[R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread M . A . Parreño
 i already sent this please unsusbscribe
passoword: 33311986
or 33311986dic


please unsubscribe me

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Re: [R] R-help Digest, Vol 141, Issue 29

2014-11-29 Thread Tom Keller
http://www.bioperl.org/wiki/HOWTOs

On Nov 29, 2014, at 3:00 AM, r-help-requ...@r-project.org wrote:

Subject: Re: [R] perl


On Friday, November 28, 2014, Noha Osman 
nmo_...@usc.edumailto:nmo_...@usc.edu wrote:

Hi Folks


Iam a new user in perl and I have two questions .Hopefully I get any help



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[R] optimx

2014-11-29 Thread Glenn Schultz
Hello All,

I need some help with optimx, mostly due to my apparent lack of imagination 
than optimx itself.  Below is the pertinent code for which I have a question.  
I am fitting to the term structure of swap rates per Cox, Ingersoll, and Ross.  
As you can see the objective function is CIRTune.  I have set up the lower and 
upper bounds of the model for each kappa, lambda, and theta.  Everything works 
as expected.  

However, there is an additional constraint.
2 * kappa * lamba = sigma^2

My question is as follows:  should the constraint be worked into the function 
or should I add an additional parameter in the function that is controlled by 
lower and upper?

 #Objective function
  CIRTune - function(param = numeric(), shortrate = numeric(), sigma = .015, 
cfmatrix = matrix(), matmatrix = matrix()){
kappa =   param[1]
lambda = param[2]
theta = param[3]

Disc - CIRBondPrice(kappa = kappa, lambda = lambda, theta = theta, 
shortrate = shortrate, T= matmatrix,  step = 0, sigma = sigma)

   CIRTune - sqrt((sum(colSums((cfmatrix * Disc))^2))/ncol(matmatrix))
return(CIRTune)
  }
  
  # Fit the model to the market   
  fit - optimx(par = c(.1, .003, .03), 
fn = CIRTune, 
method = L-BFGS-B,
lower = c(rep(.001,3),
upper = rep(1, 3), 
shortrate = shortrate,
sigma = .015,
cfmatrix = CIR.CF.Matrix, 
matmatrix = CIR.Mat.Matrix)  
  close(CalCIR1)
  return(fit)


Thank-you in advance,
Glenn
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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread Bert Gunter
Please please follow the mailing list link below and unsubscribe
yourself there as directed, not here.

-- Bert

Bert Gunter
Genentech Nonclinical Biostatistics
(650) 467-7374

Data is not information. Information is not knowledge. And knowledge
is certainly not wisdom.
Clifford Stoll




On Sat, Nov 29, 2014 at 5:26 AM, M. A. Parreño map...@gmail.com wrote:
  i already sent this please unsusbscribe
 passoword: 33311986
 or 33311986dic


 please unsubscribe me

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Re: [R] Using Rmpfr to round with precision in R

2014-11-29 Thread Artur Augusto
Thanks Martin, looks like the update fixed the issue.

The round2 function is just to format the output.

now I can get the correct result:

library(Rmpfr)
sprintf(%#.2f, round(mpfr(1.152, 200),2))
round2(1.152, 2)
#[1] 1.15

Artur

2014-11-27 7:10 GMT-02:00 Martin Maechler maech...@stat.math.ethz.ch:
 Artur Augusto arturaugu...@gmail.com
 on Wed, 19 Nov 2014 15:26:12 -0200 writes:

  I'm trying to use the Rmpfr library with the round() function to apply
  the round half to even rule and achieve correct results, without
  errors due the finite precision of float point values.

  Example of problem:

  round(1.225,2)
  #[1] 1.23

  So far, this is what I've achieved:

  library(Rmpfr)
  x - c(1.225, 1.2225, 1.5, 1.25)
  n - c(2, 3, 4, 5)
  round2 - function(x, n){
  sprintf(paste(%#., n, f, sep=), round(mpfr(as.character(x), 200), 
 n))
  }
  mapply(round2, x, n)
  #[1] 1.221.222   1.  1.2

 The above  round2() function is really pretty strange [what do you really 
 want?]
 but below,  you have a very good point :

  But in some cases I don't get the desired results:

  round2(1.152, 2)# Should be 1.15
  #[1] 1.16

  Reading the Rmpfr docs, at the roundMpfr() function, it says:

 Actually,  roundMpfr() is *not* used  by  round(mpfr, *)
 It has somewhat different semantics. That's why I used a new
 function name, roundMpfr(),  whereas the round() method for
 mpfr objects is what you get from

 selectMethod(round, mpfr)

  The mpfr class group method Math2 implements a method for round(x,
  digits) which rounds to decimal digits.

 Indeed... and that is different from the roundMpfr() as
 mentioned above.

  But I can't figure how to use it.

  How can I achieve desired rounded results?
  Artur

 Wait a day or two [depending on how quickly the new Rmpfr version 0.5-7
 gets published on CRAN], and update your Rmpfr package.
 The problem is fixed in Rmpfr 0.5-7.

 If you had CC'ed your e-mail to
maintainer(Rmpfr)
 I would have heard of the problem earlier and almost surely
 have fixed it earlier.

 Best regards,
 Martin Maechler  (maintainer of 'Rmpfr').

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Re: [R] optimx

2014-11-29 Thread Ben Bolker
Glenn Schultz glennmschultz at me.com writes:

 
 Hello All,
 
 I need some help with optimx, mostly due to my apparent lack of
 imagination than optimx itself.  Below is the pertinent code for
 which I have a question.  I am fitting to the term structure of swap
 rates per Cox, Ingersoll, and Ross.  As you can see the objective
 function is CIRTune.  I have set up the lower and upper bounds of
 the model for each kappa, lambda, and theta.  Everything works as
 expected.
 
 However, there is an additional constraint.
 2 * kappa * lamba = sigma^2
 
 My question is as follows: should the constraint be worked into the
 function or should I add an additional parameter in the function
 that is controlled by lower and upper?

  This is a general question about constrained optimization, not
just about optimx (e.g. it would apply to the L-BFGS-B method for
base::optim() as well).  In general the best way to handle this
(I think) would be reparameterize your model slightly, substituting
gamma = 2*kappa*lambda-sigma^2 for either lambda or kappa.  Then
you know that gamma must be =0, and you can compute the appropriate
value of (e.g.) lambda = (gamma+sigma^2)/(2*kappa) on the fly from
the specified values of kappa and gamma.  This will automatically
satisfy the lambda0 constraint (if gamma, sigma, kappa are all 0),
but you need to check what's necessary to satisfy the other
(lambda1) constraint; I haven't worked all the way through that
(left as an exercise), but if it can't definitely be satisfied
by an independent constraint on gamma then you're in trouble
(you have to work out what values of kappa, sigma, and gamma
could lead to lambda1, then see if it's possible to prevent them
by assigning independent constraints).

If you *are* in trouble, then you need to find an optimizer
that can handle nonlinear inequality constraints.  I think the nloptr
package might have one, or you can do this by hand (1) exactly by
Lagrange multipliers or (2) approximately by imposing a nonlinear penalty
when the constraint is violated.

  #Objective function
   CIRTune - function(param = numeric(), 
 shortrate = numeric(), sigma = .015, cfmatrix = matrix(),
 matmatrix = matrix()){
 kappa =   param[1]
 lambda = param[2]
 theta = param[3]
 
 Disc - CIRBondPrice(kappa = kappa, lambda = lambda, 
 theta = theta, shortrate = shortrate, T= matmatrix, 
 step = 0, sigma = sigma)
 
CIRTune - sqrt((sum(colSums((cfmatrix * Disc))^2))/ncol(matmatrix))
 return(CIRTune)
   }
 
   # Fit the model to the market   
   fit - optimx(par = c(.1, .003, .03), 
 fn = CIRTune, 
 method = L-BFGS-B,
 lower = c(rep(.001,3),
 upper = rep(1, 3), 
 shortrate = shortrate,
 sigma = .015,
 cfmatrix = CIR.CF.Matrix, 
 matmatrix = CIR.Mat.Matrix)  
   close(CalCIR1)
   return(fit)

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Re: [R] package submission

2014-11-29 Thread Paul Gilbert


I was similarly bitten a couple of days ago when I submitted an update
of my deldir package.  I'm*pretty*  sure that I completed all the
requisite steps in the steps in the web-based submission procedure, but
I never received the promised confirmation email.  Being a thicko, I
overlooked this fact, and started to wonder why the update never
appeared on CRAN.  Eventually I got my act together, went over the
instructions and re-submitted the package.  This time I got the
confirmation email, and the update duly appeared on CRAN.

Maybe there's a buglet in the software that effects the automated
submission procedure.


I was similarly bitten but, paying closer attention on the second 
attempt, I suspect I thought I was finished at  successfully uploaded 
and I did not go all the way to the very bottom to see that I then had 
to click on submit to get the successfully submitted page. (Text of 
the messages from memory, so may not be exact.) Once successfully 
submitted, the email asking for confirmation is almost instantaneous.


For users like me that push the boundaries of discovering possible user 
errors, it would be helpful if the first message said successfully 
uploaded - now read this page and submit at the bottom.


Paul

I would have said it's more likely that I

fumble-fingered something in my initial submission attempt.  However,
hearing that someone else has had a similar experience makes me a wee
bit more suspicious that there's a bug.  Could be tricky to track down
but, given that if there is a bug its effect is intermittent and rare.

cheers,

Rolf Turner

P. S.  On my second try, the confirmation email arrived essentially
instantaneously.  So I would advise package submitters:  if you don't
get the confirmation email*right away*  then something has very likely
gone wrong.  Check the siteftp://CRAN.R-project.org/incoming/  as
advised and if your package ain't there, try again.

R. T.

On 29/11/14 09:11, Henrik Bengtsson wrote:

Fromhttp://cran.r-project.org/web/packages/policies.html:

When submitting a package to CRAN you should use the submission form
athttp://CRAN.R-project.org/submit.html  (and not send an email). You
will be sent a confirmation email which needs to be accepted.(*)
...
In either case, you can check that the submission was received by
looking atftp://CRAN.R-project.org/incoming/.;

(*) That confirmation email is sent automatically and instantaneously.
It confirms you as a maintainer and the submission (not the
acceptance).

/Henrik

On Fri, Nov 28, 2014 at 6:35 AM, Duncan Murdoch
murdoch.dun...@gmail.com  wrote:

On 28/11/2014 9:16 AM, Dan Vatnik wrote:


Hi,

I am the maintainer of the traj package.
I have added a vignette to the package this week(Wednesday) and uploaded
the new tarball to CRAN.
I have not yet received a confirmation e-mail.I do not know if the e-mail
is sent automatically or if a person needs to approve manually. I am just
wondering if I did everything correctly
or if there is a mistake in my uploading procedure.



The CRAN people make the decisions manually, so it may just be that nobody
has got to it yet.If you don't hear from them in a week, you might
consider writing to the submission email address, but I wouldn't do it
sooner than that.

-- Rolf Turner Technical Editor ANZJS


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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread John Sorkin
 Requests like this appear from time to time. Would it make sense to
add a link to the bottom of the email messages generated by the mail
program that is labeled and goes directly to the unsubscribe page?
 John


 On Nov 29, 2014, at 8:26 AM, M. A. Parreñomap...@gmail.com
map...@gmail.com wrote:
 
 i already sent this please unsusbscribe
 passoword: 33311986
 or 33311986dic
 
 
 please unsubscribe me
 
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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread Jeff Newmiller
In what way would that be unlike the link that is already there?
---
Jeff NewmillerThe .   .  Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
  Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
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--- 
Sent from my phone. Please excuse my brevity.

On November 29, 2014 4:09:29 PM PST, John Sorkin jsor...@grecc.umaryland.edu 
wrote:
 Requests like this appear from time to time. Would it make sense to
add a link to the bottom of the email messages generated by the mail
program that is labeled and goes directly to the unsubscribe page?
 John


 On Nov 29, 2014, at 8:26 AM, M. A. Parreñomap...@gmail.com
map...@gmail.com wrote:
 
 i already sent this please unsusbscribe
 passoword: 33311986
 or 33311986dic
 
 
 please unsubscribe me
 
[[alternative HTML version deleted]]
 
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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread John Sorkin
I don't see a link that is labeled unsubscribe.
John

 John David Sorkin M.D., Ph.D.
 Professor of Medicine
 Chief, Biostatistics and Informatics
 University of Maryland School of Medicine Division of Gerontology and
Geriatric Medicine
 Baltimore VA Medical Center
 10 North Greene Street
 GRECC (BT/18/GR)
 Baltimore, MD 21201-1524
 (Phone) 410-605-7119
 (Fax) 410-605-7913 (Please call phone number above prior to faxing)


 On Nov 29, 2014, at 7:35 PM, Jeff Newmiller jdnew...@dcn.davis.ca.us
wrote:
 
 In what way would that be unlike the link that is already there?

---
 Jeff NewmillerThe .   .  Go
Live...
 DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live
Go...
  Live:   OO#.. Dead: OO#.. 
Playing
 Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
 /Software/Embedded Controllers)   .OO#.   .OO#. 
rocks...1k

---

 Sent from my phone. Please excuse my brevity.
 
 On November 29, 2014 4:09:29 PM PST, John Sorkin
jsor...@grecc.umaryland.edu wrote:
 Requests like this appear from time to time. Would it make sense to
 add a link to the bottom of the email messages generated by the mail
 program that is labeled and goes directly to the unsubscribe page?
 John
 
 
 On Nov 29, 2014, at 8:26 AM, M. A. Parreñomap...@gmail.com
 map...@gmail.com wrote:
 
 i already sent this please unsusbscribe
 passoword: 33311986
 or 33311986dic
 
 
 please unsubscribe me
 
   [[alternative HTML version deleted]]
 
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 Confidentiality Statement:
 This email message, including any attachments, is for the sole use of
 the intended recipient(s) and may contain confidential and privileged
 information. Any unauthorized use, disclosure or distribution is
 prohibited. If you are not the intended recipient, please contact the
 sender by reply email and destroy all copies of the original message.

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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread Rolf Turner

On 30/11/14 14:16, John Sorkin wrote:

I don't see a link that is labeled unsubscribe.


SNIP


On Nov 29, 2014, at 7:35 PM, Jeff Newmiller jdnew...@dcn.davis.ca.us

wrote:


In what way would that be unlike the link that is already there?


SNIP


On November 29, 2014 4:09:29 PM PST, John Sorkin

jsor...@grecc.umaryland.edu wrote:

Requests like this appear from time to time. Would it make sense to

add a link to the bottom of the email messages generated by the mail
program that is labeled and goes directly to the unsubscribe page?


Well, there is no unsubscribe page as such.  The link given, i.e.

https://stat.ethz.ch/mailman/listinfo/r-help

takes you to the primary help page. That provides a link to a (password 
protected) page where you can handle all matters pertaining to your

r-help subscription, including unsubscribing.

I suppose that it might be possible to provide a link taking one 
directly to this second page, but:


(1) It would add clutter (I'm sure we don't want to delete the link to 
the primary help page).


(2) The password protection might get complicated; I don't know about 
such matters.


(3) I don't think we want to waste time and resources helping people who 
are too stupid and illiterate to find their way to the unsubscribe 
facility on the basis of what is already provided.  They shouldn't be
R users in the first place.  One needs at least two grey cells to rub 
together to deal with R.


cheers,

Rolf Turner

--
Rolf Turner
Technical Editor ANZJS

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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread Fábio Magalhães
I think r-help list software supports unsubscribe headers. When this
option is enabled an additional header containing an unsubscribe link
is sent with every message do the list. This header is interpreted by
some email clients like Hotmail and Gmail, and a small unsubscribe
button is placed after the sender's email.

Enabling this won't hurt, it won't add more text to emails and maybe
can save a few messages like this.

#! Fábio


On Sun, Nov 30, 2014 at 12:14 AM, Rolf Turner r.tur...@auckland.ac.nz wrote:
 On 30/11/14 14:16, John Sorkin wrote:

 I don't see a link that is labeled unsubscribe.


 SNIP

 On Nov 29, 2014, at 7:35 PM, Jeff Newmiller jdnew...@dcn.davis.ca.us

 wrote:


 In what way would that be unlike the link that is already there?


 SNIP

 On November 29, 2014 4:09:29 PM PST, John Sorkin

 jsor...@grecc.umaryland.edu wrote:

 Requests like this appear from time to time. Would it make sense to

 add a link to the bottom of the email messages generated by the mail
 program that is labeled and goes directly to the unsubscribe page?


 Well, there is no unsubscribe page as such.  The link given, i.e.

 https://stat.ethz.ch/mailman/listinfo/r-help

 takes you to the primary help page. That provides a link to a (password
 protected) page where you can handle all matters pertaining to your
 r-help subscription, including unsubscribing.

 I suppose that it might be possible to provide a link taking one directly to
 this second page, but:

 (1) It would add clutter (I'm sure we don't want to delete the link to the
 primary help page).

 (2) The password protection might get complicated; I don't know about such
 matters.

 (3) I don't think we want to waste time and resources helping people who are
 too stupid and illiterate to find their way to the unsubscribe facility on
 the basis of what is already provided.  They shouldn't be
 R users in the first place.  One needs at least two grey cells to rub
 together to deal with R.

 cheers,

 Rolf Turner

 --
 Rolf Turner
 Technical Editor ANZJS


 __
 R-help@r-project.org mailing list
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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread Jeff Newmiller
To be fair, Rolf, they have already found difficulty and are trying to find 
their way out of this torrent, and impeding their way is not in anyone's 
interest.

John: I agree that adding the word unsubscribe to the footer would probably 
help those lost enough to be mailing the list. The existing web page does have 
that word on it, though.

Fabio: I was unaware of the unsubscribe header... looks interesting, though I 
would be concerned that it seems like it might bypass the password protection 
currently in place, making it susceptible to abuse. However, there seem to be 
quite a lot of organizations using it so it may work better than my initial 
impression tells me it does.


---
Jeff NewmillerThe .   .  Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
  Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
/Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
--- 
Sent from my phone. Please excuse my brevity.

On November 29, 2014 6:14:11 PM PST, Rolf Turner r.tur...@auckland.ac.nz 
wrote:
On 30/11/14 14:16, John Sorkin wrote:
 I don't see a link that is labeled unsubscribe.

SNIP

 On Nov 29, 2014, at 7:35 PM, Jeff Newmiller
jdnew...@dcn.davis.ca.us
 wrote:

 In what way would that be unlike the link that is already there?

SNIP

 On November 29, 2014 4:09:29 PM PST, John Sorkin
 jsor...@grecc.umaryland.edu wrote:
 Requests like this appear from time to time. Would it make sense
to
 add a link to the bottom of the email messages generated by the
mail
 program that is labeled and goes directly to the unsubscribe page?

Well, there is no unsubscribe page as such.  The link given, i.e.

 https://stat.ethz.ch/mailman/listinfo/r-help

takes you to the primary help page. That provides a link to a (password

protected) page where you can handle all matters pertaining to your
r-help subscription, including unsubscribing.

I suppose that it might be possible to provide a link taking one 
directly to this second page, but:

(1) It would add clutter (I'm sure we don't want to delete the link to 
the primary help page).

(2) The password protection might get complicated; I don't know about 
such matters.

(3) I don't think we want to waste time and resources helping people
who 
are too stupid and illiterate to find their way to the unsubscribe 
facility on the basis of what is already provided.  They shouldn't be
R users in the first place.  One needs at least two grey cells to rub 
together to deal with R.

cheers,

Rolf Turner

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread Henrik Bengtsson
On Sat, Nov 29, 2014 at 7:32 PM, Jeff Newmiller
jdnew...@dcn.davis.ca.us wrote:
 To be fair, Rolf, they have already found difficulty and are trying to find 
 their way out of this torrent, and impeding their way is not in anyone's 
 interest.

 John: I agree that adding the word unsubscribe to the footer would probably 
 help those lost enough to be mailing the list. The existing web page does 
 have that word on it, though.

 Fabio: I was unaware of the unsubscribe header... looks interesting, though I 
 would be concerned that it seems like it might bypass the password protection 
 currently in place, making it susceptible to abuse. However, there seem to be 
 quite a lot of organizations using it so it may work better than my initial 
 impression tells me it does.

FYI, if you look at the raw email messages, they all have the
following in the header:

X-Mailman-Version: 2.1.18-1
Precedence: list
List-Id: Main R Mailing List: Primary help r-help.r-project.org
List-Unsubscribe: https://stat.ethz.ch/mailman/options/r-help,
mailto:r-help-requ...@r-project.org?subject=unsubscribe
List-Archive: https://stat.ethz.ch/pipermail/r-help/
List-Post: mailto:r-help@r-project.org
List-Help: mailto:r-help-requ...@r-project.org?subject=help
List-Subscribe: https://stat.ethz.ch/mailman/listinfo/r-help,
mailto:r-help-requ...@r-project.org?subject=subscribe

Note that List-Unsubscribe field
[http://www.faqs.org/rfcs/rfc2369.html].  That does not seem to be
enough to have Gmail add a unsubscribe button/link (which is indeed
a useful UX feature).  Google mention some more requirements in
https://support.google.com/mail/answer/81126#unsub, particularly
'Precedence: bulk', which I find on since mailing lists typically
use list just as r-help does.  I also found a mentioning on DKIM
key signature being required
[http://blog.mailchimp.com/gmails-new-unsubscribe-link-and-feedback-loop/].
So, not sure how easy it is to enable all this for the list(s) (which
are handled by Mailman).

My $.02

/Henrik




 ---
 Jeff NewmillerThe .   .  Go Live...
 DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
   Live:   OO#.. Dead: OO#..  Playing
 Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
 /Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
 ---
 Sent from my phone. Please excuse my brevity.

 On November 29, 2014 6:14:11 PM PST, Rolf Turner r.tur...@auckland.ac.nz 
 wrote:
On 30/11/14 14:16, John Sorkin wrote:
 I don't see a link that is labeled unsubscribe.

SNIP

 On Nov 29, 2014, at 7:35 PM, Jeff Newmiller
jdnew...@dcn.davis.ca.us
 wrote:

 In what way would that be unlike the link that is already there?

SNIP

 On November 29, 2014 4:09:29 PM PST, John Sorkin
 jsor...@grecc.umaryland.edu wrote:
 Requests like this appear from time to time. Would it make sense
to
 add a link to the bottom of the email messages generated by the
mail
 program that is labeled and goes directly to the unsubscribe page?

Well, there is no unsubscribe page as such.  The link given, i.e.

 https://stat.ethz.ch/mailman/listinfo/r-help

takes you to the primary help page. That provides a link to a (password

protected) page where you can handle all matters pertaining to your
r-help subscription, including unsubscribing.

I suppose that it might be possible to provide a link taking one
directly to this second page, but:

(1) It would add clutter (I'm sure we don't want to delete the link to
the primary help page).

(2) The password protection might get complicated; I don't know about
such matters.

(3) I don't think we want to waste time and resources helping people
who
are too stupid and illiterate to find their way to the unsubscribe
facility on the basis of what is already provided.  They shouldn't be
R users in the first place.  One needs at least two grey cells to rub
together to deal with R.

cheers,

Rolf Turner

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] trouble installing R from source on Windows 8

2014-11-29 Thread Erin Hodgess
Hello everyone!

I'm trying to install R-3.1.2 from source on a Windows 8 laptop.

I installed Rtools 3.1 as administrator and is was fine so far.

Then I downloaded the R-3.1.2.tar.gz file and attempted to use the tar
command,
also from the shell as administrator.

I keep getting the following:
tar -xf R-3.1.2.tar.gz
tar(child): gzip: Cannot exec: no such file or directory
tar(child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors

I have downloaded from several different mirrors, (both Rtools and
R-3.1.2.tar.gz), and have turned off the firewall (McAfee).

Has anyone else run into this, please?

Thanks so much,
Sincerely,
Erin


-- 
Erin Hodgess
Associate Professor
Department of Mathematical and Statistics
University of Houston - Downtown
mailto: erinm.hodg...@gmail.com

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] trouble installing R from source on Windows 8

2014-11-29 Thread Jeff Newmiller
Stop using administrator. If and only if Windows prompts you for permission to 
install, give it your password. Stay as far away from administrator as you can.
---
Jeff NewmillerThe .   .  Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
  Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
/Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
--- 
Sent from my phone. Please excuse my brevity.

On November 29, 2014 8:51:23 PM PST, Erin Hodgess erinm.hodg...@gmail.com 
wrote:
Hello everyone!

I'm trying to install R-3.1.2 from source on a Windows 8 laptop.

I installed Rtools 3.1 as administrator and is was fine so far.

Then I downloaded the R-3.1.2.tar.gz file and attempted to use the tar
command,
also from the shell as administrator.

I keep getting the following:
tar -xf R-3.1.2.tar.gz
tar(child): gzip: Cannot exec: no such file or directory
tar(child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors

I have downloaded from several different mirrors, (both Rtools and
R-3.1.2.tar.gz), and have turned off the firewall (McAfee).

Has anyone else run into this, please?

Thanks so much,
Sincerely,
Erin

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


[R] Remove the border/frame in a dotplot()

2014-11-29 Thread stéphanie braun via R-help
Dear listmembersI wouldlike to remove in a dotplot() the border/frame from the 
figure and only keepthe x- and y-axis. I can’t find a way to do this. bty=n 
does notwork. Can somebody help? I include the r coding for my figure below. 
dotplot(plant_species ~ mean, data =botany,aspect= 1.5,    
scales=list(x=list(tck=c(-1,0)),y = list(tck=c(-1,0))),    ylab= Plant 
species,    xlim= c(-1.1, 1.1),    xlab= Electivity 
index,prepanel = NULL,    panel= function (x, y) {    
panel.abline(v=0)    panel.xyplot(x,y, pch = 16, col = black) 
   panel.segments(botany$lower,as.numeric(y),    
botany$upper,as.numeric(y), lty = 1, col = black)} 
 
Thank you!Stéphanie

  
[[alternative HTML version deleted]]

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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] please please unsubscribe!!!!!!!!!!!!!!!!

2014-11-29 Thread listserve
Any mailing list which respects its recipients makes unsubscribing as 
easy as possible. If users are having trouble doing so, it's clearly not 
easy enough.


I think putting a directly link in every message is certainly the right 
thing to do.


On 11/29/2014 09:14 PM, Rolf Turner wrote:

On 30/11/14 14:16, John Sorkin wrote:

I don't see a link that is labeled unsubscribe.


SNIP


On Nov 29, 2014, at 7:35 PM, Jeff Newmiller jdnew...@dcn.davis.ca.us

wrote:


In what way would that be unlike the link that is already there?


SNIP


On November 29, 2014 4:09:29 PM PST, John Sorkin

jsor...@grecc.umaryland.edu wrote:

Requests like this appear from time to time. Would it make sense to

add a link to the bottom of the email messages generated by the mail
program that is labeled and goes directly to the unsubscribe page?


Well, there is no unsubscribe page as such.  The link given, i.e.

 https://stat.ethz.ch/mailman/listinfo/r-help

takes you to the primary help page. That provides a link to a (password
protected) page where you can handle all matters pertaining to your
r-help subscription, including unsubscribing.

I suppose that it might be possible to provide a link taking one
directly to this second page, but:

(1) It would add clutter (I'm sure we don't want to delete the link to
the primary help page).

(2) The password protection might get complicated; I don't know about
such matters.

(3) I don't think we want to waste time and resources helping people who
are too stupid and illiterate to find their way to the unsubscribe
facility on the basis of what is already provided.  They shouldn't be
R users in the first place.  One needs at least two grey cells to rub
together to deal with R.

cheers,

Rolf Turner



__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] trouble installing R from source on Windows 8

2014-11-29 Thread Uwe Ligges



On 30.11.2014 06:29, Jeff Newmiller wrote:

Stop using administrator. If and only if Windows prompts you for permission to 
install, give it your password. Stay as far away from administrator as you can.


Which is not the reason here: gzip is not on  the PATH, i.e. Erin forgot 
to put the Rtools/bin directory on her PATH...


Best,
Uwe Ligges



---
Jeff NewmillerThe .   .  Go Live...
DCN:jdnew...@dcn.davis.ca.usBasics: ##.#.   ##.#.  Live Go...
   Live:   OO#.. Dead: OO#..  Playing
Research Engineer (Solar/BatteriesO.O#.   #.O#.  with
/Software/Embedded Controllers)   .OO#.   .OO#.  rocks...1k
---
Sent from my phone. Please excuse my brevity.

On November 29, 2014 8:51:23 PM PST, Erin Hodgess erinm.hodg...@gmail.com 
wrote:

Hello everyone!

I'm trying to install R-3.1.2 from source on a Windows 8 laptop.

I installed Rtools 3.1 as administrator and is was fine so far.

Then I downloaded the R-3.1.2.tar.gz file and attempted to use the tar
command,
also from the shell as administrator.

I keep getting the following:
tar -xf R-3.1.2.tar.gz
tar(child): gzip: Cannot exec: no such file or directory
tar(child): Error is not recoverable: exiting now
tar: Child returned status 2
tar: Exiting with failure status due to previous errors

I have downloaded from several different mirrors, (both Rtools and
R-3.1.2.tar.gz), and have turned off the firewall (McAfee).

Has anyone else run into this, please?

Thanks so much,
Sincerely,
Erin


__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.



__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.