Re: [R] fftImg() error: fftw_access_func

2016-03-30 Thread Eric Handler
Took me a few days to get a reply from the student. The code he is running is:

library(ripa)

img<-readJPEG( "arthurs-seat.jpg" )
hist(fftImg(img))

I see the same error as the student on many systems. When I run
require(ripa) on the machine I mentioned before:

> require('ripa')
Loading required package: ripa
Loading required package: tcltk
Loading required package: parallel

>img<-readJPEG( "arthurs-seat.jpg" )
>hist(fftImg(img))
Error in .C("fftw_access_func", as.complex(img), as.integer(w),
as.integer(h),  :
  "fftw_access_func" not available for .C() for package "ripa"

If I should take the conversation off of r-help as I loop in the
package maintainer, please let me know.

Thanks,
Eric

--
Eric Handler
Academic Information Associate - Science Division
Macalester College - Saint Paul, MN
Olin-Rice 124
Office: 651-696-6016
View my calendar: http://goo.gl/SbxLOu

On Sat, Mar 26, 2016 at 2:23 PM, David Winsemius <dwinsem...@comcast.net> wrote:
>
>> On Mar 26, 2016, at 8:42 AM, Shelby Leonard via R-help 
>> <r-help@r-project.org> wrote:
>>
>> So do i need to resend the email to someone else? sorry i am just confused
>
> Perhaps.
>
> The code needed to find the maintainer is at the end of this scrape of a 
> console "dialog" and scroll to the bottom if you want the proper address for 
> reporting problems with package:ripa,
>
>  but _first_ you should be checking to see if you have all the system 
> dependencies:
>
>
>> require(ripa)
> Loading required package: ripa
> Loading required package: tcltk
> Loading required package: parallel
>
> Attaching package: ‘ripa’
>
> The following object is masked from ‘package:rms’:
>
> contrast
>
> The following object is masked from ‘package:Hmisc’:
>
> zoom
>
>> packageDescription("ripa")
> Package: ripa
> Version: 2.0-2
> Date: 2014-05-29
> Title: R Image Processing and Analysis
> Authors@R: c(person("Talita", "Perciano", role = c("aut", "cre"),
>email = "talitaperci...@gmail.com"), person("Alejandro", "C
>Frery", role = "ctb", email = "acfr...@pq.cnpq.br"))
> Maintainer: Talita Perciano <talitaperci...@gmail.com>
> Depends: R (>= 2.8.1), tcltk, parallel
> Suggests: e1071, rggobi, reshape, methods, jpeg, png, tkrplot,
>fftw, foreach, doSNOW
> Enhances: doMC
> SystemRequirements: BWidget, Tktable, Img, libjpeg
>
> # 
> # My guess is that you do not have all of the systemRequirements on this 
> machine.
> # Or if you do, then perhaps they are not in a directory in which the package 
> expects to find them.
> # =
>
> Description: A package including various functions for image
>processing and analysis. With this package is possible to
>process and analyse RGB, LAN (multispectral) and AVIRIS
>(hyperspectral) images. This packages also provides
>functions for reading JPEG files, extracted from the
>archived 'rimage' package.
> License: GPL (>= 2) | file LICENSE
> Imports: Rcpp (>= 0.11.0)
> LinkingTo: Rcpp
> URL: http://www.r-project.org
> Packaged: 2014-05-30 20:18:57 UTC; Talita Perciano
> Author: Talita Perciano [aut, cre], Alejandro C Frery [ctb]
> NeedsCompilation: yes
> Repository: CRAN
> Date/Publication: 2014-05-31 01:32:57
> Built: R 3.2.0; x86_64-apple-darwin13.4.0; 2015-04-21 02:07:55
>UTC; unix
>
> -- File: 
> /Library/Frameworks/R.framework/Versions/3.2/Resources/library/ripa/Meta/package.rds
>> ? fftImg
>>   data(logo)
>>   plot(normalize(fftImg(logo)))
> Error in .C("fftw_access_func", as.complex(img), as.integer(w), 
> as.integer(h),  :
>   "fftw_access_func" not available for .C() for package "ripa"
>
>> require(fftw)
> Loading required package: fftw
>
> # Tried that thinking (Incorrectly) the missing routine might be supplied in 
> that package.
>
>> data(logo)
>>   plot(normalize(fftImg(logo)))
> Error in .C("fftw_access_func", as.complex(img), as.integer(w), 
> as.integer(h),  :
>   "fftw_access_func" not available for .C() for package "ripa"
>> maintainer('ripa')
> [1] "Talita Perciano <talitaperci...@gmail.com>"
>
> --
>
> David
>
>
>>
>>On Saturday, March 26, 2016 9:21 AM, John Kane <jrkrid...@inbox.com> 
>> wrote:
>>
>>
>> It would be helpful if you actually supplied your code and a minimal data 
>> set to for people to examine.
>>
>> Please have a look at 
>> http:/

[R] fftImg() error: fftw_access_func

2016-03-25 Thread Eric Handler
Hello-

My name is Eric Handler and I am an academic technologist supporting
the Science Division(7 academic departments) at Macalester College in
Saint Paul, MN. The faculty use R for a variety of teaching and
research tasks around campus. I administer our RStudio instance and
have encountered an error I can't resolve. A student working on an
independent research project has reported that he received the
following error when attempting to use the ripa function fftImg():

Error in .C("fftw_access_func", as.complex(img), as.integer(w),
as.integer(h),  :
  "fftw_access_func" not available for .C() for package "ripa"

I've been able to recreate this error in RStudio as well as directly
in R. I've also recreated the error across different platforms(Ubuntu,
Mac OS X 10.10 and 10.11). My test platform's sessionInfo() output is
below:

R version 3.2.3 (2015-12-10)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.11.3 (El Capitan)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] parallel  tcltk stats graphics  grDevices utils datasets
[8] methods   base

other attached packages:
[1] fftw_1.0-3 ripa_2.0-2

loaded via a namespace (and not attached):
[1] tools_3.2.3 Rcpp_0.12.3

A google search for "fftw_access_func" doesn't reveal anything modern
on this topic, only mentions of OS 10.4 and 10.5 and rimage, which
doesn't seem to exist anymore(perhaps it was a predecessor to RIPA?)

Can someone help me get the student functional with fftImg() or
alternately, tell me it is a known issue and an alternative option(if
available) for the student?

Thanks,
Eric

--
Eric Handler
Academic Information Associate - Science Division
Macalester College - Saint Paul, MN
Olin-Rice 124
Office: 651-696-6016
View my calendar: http://goo.gl/SbxLOu

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