  350 419.35 1109.8  350 421.19 802.1  350 422.4 896.8  350
422.65 995.6  350 428.49 1337  350 433.72 1304.6  350 439.2 1190.4  350
439.42 914.3  350 440.43 1016.9  350 443 1266.1  350 446.4 659.3  350 448.05
369.3  550 455.34 1206.2  550 456.44 1139.9  550 458.45 1541.1  550 461.52
1048.4  550 461.77 486  550 462.45 910.6  550 467.49 1257  550 470.15 880.1
550 471.2 1155.7  550 471.32 1275  550 475.22 570.4  550 475.48 1226.6  550
481.58 1520  550 484.52 1549.6  550 488.29 1298  550 488.73 887.1  550
490.98 1261  550 491.08 1519.5  550 492.76 1082.6  550 499.38 1339.3  550
501.31 1121.3  550 503.42 1216.8  550 503.87 723.6  550 505.71 1488.6  550
506.74 1613.1  550 510.77 1460.9  550 514.09 1207.1  550 518.72 1167.771
550 519.93 1485.1  550 523.09 1025.8  550 526.79 986.5  550 530.34 874.5
550 532.89 1408.8  550 534.16 1197.7  550 538.1 1235.1  550 542.06 1219.7
550 545.34 1176.2  550 548.89 1366.4  550 550.668 1248  550 551.0 1434.4
550 551.84 1092.1  550 552.95 766.5  550 553.68 1465.7  550 556.76 1311.6
550 557.59 1247.3  550 558 1288.3  550 558.23 1115.257  550 567.66 1514.2
550 571.75 1249.9  550 571.82 1320  550 572.8 1397.2  550 577.89 1228  550
578 1580.1  550 578.5 1491.3  550 582.67 1304.3  550 587.75 1188.7  550
590.14 1476.8  550 592.07 1644.1  550 592.1 1334.4  550 596.9 1395.7  550
600.2 1468  550 602.76 978.3  550 604.01 1183.5  550 604.57 1051.49  550
608.98 1408.4  550 610.875 1189.9  550 616.45 1647.9  550 620.7 1193.3  550
623.58 1804  550 626.6 1575.8  550 629.16 1187.8  550 635.25 1468.2  550
638.34 1276  550 640.32 982.4  550 641 1241.3  550 647.5 1452.4  550 649.24
1826.5  750 653.56 1613.7  750 660.36 1731  750 665.22 1271.6  750 665.92
1172.369  750 669.03 1403.9  750 669.03 1261  750 669.94 1582.7  750 671.6
1296.4  750 673.35 1280.7  750 675.85 1306.8  750 678.43 1697.6  750 679.42
1435.1  750 679.48 1315.4  750 682.49 930.7  750 684.68 1612.1  750 685.29
1328.3  750 702.74 .3  750 704.58 980.6  750 712.97 1766.4  750 713.996
1163.7  750 714.4 1458  750 715.14 1238  750 717.14 1553.6  750 718.82
1653.9  750 720.55 1343.4  750 729.06 1053.063  750 730.754 1132  750 742.0
1293.2  750 755.87 1564.7  750 757.42 1211.7  750 764.03 1420.6  750 765.25
1449.4  750 766.08 1839  750 768.09 1579.1  750 769 1546.7  750 772.17
1779.6  750 772.41 1193.6  750 777.2 1880.7  750 783.62 1558.8  750 785.9
1259.4  750 788.64 1363.6  750 790.09 1398.4  750 793.22 1157.607  750
805.67 1135  750 808.99 1617.3  750 812.03 1246.4  750 820.672 1362  750
831.4 1586  750 842.51 1362.5  750 852.18 1597  950 852.18 1597  950 861.03
1554.4  950 865.26 1358.2  950 870.926 1713  950 872.74 1191.2  950 878.83
1544.1  950 895.62 1651.7  950 896.59 1233.2  950 901.22 1209.8  950 935.58
1278.7  950 944.11 1215.1  950 966.12 1334.8  950 991.9 1336.9  950 1025.16
1542.5  1150 1086.35 1382  1150 1142.5 1447.2  1150 1203.15 1262.4
x is the x-axis and y is the y-axis. x-Water should be used to produce the
horizontal error bars. How I can tell the program to do that.

Thanks

AA


Ahmed M. Attia


Research Assistant
Dept. of SoilCrop Sciences
Texas AM University
ahmed.at...@ag.tamu.edu
Cell phone: 001-979-248-5215
FAX: 001-308-455-4024



On Fri, Jul 18, 2014 at 3:30 PM, William Dunlap wdun...@tibco.com wrote:

 Is the original poster having trouble translating the synopsis at the
 top of the help file to actual code?  He should look at the examples
 at the bottom of the help file, or better, run them with
example(plotCI)
 and see if any of the plots looks close to what he wants.



 Bill Dunlap
 TIBCO Software
 wdunlap tibco.com


 On Fri, Jul 18, 2014 at 3:15 PM, Sarah Goslee sarah.gos...@gmail.com
 wrote:
  The example given in ?plotCI works just fine for me. You'll need to be
  more specific about what isn't working, and ideally provide some data
  with 

Re: [R] Fwd: Plot the means with simultaneous horizontal and vertical error bars

2014-07-18 Thread Marc Girondot

In the package phenology (in CRAN), I add a function plot_errbar:
plot_errbar(..., errbar.x = NULL, errbar.y = NULL, errbar.x.plus = NULL,
  errbar.x.minus = NULL, errbar.y.plus = NULL, errbar.y.minus = NULL,
  x.plus = NULL, x.minus = NULL, y.plus = NULL, y.minus = NULL,
  errbar.tick = 1/50, errbar.lwd = par(lwd), errbar.lty = par(lty),
  errbar.col = par(fg), errbar.y.polygon = FALSE,
  errbar.y.polygon.list = list(NULL), add = FALSE)

It permits to plot errbar both on x and y.

Sincerely,

Marc Girondot

Le 19/07/2014 02:27, Ahmed Attia a écrit :

My problem is getting x and y into the PlotCI. I do not know how to use the
dput(). But below is my data;



x  x-Water y  150 74.67 75  150 92.2 97  150 138.2 327.5  150 140.2 142.6
150 194.82 333.8  150 226.31 423  150 226.56 590.9  150 240.28 546.6  150
241.55 232.3  150 243.07 454.6  350 252.7 352.8  350 257.4 459.7  350 260.09
874.2  350 260.5 272.8  350 270.25 359.8  350 272.54 1008  350 286 638.9
350 288.3 791  350 288.54 736  350 291.34 816.3  350 297.0 465  350 303.8
234.3  350 306.58 601.9  350 310.38 942.9  350 311.3 334.4  350 317.75 522.1
350 330.45 563  350 333.78 717.4  350 339.59 851.5  350 341.37 642  350
342.7 490.5  350 344.2 487.7  350 344.42 1174  350 345.4 440.7  350 345.44
243  350 349.22 834.8  350 354.48 704.9  350 363.4 885  350 365.75 606.7
350 366.77 1036.9  350 370.08 898.8  350 371.09 640.9  350 372.69 768.1  350
374.24 574.4  350 375.15 200.9  350 375.3 1217  350 376.17 836.4  350 377.7
949.8  350 377.7 986.9  350 382.74 458.6  350 384 456.4  350 384.3 1189  350
385.9 978.2  350 388.44 379.7  350 391.66 865.7  350 392.44 1026.8  350
394.3 663.7  350 398.74 533.1  350 399.72 551.6  350 402.33 341.3  350 410.4
889  350 413 1530  350 419.35 1109.8  350 421.19 802.1  350 422.4 896.8  350
422.65 995.6  350 428.49 1337  350 433.72 1304.6  350 439.2 1190.4  350
439.42 914.3  350 440.43 1016.9  350 443 1266.1  350 446.4 659.3  350 448.05
369.3  550 455.34 1206.2  550 456.44 1139.9  550 458.45 1541.1  550 461.52
1048.4  550 461.77 486  550 462.45 910.6  550 467.49 1257  550 470.15 880.1
550 471.2 1155.7  550 471.32 1275  550 475.22 570.4  550 475.48 1226.6  550
481.58 1520  550 484.52 1549.6  550 488.29 1298  550 488.73 887.1  550
490.98 1261  550 491.08 1519.5  550 492.76 1082.6  550 499.38 1339.3  550
501.31 1121.3  550 503.42 1216.8  550 503.87 723.6  550 505.71 1488.6  550
506.74 1613.1  550 510.77 1460.9  550 514.09 1207.1  550 518.72 1167.771
550 519.93 1485.1  550 523.09 1025.8  550 526.79 986.5  550 530.34 874.5
550 532.89 1408.8  550 534.16 1197.7  550 538.1 1235.1  550 542.06 1219.7
550 545.34 1176.2  550 548.89 1366.4  550 550.668 1248  550 551.0 1434.4
550 551.84 1092.1  550 552.95 766.5  550 553.68 1465.7  550 556.76 1311.6
550 557.59 1247.3  550 558 1288.3  550 558.23 1115.257  550 567.66 1514.2
550 571.75 1249.9  550 571.82 1320  550 572.8 1397.2  550 577.89 1228  550
578 1580.1  550 578.5 1491.3  550 582.67 1304.3  550 587.75 1188.7  550
590.14 1476.8  550 592.07 1644.1  550 592.1 1334.4  550 596.9 1395.7  550
600.2 1468  550 602.76 978.3  550 604.01 1183.5  550 604.57 1051.49  550
608.98 1408.4  550 610.875 1189.9  550 616.45 1647.9  550 620.7 1193.3  550
623.58 1804  550 626.6 1575.8  550 629.16 1187.8  550 635.25 1468.2  550
638.34 1276  550 640.32 982.4  550 641 1241.3  550 647.5 1452.4  550 649.24
1826.5  750 653.56 1613.7  750 660.36 1731  750 665.22 1271.6  750 665.92
1172.369  750 669.03 1403.9  750 669.03 1261  750 669.94 1582.7  750 671.6
1296.4  750 673.35 1280.7  750 675.85 1306.8  750 678.43 1697.6  750 679.42
1435.1  750 679.48 1315.4  750 682.49 930.7  750 684.68 1612.1  750 685.29
1328.3  750 702.74 .3  750 704.58 980.6  750 712.97 1766.4  750 713.996
1163.7  750 714.4 1458  750 715.14 1238  750 717.14 1553.6  750 718.82
1653.9  750 720.55 1343.4  750 729.06 1053.063  750 730.754 1132  750 742.0
1293.2  750 755.87 1564.7  750 757.42 1211.7  750 764.03 1420.6  750 765.25
1449.4  750 766.08 1839  750 768.09 1579.1  750 769 1546.7  750 772.17
1779.6  750 772.41 1193.6  750 777.2 1880.7  750 783.62 1558.8  750 785.9
1259.4  750 788.64 1363.6  750 790.09 1398.4  750 793.22 1157.607  750
805.67 1135  750 808.99 1617.3  750 812.03 1246.4  750 820.672 1362  750
831.4 1586  750 842.51 1362.5  750 852.18 1597  950 852.18 1597  950 861.03
1554.4  950 865.26 1358.2  950 870.926 1713  950 872.74 1191.2  950 878.83
1544.1  950 895.62 1651.7  950 896.59 1233.2  950 901.22 1209.8  950 935.58
1278.7  950 944.11 1215.1  950 966.12 1334.8  950 991.9 1336.9  950 1025.16
1542.5  1150 1086.35 1382  1150 1142.5 1447.2  1150 1203.15 1262.4
x is the x-axis and y is the y-axis. x-Water should be used to produce the
horizontal error bars. How I can tell the program to do that.

Thanks

AA


Ahmed M. Attia


Research Assistant
Dept. of SoilCrop Sciences
Texas AM University
ahmed.at...@ag.tamu.edu
Cell phone: 001-979-248-5215
FAX: 001-308-455-4024



On Fri, Jul 18, 2014 at 3:30 PM, William Dunlap wdun...@tibco.com wrote:


Is 

Re: [R-es] FW: Selección eficiente de individuos

2014-07-18 Thread Francisco Javier
Hola Carlos, ¿No es posible trabajar con el primer script y ejemplo que me 
enviaste? El motivo es que no acabo de entender el funcionamiento de este 
segundo script (he cambiado algún dato), pues creo que presenta 2 
inconvenientes (por favor, corrígeme si me equivoco): datos - data.frame( 
id=1:3,
entra=c('2001-01-01','2002-06-01','2003-01-01'),
sale=c('2002-01-01','2002-12-31','2004-01-01')) # Entiendo que ref 
define los puntos que ha de cruzar el individuo:ref - 
new_interval(ymd('2001-12-31'), ymd('2003-12-31')) logical - mapply(   
   function(x,y,z) {int_overlaps(new_interval(x,y),z)}  
,datos$entra, datos$sale, ref)  TRUE TRUE TRUE El primer y 
el tercer individuo cruzan respectivamente el 31 dic 2001 y el 31 dic 2003, 
correcto. Pero el segundo individuo NO llega a cruzar el 31 de diciembre de 
2002 (pues sale justo en esa fecha), y en cambio el vector me devuelve ¿TRUE?   

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Re: [R-es] [Grupo de Usuarios R Madrid]: Siguiente reunión el 1-julio... (Agenda disponible)...

2014-07-18 Thread Carlos Ortega
Hola,

No sé si os puede interesar el que para empezar y coger un poco más de masa
crítica, el abrir un tanto más el alcance del grupo y unir fuerzas a otros
colectivos que ya tengan presencia por allí: Periodistas de Datos,
BigData, Analytics, etc.

A través de Meetup podéis ver si existen ya otros grupos en marcha con
estas inquietudes por vuestra zona. Seguramente los otros grupos también
necesiten de aliados para igualmente conseguir esta masa crítica.

Saludos,
Carlos Ortega
www.qualityexcellence.es




El 17 de julio de 2014, 23:11, Jose Luis Cañadas Reche 
canadasre...@gmail.com escribió:

 Me pilla un poco lejos de dónde trabajo. ;) Estaría interesado en que
 fuera en Córdoba o Granada. Sé que en Granada hay unos cuantos eRReros
 entre la uni y alguna que otra empresa, y en Málaga también hay unos
 cuantos..

 Saludos
 El 17/07/14 23:03, Rubén Gómez Antolí escribió:

  Hola:

 El 02/07/14 a las #4, Jose Luis Cañadas Reche escribió:

 [...]
 Ya de paso pregunto si alguien está interesado en
 hacer  un GIL (Grupo de Interés Local) en Andalucía..

 ¿En que zona tienes interés?

 En Almería no hay muchos eRReros pero alguno que otro estamos.

 Salud y Revolución.

 Lobo.


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-- 
Saludos,
Carlos Ortega
www.qualityexcellence.es

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Re: [R-es] FW: Selección eficiente de individuos

2014-07-18 Thread Carlos Ortega
Hola,

No, fíjate que en ref he puesto un intervalo mínimo de un día: el fin de
año del 2001  (2001-12-31) y el año nuevo del 2002 (2002-01-01). La idea de
que este intervalo sea mínimo tiene justamente esta idea de confirmar si el
empleado estuvo contratado tanto el 31 como el 1 del siguiente año.

Si amplias mucho este intervalo como has hecho a dos años enteros (2002 y
2003) se produce el overlap.

Saludos,
Carlos Ortega
www.qualityexcellence.es




El 18 de julio de 2014, 10:17, Francisco Javier iterado...@hotmail.com
escribió:

 Hola Carlos,

  ¿No es posible trabajar con el primer script y ejemplo que me enviaste?
 El motivo es que no acabo de entender el funcionamiento de este segundo
 script (he cambiado algún dato), pues creo que presenta 2 inconvenientes
 (por favor, corrígeme si me equivoco):



 datos - data.frame( id=1:3,

 entra=c('2001-01-01','2002-06-01','2003-01-01'),

 sale=c('2002-01-01','2002-12-31','2004-01-01'))

 # Entiendo que ref define los puntos que ha de cruzar el individuo:
 ref - new_interval(ymd('2001-12-31'), ymd('2003-12-31'))

 logical - mapply(
   function(x,y,z)
 {int_overlaps(new_interval(x,y),z)}
   ,datos$entra, datos$sale, ref)

  TRUE TRUE TRUE

 El primer y el tercer individuo cruzan respectivamente el 31 dic 2001 y el
 31 dic 2003, correcto. Pero el segundo individuo NO llega a cruzar el 31 de
 diciembre de 2002 (pues sale justo en esa fecha), y en cambio el vector me
 devuelve ¿TRUE?




-- 
Saludos,
Carlos Ortega
www.qualityexcellence.es

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Re: [R-es] [Grupo de Usuarios R Madrid]: Siguiente reunión el 1-julio... (Agenda disponible)...

2014-07-18 Thread Rubén Gómez Antolí
Hola:

El 18/07/14 a las #4, Carlos Ortega escribió:
 Hola,
 
 No sé si os puede interesar el que para empezar y coger un poco más de masa
 crítica, el abrir un tanto más el alcance del grupo y unir fuerzas a otros
 colectivos que ya tengan presencia por allí: Periodistas de Datos,
 BigData, Analytics, etc.

Aquí en la zona ya lleva un tiempo andando el colectivo Hacklab Almería
[0] con grupos de trabajo bastante heterogéneos: profesores,
electrónicos, Androideros, programadores... y entre ellos un grupo de
periodismo de datos.

Este último se esta poniendo las pilas pero, aunque se les hizo una
charla de iniciación/presentación de R, no se sienten demasiado
atraídos, por el momento.

 A través de Meetup podéis ver si existen ya otros grupos en marcha con
 [...]

Como digo, el Hacklab esta aglutinando a todos estos grupos más o menos
dispersos, no obstante daremos un vistazo por ahí a ver si hay alguien.

Gracias por la sugerencia.

 [...]
 
 El 17 de julio de 2014, 23:11, Jose Luis Cañadas Reche 
 canadasre...@gmail.com escribió:
 
 Me pilla un poco lejos de dónde trabajo. ;) Estaría interesado en que
 fuera en Córdoba o Granada. Sé que en Granada hay unos cuantos eRReros
 entre la uni y alguna que otra empresa, y en Málaga también hay unos
 cuantos..

Con el actual estado de las comunicaciones con esas ciudades desde
Almería, es un tanto inviable establecer un grupo estable de trabajo con
vosotros. Quizás alguna colaboración puntual...

En cualquier caso, bueno es saber que hay interés de montar algo en las
zonas próximas.

 Saludos

Salud y Revolución.

Lobo.

[0] http://www.hacklabalmeria.net/
-- 
Libertad es poder elegir en cualquier momento. Ahora yo elijo GNU/Linux,
para no atar mis manos con las cadenas del soft propietario.
Porque la libertad no es tu derecho, es tu responsabilidad.
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Desde El Ejido, en Almería, usuario registrado Linux #294013
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Re: [R-es] FW: Selección eficiente de individuos

2014-07-18 Thread Francisco Javier
Muchas gracias Carlos y Olivier por vuestra paciencia y por vuestra ayuda. 
¡Ahora ya sí que funciona! 
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