Re: [R] beta binomial distribution installation
Hi there,
It looks like you also need the bioconductor package biobase, I found
instructions for downloading that package here: www.bioconductor.org/install
Good luck.
Cheers,
Rhydwyn
-Original Message-
From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of Amany
Abdel-Karim
Sent: Wednesday, 1 November 2017 2:13 PM
To: r-h...@stat.math.ethz.ch
Subject: [R] beta binomial distribution installation
Hello,
I tried to install package TailRank using the command install.packages
(RankTail) and library (TailRank) but I got the following errors. So, how can I
install TaiRank in Rstudio to have se beta-binomial distribution, CDF and
inverse CDG of beta-binomal?
The commands I used are:
> install.packages("TailRank")
Installing package into C:/Users/stator-guest/Documents/R/win-library/3.4
(as lib is unspecified)
Warning in install.packages :
dependency Biobase is not available
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_3.1.3.zip'
Content type 'application/zip' length 331270 bytes (323 KB)
downloaded 323 KB
package TailRank successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\downloaded_packages
> library(TailRank)
Error: package or namespace load failed for TailRank in loadNamespace(i,
c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called Biobase
In addition: Warning message:
package TailRank was built under R version 3.4.2
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[R] beta binomial distribution installation
Hello,
I tried to install package �TailRank� using the command install.packages
(RankTail) and library (TailRank) but I got the following errors. So, how can I
install TaiRank in Rstudio to have se beta-binomial distribution, CDF and
inverse CDG of beta-binomal?
The commands I used are:
> install.packages("TailRank")
Installing package into �C:/Users/stator-guest/Documents/R/win-library/3.4�
(as �lib� is unspecified)
Warning in install.packages :
dependency �Biobase� is not available
trying URL 'https://cran.rstudio.com/bin/windows/contrib/3.4/TailRank_3.1.3.zip'
Content type 'application/zip' length 331270 bytes (323 KB)
downloaded 323 KB
package �TailRank� successfully unpacked and MD5 sums checked
The downloaded binary packages are in
C:\Users\stator-guest\AppData\Local\Temp\RtmpoVx40V\downloaded_packages
> library(TailRank)
Error: package or namespace load failed for �TailRank� in loadNamespace(i,
c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
there is no package called �Biobase�
In addition: Warning message:
package �TailRank� was built under R version 3.4.2
[[alternative HTML version deleted]]
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Re: [R] Help with Nesting
Hello,
This is cross-posted from
https://stackoverflow.com/questions/47042591/how-to-resolve-nested-variables-inside-a-loop-in-r
And you already have the answer there. See my comment.
Rui Barradas
Em 31-10-2017 19:00, Edward Guda via R-help escreveu:
How do i resolve this?
symbol <- c('RRR' ,'GGG')
for(i in seq_along(symbol)) {
dat <- Quandl("LLL/symbol[i]")
}
required solutionis a loop where Quandl is a function and it loops as flows,
Quandl("LLL/RRR")
Quandl("LLL/GGG")
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Re: [R] Scatterplot3d :: Rotating x tick labels by x degrees
Thanks Jim, I will research. I appreciate the response. On Oct 31, 2017, at 9:33 PM, Jim Lemon mailto:drjimle...@gmail.com>> wrote: Well, scatterplot3d might not allow it, but have a look at the second example for staxlab in the plotrix package. Jim On Wed, Nov 1, 2017 at 7:30 AM, Uwe Ligges mailto:lig...@statistik.tu-dortmund.de>> wrote: On 31.10.2017 00:56, Alex Restrepo wrote: ... 45 degree rotation is not supported in base R graphics and scatterplot3d uses that. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Scatterplot3d :: Rotating x tick labels by x degrees
Hello,
David, don’t worry about answering this question or any of my inquiries in the
future. Not looking for code servants. Definitely not an expert at using the
scatter plot 3D library. That being said, I plan on researching rgl as was
recommended so kindly on a previous response to my question.
Regards, Alex
On Oct 31, 2017, at 4:13 PM, David Winsemius
mailto:dwinsem...@comcast.net>> wrote:
On Oct 31, 2017, at 8:55 AM, Olivier Crouzet
mailto:olivier.crou...@univ-nantes.fr>> wrote:
Hi Alex,
this should be related to the "las" argument of "par()" but
actually it does not seem to be parametered in scatterplot3d.
Searching the net for "scatterplot3d las" provides a link to:
https://stackoverflow.com/questions/25458652/specifying-the-orientation-of-the-axes-labels-in-scatterplot3d
You may try the solution that is provided in this link or consider using
alternate packages (like rgl or the plotly packages which one may be
more powerfull as far as I can judge). However I can't help more. It
seems ggplot does not produce 3d plots (but it looks like it can
interact with plotly when using 3d plots).
Olivier;
The cited SO solutions (mine being the first one) were addressing the request
for rotated "axis"-labels rather than rotated "axtick"-labels, although the
general strategy of looking at the code and using the `text`-function with
xpd=TRUE (rather than the `mtext`-function where needed in the definitions of
mytext and mytext2) should apply.
Alex;
I'd encourage you to demonstrate more initiative rather than expecting us to be
on-call code servants. I've decided to limit my gratis coding time to 15
minutes daily. I think this might take me an hour or more. I'm still available
for on-list code review on this effort.
As a start, I'd suggest downloading the scatterplot3d package code and then
open up scatterplot3d.R. Find the comment
## label tick marks
... and perhaps decide whether you need to use `text` rather than `mtext`.
(`text` can rotate by any amount,
but may need "xpd" to be set TRUE. `mtext` is limited to 90 degree increments.)
I've used up my time, so the next move is yours.
--
David.
Olivier.
On Mon, 30 Oct 2017
23:56:02 + Alex Restrepo
mailto:alex.restr...@outlook.com>> wrote:
Hi,
I would like to rotate the x axis tick labels by 45 degrees. Using
the code below, could someone please provide an example? Many
Thanks In Advance, Alex
library("scatterplot3d")
mydf=data.frame(rate=seq(158, 314)
,age=seq(1, 157)
,market_date=seq(as.Date("2000/1/1"), as.Date
("2003/1/1"), by="7 days"))
mydf$market_date=as.Date(mydf$market_date, format="%Y-%m-%d")
scatterplot3d(mydf$market_date
,mydf$rate
,mydf$age
,x.ticklabs = seq(as.Date("2000/1/1"), as.Date
("2003/1/1"), by="330 days"))
[[alternative HTML version deleted]]
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PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html and provide commented,
minimal, self-contained, reproducible code.
--
Olivier Crouzet, PhD
/Assistant Professor/
@LLING - Laboratoire de Linguistique de Nantes
UMR6310 CNRS / Université de Nantes
/Guest Researcher/
@UMCG (University Medical Center Groningen)
ENT department
Rijksuniversiteit Groningen
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and provide commented, minimal, self-contained, reproducible code.
David Winsemius
Alameda, CA, USA
'Any technology distinguishable from magic is insufficiently advanced.'
-Gehm's Corollary to Clarke's Third Law
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Re: [R] Scatterplot3d :: Rotating x tick labels by x degrees
Well, scatterplot3d might not allow it, but have a look at the second example for staxlab in the plotrix package. Jim On Wed, Nov 1, 2017 at 7:30 AM, Uwe Ligges wrote: > > > On 31.10.2017 00:56, Alex Restrepo wrote: > ... > 45 degree rotation is not supported in base R graphics and scatterplot3d > uses that. > __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Help with Nesting
R does not look inside strings for language objects like your symbol variable.
Nor does it magically figure out that it needs to keep previous values in a
loop. And you need to be able to use valid syntax to ask clear questions in
this list, so some more time with a tutorial should occur before you post again.
Perhaps:
result <- lapply( symbol, function(s) {
Quandl( paste0( "LLL/", s ) )
}
result
--
Sent from my phone. Please excuse my brevity.
On October 31, 2017 12:00:41 PM PDT, Edward Guda via R-help
wrote:
>How do i resolve this?
>
>symbol <- c('RRR' ,'GGG')
>
>for(i in seq_along(symbol)) {
> dat <- Quandl("LLL/symbol[i]")
>
>}
>
>required solutionis a loop where Quandl is a function and it loops as
>flows,
>Quandl("LLL/RRR")
>Quandl("LLL/GGG")
>
>__
>R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Scatterplot3d :: Rotating x tick labels by x degrees
> On Oct 31, 2017, at 8:55 AM, Olivier Crouzet
> wrote:
>
> Hi Alex,
>
> this should be related to the "las" argument of "par()" but
> actually it does not seem to be parametered in scatterplot3d.
> Searching the net for "scatterplot3d las" provides a link to:
>
> https://stackoverflow.com/questions/25458652/specifying-the-orientation-of-the-axes-labels-in-scatterplot3d
>
> You may try the solution that is provided in this link or consider using
> alternate packages (like rgl or the plotly packages which one may be
> more powerfull as far as I can judge). However I can't help more. It
> seems ggplot does not produce 3d plots (but it looks like it can
> interact with plotly when using 3d plots).
Olivier;
The cited SO solutions (mine being the first one) were addressing the request
for rotated "axis"-labels rather than rotated "axtick"-labels, although the
general strategy of looking at the code and using the `text`-function with
xpd=TRUE (rather than the `mtext`-function where needed in the definitions of
mytext and mytext2) should apply.
Alex;
I'd encourage you to demonstrate more initiative rather than expecting us to be
on-call code servants. I've decided to limit my gratis coding time to 15
minutes daily. I think this might take me an hour or more. I'm still available
for on-list code review on this effort.
As a start, I'd suggest downloading the scatterplot3d package code and then
open up scatterplot3d.R. Find the comment
## label tick marks
... and perhaps decide whether you need to use `text` rather than `mtext`.
(`text` can rotate by any amount,
but may need "xpd" to be set TRUE. `mtext` is limited to 90 degree increments.)
I've used up my time, so the next move is yours.
--
David.
>
> Olivier.
>
> On Mon, 30 Oct 2017
> 23:56:02 + Alex Restrepo wrote:
>
>> Hi,
>>
>> I would like to rotate the x axis tick labels by 45 degrees. Using
>> the code below, could someone please provide an example? Many
>> Thanks In Advance, Alex
>>
>> library("scatterplot3d")
>> mydf=data.frame(rate=seq(158, 314)
>>,age=seq(1, 157)
>>,market_date=seq(as.Date("2000/1/1"), as.Date
>> ("2003/1/1"), by="7 days"))
>>
>> mydf$market_date=as.Date(mydf$market_date, format="%Y-%m-%d")
>>
>> scatterplot3d(mydf$market_date
>> ,mydf$rate
>> ,mydf$age
>> ,x.ticklabs = seq(as.Date("2000/1/1"), as.Date
>> ("2003/1/1"), by="330 days"))
>>
>>
>> [[alternative HTML version deleted]]
>>
>> __
>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html and provide commented,
>> minimal, self-contained, reproducible code.
>
>
> --
> Olivier Crouzet, PhD
> /Assistant Professor/
> @LLING - Laboratoire de Linguistique de Nantes
>UMR6310 CNRS / Université de Nantes
> /Guest Researcher/
> @UMCG (University Medical Center Groningen)
>ENT department
>Rijksuniversiteit Groningen
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
David Winsemius
Alameda, CA, USA
'Any technology distinguishable from magic is insufficiently advanced.'
-Gehm's Corollary to Clarke's Third Law
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Help with Nesting
How do i resolve this?
symbol <- c('RRR' ,'GGG')
for(i in seq_along(symbol)) {
dat <- Quandl("LLL/symbol[i]")
}
required solutionis a loop where Quandl is a function and it loops as flows,
Quandl("LLL/RRR")
Quandl("LLL/GGG")
__
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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Scatterplot3d :: Rotating x tick labels by x degrees
On 31.10.2017 00:56, Alex Restrepo wrote:
Hi,
I would like to rotate the x axis tick labels by 45 degrees. Using the code
below, could someone please provide an example? Many Thanks In Advance, Alex
45 degree rotation is not supported in base R graphics and scatterplot3d
uses that.
You can use par(las=2)
before your code and get them rrotated by 90 degrees, or you can add
them individually by
s3d <- scatterplot3d(
Afterwards you could try along trhese lines:
par(xpd=TRUE)
text(s3d$xyz.convert(desired positions of labels in 3D coordinate
system), labels, angle=45)
(untested)
Best,
Uwe Ligges
library("scatterplot3d")
mydf=data.frame(rate=seq(158, 314)
,age=seq(1, 157)
,market_date=seq(as.Date("2000/1/1"), as.Date("2003/1/1"), by="7
days"))
mydf$market_date=as.Date(mydf$market_date, format="%Y-%m-%d")
scatterplot3d(mydf$market_date
,mydf$rate
,mydf$age
,x.ticklabs = seq(as.Date("2000/1/1"), as.Date("2003/1/1"), by="330
days"))
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] convertTime package.
If you need a function (e.g. convertTime ) from a package (unknown?) then
you cannot simply instruct R to install the function.
e.g. if you give the command
> install.packages("convertTime")
you will get an error message like
"package 'convertTime' is not available (for R version 3.4.1)"
I did a Google search and found a package called SGP that has a function
"convertTime". I have no idea if it is the function you are looking for but
installing that package worked fine in R version 3.4.1. So you can try
> install.packages("SGP")
HTH,
Eric
On Tue, Oct 31, 2017 at 9:15 PM, Sarah Goslee
wrote:
> Hi Scott,
>
> Where did you get this function originally? I can't find anything about it.
>
> What OS are you using?
>
> What says, "not available for the version"? Where are you getting that
> error?
>
> What are you trying to accomplish? What does that function actually
> do? It's impossible to suggest a work-around for a function of unknown
> purpose and origin.
>
> (The posting guide for this list suggests you include all of that
> information when you inquire.)
>
> Sarah
>
>
> On Tue, Oct 31, 2017 at 2:04 PM, Scott Anderwald via R-help
> wrote:
> > To whom it might concern. I am working on a project that needs the
> convertTime function. I am currently using version 3.4.1 and it says not
> available for the version. Two questions is there a work around for the
> function or is there another package that contains that functions.
> >
> >
> > Thanks,
> >
> >
> > Scott Anderwald
>
>
>
> --
> Sarah Goslee
> http://www.functionaldiversity.org
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] convertTime package.
Hi Scott, Where did you get this function originally? I can't find anything about it. What OS are you using? What says, "not available for the version"? Where are you getting that error? What are you trying to accomplish? What does that function actually do? It's impossible to suggest a work-around for a function of unknown purpose and origin. (The posting guide for this list suggests you include all of that information when you inquire.) Sarah On Tue, Oct 31, 2017 at 2:04 PM, Scott Anderwald via R-help wrote: > To whom it might concern. I am working on a project that needs the > convertTime function. I am currently using version 3.4.1 and it says not > available for the version. Two questions is there a work around for the > function or is there another package that contains that functions. > > > Thanks, > > > Scott Anderwald -- Sarah Goslee http://www.functionaldiversity.org __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] run r script in r-fiddle
Dear List, According to datacamp support team, r-fiddle.org is not supported. We asked them to put it down as Professor Maechler suggested it is a waste of time for the R-help to respond to questions on something not maintained and severely outdated. If you would like to use R from your browser, you can embed the following into a web page: https://cdn.datacamp.com/datacamp-light-latest.min.js";> Currently, it supports R 3.4.0. See the code base, which is open source, here https://github.com/datacamp/datacamp-light Hope it helps. Best, Mehmet On 31 October 2017 at 15:09, Suzen, Mehmet wrote: > On 31 October 2017 at 12:42, Martin Maechler > wrote: >> Notably as I think it's been provided by a company that no >> longer exists under that name, and even if that'd be wrong, R-Fiddle >> does not seem free software (apart from the R parts, I hope !). > > For the record, r-fiddle is maintained by datacamp: > https://www.datacamp.com/community/blog/r-fiddle-an-online-playground-for-r-code-2 __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] convertTime package.
To whom it might concern. I am working on a project that needs the convertTime function. I am currently using version 3.4.1 and it says not available for the version. Two questions is there a work around for the function or is there another package that contains that functions. Thanks, Scott Anderwald __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] error to run this package
Dear John and Anima, I didn't reply earlier because other people got to it before I did and because, given the lack of information in the original post, there wasn't anything to add. The car package shouldn't require anything near 2.5 Gb to load. Here's what I get under Windows 10 with R 3.4.2: > memory.size() [1] 62.08 > library(car) > memory.size() [1] 166.09 The units are MB (the ?memory.size help page says "Mb" but I believe that's usually for "megabits" and that it isn't what's intended). Some more information, as has been suggested by other posters, might help. Best, John - John Fox, Professor Emeritus McMaster University Hamilton, Ontario, Canada Web: socserv.mcmaster.ca/jfox > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of John Kane > via R-help > Sent: Tuesday, October 31, 2017 10:46 AM > To: r-help@r-project.org; Anima Pramanik > Subject: Re: [R] error to run this package > > Since we don't know what you were doing when this happened it is a bit > difficult to guess. > Please supply a minimal set of code that demonstrates what you were doing > that gives this error. > The output of sessionInfo() would also be useful. > Have a look at http://stackoverflow.com/questions/5963269/how-to-make-a- > great-r-reproducible-example > or > Reproducibility · Advanced R.for some idea of the type of information that > would useful. > The simplist solution might be to make sure that you have enough memory > available since the error says, "cannot allocate memory block of size 2.5 Gb". > > > | > | > | | > Reproducibility · Advanced R. > > > | > > | > > | > > > > > > On Tuesday, October 31, 2017, 9:07:04 AM EDT, Anima Pramanik > wrote: > > Error: package or namespace load failed for ‘car’ in get(Info[i, 1], envir > = env): > cannot allocate memory block of size 2.5 Gb > > > please help me to get a solution of this problem > > [[alternative HTML version deleted]] > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting- > guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting- > guide.html > and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Pass Parameters to RScript?
Hello Morcus, Is your question really about language inter-operability? If so, have you checked out rJava? "rJava: Low-Level R to Java Interface" https://CRAN.R-project.org/package=rJava http://www.rforge.net/rJava/ Regards, Bill. W. Michels, Ph.D. On Mon, Oct 30, 2017 at 8:10 AM, Morkus via R-help wrote: > Thanks Eric, > > I saw that page, too, but it states: > > "This post describes how to pass external arguments to R when calling a > Rscript with a command line." > > Not what I'm trying to do. > > Thanks for your reply. > > Sent from [ProtonMail](https://protonmail.com), Swiss-based encrypted email. > >> Original Message >> Subject: Re: [R] Pass Parameters to RScript? >> Local Time: October 30, 2017 9:39 AM >> UTC Time: October 30, 2017 1:39 PM >> From: ericjber...@gmail.com >> To: Morkus >> r-help@r-project.org >> >> I did a simple search and got hits immediately, e.g. >> https://www.r-bloggers.com/passing-arguments-to-an-r-script-from-command-lines/ >> >> On Mon, Oct 30, 2017 at 2:30 PM, Morkus via R-help >> wrote: >> >>> Is it possible to pass parameters to an R Script, say, from Java or other >>> language? >>> >>> I did some searches, but came up blank. >>> >>> Thanks very much in advance, >>> >>> Sent from [ProtonMail](https://protonmail.com), Swiss-based encrypted email. >>> [[alternative HTML version deleted]] >>> >>> __ >>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html >>> and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] error to run this package
Since we don't know what you were doing when this happened it is a bit difficult to guess. Please supply a minimal set of code that demonstrates what you were doing that gives this error. The output of sessionInfo() would also be useful. Have a look at http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example or Reproducibility · Advanced R.for some idea of the type of information that would useful. The simplist solution might be to make sure that you have enough memory available since the error says, "cannot allocate memory block of size 2.5 Gb". | | | | Reproducibility · Advanced R. | | | On Tuesday, October 31, 2017, 9:07:04 AM EDT, Anima Pramanik wrote: Error: package or namespace load failed for ‘car’ in get(Info[i, 1], envir = env): cannot allocate memory block of size 2.5 Gb please help me to get a solution of this problem [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] error to run this package
Cc'ing back to the list... ALWAYS reply-to-all to keep the list included... I
don't know all the answers and I don't reply to every request since this is
volunteer time on my part.
That error does not occur when I load that package. Please re-read my previous
recommendations and follow all of them... maybe someone else will notice
something.
--
Sent from my phone. Please excuse my brevity.
On October 31, 2017 9:01:51 AM PDT, Anima Pramanik
wrote:
>library("car", lib.loc="~/R/win-library/3.4")
>Error: package or namespace load failed for ‘car’ in get(Info[i, 1],
>envir
>= env):
> cannot allocate memory block of size 2.5 Gb
>
>On Tue, Oct 31, 2017 at 8:50 PM, Jeff Newmiller
>
>wrote:
>
>> Please read the Posting Guide mentioned at the bottom of this and
>every
>> message on this list. Things like the following you should consider:
>>
>> What did you do between the time you started R and this error
>occurred?
>> There is a presumption that we can reproduce your actions and perhaps
>get
>> the same result.
>>
>> What is the output of sessionInfo() just before this error occurs?
>>
>> Send your email in plain text, since html gets mangled frequently
>before
>> we see your message.
>> --
>> Sent from my phone. Please excuse my brevity.
>>
>> On October 31, 2017 5:41:36 AM PDT, Anima Pramanik
>
>> wrote:
>> >Error: package or namespace load failed for ‘car’ in get(Info[i, 1],
>> >envir
>> >= env):
>> > cannot allocate memory block of size 2.5 Gb
>> >
>> >
>> >please help me to get a solution of this problem
>> >
>> > [[alternative HTML version deleted]]
>> >
>> >__
>> >R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> >https://stat.ethz.ch/mailman/listinfo/r-help
>> >PLEASE do read the posting guide
>> >http://www.R-project.org/posting-guide.html
>> >and provide commented, minimal, self-contained, reproducible code.
>>
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Scatterplot3d :: Rotating x tick labels by x degrees
Hi Alex,
this should be related to the "las" argument of "par()" but
actually it does not seem to be parametered in scatterplot3d.
Searching the net for "scatterplot3d las" provides a link to:
https://stackoverflow.com/questions/25458652/specifying-the-orientation-of-the-axes-labels-in-scatterplot3d
You may try the solution that is provided in this link or consider using
alternate packages (like rgl or the plotly packages which one may be
more powerfull as far as I can judge). However I can't help more. It
seems ggplot does not produce 3d plots (but it looks like it can
interact with plotly when using 3d plots).
Olivier.
On Mon, 30 Oct 2017
23:56:02 + Alex Restrepo wrote:
> Hi,
>
> I would like to rotate the x axis tick labels by 45 degrees. Using
> the code below, could someone please provide an example? Many
> Thanks In Advance, Alex
>
> library("scatterplot3d")
> mydf=data.frame(rate=seq(158, 314)
> ,age=seq(1, 157)
> ,market_date=seq(as.Date("2000/1/1"), as.Date
> ("2003/1/1"), by="7 days"))
>
> mydf$market_date=as.Date(mydf$market_date, format="%Y-%m-%d")
>
> scatterplot3d(mydf$market_date
> ,mydf$rate
> ,mydf$age
> ,x.ticklabs = seq(as.Date("2000/1/1"), as.Date
> ("2003/1/1"), by="330 days"))
>
>
> [[alternative HTML version deleted]]
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html and provide commented,
> minimal, self-contained, reproducible code.
--
Olivier Crouzet, PhD
/Assistant Professor/
@LLING - Laboratoire de Linguistique de Nantes
UMR6310 CNRS / Université de Nantes
/Guest Researcher/
@UMCG (University Medical Center Groningen)
ENT department
Rijksuniversiteit Groningen
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] SamplingStrata R package
If yours is primarily a statistics issue (I can't tell), you might do better posting on a statistics list like stats.stackexchange.com. -- Bert On Tue, Oct 31, 2017 at 8:15 AM, Chris S wrote: > Hi Bert > thank you for the reply. Not a coding query as such. Just wanted some > pointers towards how to handle strata using the package in my situation, > i.e. business type X business size with information for count and financial > turnover. > > many thanks > > On 31 October 2017 at 14:37, Bert Gunter wrote: > >> 1. There is no question here. >> >> 2. In any case, this is not a code writing service, so a question about >> how to code models without any offering of your own attempts might not be >> replied to anyway. >> >> 3. For what sorts of queries you might expect replies to, please read and >> follow the posting guide below. Also, if you do post, please post in plaint >> text, not html, as the latter (especially code) can get mangled by the mail >> server. >> >> Cheers, >> Bert >> >> >> >> >> Bert Gunter >> >> "The trouble with having an open mind is that people keep coming along >> and sticking things into it." >> -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) >> >> On Tue, Oct 31, 2017 at 4:43 AM, Chris S wrote: >> >>> Hi all >>> >>> I am hoping to use the SamplingStrata R package for a dataset describing >>> a >>> population of businesses wherein I have information on the type of >>> business, as well as, for designated employment number bands, number of >>> employees and business turnover information. So in this context the >>> employment number bands can be described as micro, small, medium and >>> large, >>> i.e. size of business. Hence I would like the stratification to be >>> business >>> type X business size. I note that SamplingStrata allows for multivariate >>> scenarios and the data frame should be straightforward to set up, but in >>> terms of "domains" which descriptor should be used for this? I am >>> assuming >>> I can use both number of employees and business turnover information to >>> optimise the stratification sampling procedure. >>> >>> thank you in advance >>> >>> [[alternative HTML version deleted]] >>> >>> __ >>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >>> https://stat.ethz.ch/mailman/listinfo/r-help >>> PLEASE do read the posting guide http://www.R-project.org/posti >>> ng-guide.html >>> and provide commented, minimal, self-contained, reproducible code. >>> >> >> > [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] error to run this package
Please read the Posting Guide mentioned at the bottom of this and every message on this list. Things like the following you should consider: What did you do between the time you started R and this error occurred? There is a presumption that we can reproduce your actions and perhaps get the same result. What is the output of sessionInfo() just before this error occurs? Send your email in plain text, since html gets mangled frequently before we see your message. -- Sent from my phone. Please excuse my brevity. On October 31, 2017 5:41:36 AM PDT, Anima Pramanik wrote: >Error: package or namespace load failed for ‘car’ in get(Info[i, 1], >envir >= env): > cannot allocate memory block of size 2.5 Gb > > >please help me to get a solution of this problem > > [[alternative HTML version deleted]] > >__ >R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >https://stat.ethz.ch/mailman/listinfo/r-help >PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] SamplingStrata R package
Hi Bert thank you for the reply. Not a coding query as such. Just wanted some pointers towards how to handle strata using the package in my situation, i.e. business type X business size with information for count and financial turnover. many thanks On 31 October 2017 at 14:37, Bert Gunter wrote: > 1. There is no question here. > > 2. In any case, this is not a code writing service, so a question about > how to code models without any offering of your own attempts might not be > replied to anyway. > > 3. For what sorts of queries you might expect replies to, please read and > follow the posting guide below. Also, if you do post, please post in plaint > text, not html, as the latter (especially code) can get mangled by the mail > server. > > Cheers, > Bert > > > > > Bert Gunter > > "The trouble with having an open mind is that people keep coming along and > sticking things into it." > -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) > > On Tue, Oct 31, 2017 at 4:43 AM, Chris S wrote: > >> Hi all >> >> I am hoping to use the SamplingStrata R package for a dataset describing a >> population of businesses wherein I have information on the type of >> business, as well as, for designated employment number bands, number of >> employees and business turnover information. So in this context the >> employment number bands can be described as micro, small, medium and >> large, >> i.e. size of business. Hence I would like the stratification to be >> business >> type X business size. I note that SamplingStrata allows for multivariate >> scenarios and the data frame should be straightforward to set up, but in >> terms of "domains" which descriptor should be used for this? I am assuming >> I can use both number of employees and business turnover information to >> optimise the stratification sampling procedure. >> >> thank you in advance >> >> [[alternative HTML version deleted]] >> >> __ >> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posti >> ng-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] run r script in r-fiddle
Try that source statement here -- it is running R 3.4.1: https://www.tutorialspoint.com/execute_r_online.php On Mon, Oct 30, 2017 at 11:14 AM, Suzen, Mehmet wrote: > Note that, looks like r-fiddle runs R 3.1.2. > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. -- Statistics & Software Consulting GKX Group, GKX Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] SamplingStrata R package
1. There is no question here. 2. In any case, this is not a code writing service, so a question about how to code models without any offering of your own attempts might not be replied to anyway. 3. For what sorts of queries you might expect replies to, please read and follow the posting guide below. Also, if you do post, please post in plaint text, not html, as the latter (especially code) can get mangled by the mail server. Cheers, Bert Bert Gunter "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Tue, Oct 31, 2017 at 4:43 AM, Chris S wrote: > Hi all > > I am hoping to use the SamplingStrata R package for a dataset describing a > population of businesses wherein I have information on the type of > business, as well as, for designated employment number bands, number of > employees and business turnover information. So in this context the > employment number bands can be described as micro, small, medium and large, > i.e. size of business. Hence I would like the stratification to be business > type X business size. I note that SamplingStrata allows for multivariate > scenarios and the data frame should be straightforward to set up, but in > terms of "domains" which descriptor should be used for this? I am assuming > I can use both number of employees and business turnover information to > optimise the stratification sampling procedure. > > thank you in advance > > [[alternative HTML version deleted]] > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/ > posting-guide.html > and provide commented, minimal, self-contained, reproducible code. > [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] run r script in r-fiddle
On 31 October 2017 at 12:42, Martin Maechler wrote: > Notably as I think it's been provided by a company that no > longer exists under that name, and even if that'd be wrong, R-Fiddle > does not seem free software (apart from the R parts, I hope !). For the record, r-fiddle is maintained by datacamp: https://www.datacamp.com/community/blog/r-fiddle-an-online-playground-for-r-code-2 __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] error to run this package
Error: package or namespace load failed for ‘car’ in get(Info[i, 1], envir = env): cannot allocate memory block of size 2.5 Gb please help me to get a solution of this problem [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] SamplingStrata R package
Hi all I am hoping to use the SamplingStrata R package for a dataset describing a population of businesses wherein I have information on the type of business, as well as, for designated employment number bands, number of employees and business turnover information. So in this context the employment number bands can be described as micro, small, medium and large, i.e. size of business. Hence I would like the stratification to be business type X business size. I note that SamplingStrata allows for multivariate scenarios and the data frame should be straightforward to set up, but in terms of "domains" which descriptor should be used for this? I am assuming I can use both number of employees and business turnover information to optimise the stratification sampling procedure. thank you in advance [[alternative HTML version deleted]] __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] run r script in r-fiddle
> Suzen, Mehmet
> on Mon, 30 Oct 2017 16:05:18 +0100 writes:
> We were talking about r-fiddle. It gives error there [*],
> that's why I suggested using RCurl.
>>
source("https://raw.githubusercontent.com/msuzen/isingLenzMC/master/R/isingUtils.R";)
> ... unsupported URL scheme Error : cannot open the
> connection
>>
and later you note that it seems to run R-3.1.2 --- which is
ridiculously outdated.
I think R-help should not be (mis)used at all to talk about
R-Fiddle, then.
Notably as I think it's been provided by a company that no
longer exists under that name, and even if that'd be wrong, R-Fiddle
does not seem free software (apart from the R parts, I hope !).
If another asked about his/her problems using R 3.1.2, I think
we would all tell him to go away and install a current version
of R, and not waste any more bandwidth and R-help readers' time,
wouldn't we ?
> On 30 October 2017 at 15:51, Martin Maechler
> wrote:
>>> Suzen, Mehmet on Mon, 30 Oct 2017
>>> 11:16:30 +0100 writes:
>>
>> > Hi Frank, You could upload your R source file to a
>> public > URL, for example to github and read via RCurl,
>> as source > do not support https as far as I know.
>>
>> well... but your knowledge is severely (:-) outdated.
>> Why did you not try first?
>>
>>
source("https://raw.githubusercontent.com/msuzen/isingLenzMC/master/R/isingUtils.R";)
>>
>> works for me even in R 3.3.0 which is really outdated
>> itself!
__
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[R] Course in Lisbon: Introduction to Linear Mixed Effects Models and GLMM with R
We would like to announce the following statistics course: Course: Introduction to Linear Mixed Effects Models and GLMM with R Where: Lisbon, Portugal When: 19-23 February 2018 Course website: http://highstat.com/index.php/courses Course flyer: http://highstat.com/Courses/Flyers/2018/Flyer2018_02LisbonV2.pdf Kind regards, Alain Zuur -- Dr. Alain F. Zuur Highland Statistics Ltd. 9 St Clair Wynd AB41 6DZ Newburgh, UK Email: highs...@highstat.com URL: www.highstat.com And: NIOZ Royal Netherlands Institute for Sea Research, Department of Coastal Systems, and Utrecht University, P.O. Box 59, 1790 AB Den Burg, Texel, The Netherlands Author of: 1. Beginner's Guide to Spatial, Temporal and Spatial-Temporal Ecological Data Analysis with R-INLA. (2017). 2. Beginner's Guide to Zero-Inflated Models with R (2016). 3. Beginner's Guide to Data Exploration and Visualisation with R (2015). 4. Beginner's Guide to GAMM with R (2014). 5. Beginner's Guide to GLM and GLMM with R (2013). 6. Beginner's Guide to GAM with R (2012). 7. Zero Inflated Models and GLMM with R (2012). 8. A Beginner's Guide to R (2009). 9. Mixed effects models and extensions in ecology with R (2009). 10. Analysing Ecological Data (2007). __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Final models from caret's train function
Using caret on the Titanic data from Kaggle, I tried various models,
including rfRules which produces a model, partly described as such:
> caret.rfRules.cv$finalModel
$model
len freq err
[1,] "2" "0.0368" "0"
[2,] "2" "0.032" "0.05"
[3,] "2" "0.1824" "0.0526315789473685"
[4,] "4" "0.0656" "0.0975609756097561"
[5,] "4" "0.0304" "0.105263157894737"
[6,] "3" "0.4384" "0.105839416058394"
[7,] "3" "0.0112" "0.142857142857143"
[8,] "4" "0.0256" "0.1875"
[9,] "3" "0.1088" "0.279411764705882"
[10,] "3" "0.056" "0.342857142857143"
[11,] "1" "0.0128" "0.25"
condition pred
[1,] "X[,4]<=7 & X[,11]<=4.5""1"
[2,] "X[,7]<=31.33125 & X[,11]>4.5" "0"
[3,] "X[,2]<=0.5 & X[,3]<=0.5" "1"
[4,] "X[,2]>0.5 & X[,4]<=30.5 & X[,5]>0.5 & X[,9]>0.5" "0"
[5,] "X[,3]<=0.5 & X[,4]<=30.2031919426199 & X[,4]>21.5 & X[,9]<=0.5""1"
[6,] "X[,3]>0.5 & X[,4]>9.5 & X[,7]<=26.26875" "0"
[7,] "X[,2]>0.5 & X[,7]>13.90835 & X[,7]<=15.3729" "0"
[8,] "X[,4]<=40.8653667208804 & X[,4]>25 & X[,7]>26.14375 & X[,11]<=1.5" "1"
[9,] "X[,3]>0.5 & X[,4]>8.16718191075288 & X[,4]<=77""0"
[10,] "X[,3]<=0.5 & X[,4]<=38.5 & X[,4]>12.5" "1"
[11,] "X[,1]==X[,1]" "0"
[...]
Does that 11th row make sense? X[,1]==X[,1] will always be true, so
is that saying anything? Or is it a case of a model for prediction
being useless for inference?
> version
_
platform x86_64-pc-linux-gnu
arch x86_64
os linux-gnu
system x86_64, linux-gnu
status
major 3
minor 4.1
year 2017
month 06
day30
svn rev72865
language R
version.string R version 3.4.1 (2017-06-30)
nickname Single Candle
--
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
___Patrick Connolly
{~._.~} Great minds discuss ideas
_( Y )_ Average minds discuss events
(:_~*~_:) Small minds discuss people
(_)-(_) . Eleanor Roosevelt
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
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