Re: [R] Writing to a file
Thank you a lot for answering so fast! but..what do you mean by example? I 've mentioned above the loop I used and I also show how the file looks like 'cause its huge. the way i read the file is x=read.table(filename.txt,header=FALSE,sep=\t,fill=TRUE) y=x[1:45,] (i use only some rows in order to test if it works ) -- View this message in context: http://r.789695.n4.nabble.com/Writing-to-a-file-tp3070617p4364034.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Writing to a file
Thanks a lot for the interest :)
My loop is the following
counter = 0
for (i in 1:nrow(y))
{
for (j in 1:ncol(y))
{
if (y[i,j]==Func_0005634) {
counter = counter + 1 }
if(y[i,j]==Func_0005737){
counter = counter + 1 }
if(y[i,j]==Func_0005515){
counter = counter + 1 }
}
if(counter == 3 ){
cat(y[i,1], file = foo.csv, \n)
}
counter = 0
}
and after read.table(foo.csv)
I get
V1
1 45
which is the last result
why does it overwrite? how can I have all the results?
Eager to a reply from you!
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Re: [R] Writing to a file
Dear All!!
I am also new in R
and trying to write my results into a file I post here..hopefully is the
proper place
To be more secific I have this loop
counter = 0
for (i in 1:nrow(y))
{
for (j in 1:ncol(y))
{
if (y[i,j]==Func_0005634) {
counter = counter + 1 }
if(y[i,j]==Func_0005737){
counter = counter + 1 }
if(y[i,j]==Func_0005515){
counter = counter + 1 }
}
if(counter == 2) {
k-structure(list(print(y[i,1])), class = data.frame)
}
if(counter == 3 ){
l-structure(list(print(y[i,1])), class = data.frame)
}
counter = 0
}
for counter==2 or counter ==3
I want to get print(y[i,1])
where in column 1 exists the name of the protein
whereas in the rest columns exist somewhere randomly the strings im looking
for
I want to get the names of the proteins in a file and those that have either
2 or 3 functions be named as cancer.
the specific part of code gives me as a result in the command line this (is
a sample cause im working on 8500lines)
[1] Prot_10035
8527 Levels: Prot_0 Prot_1 Prot_10 Prot_100 Prot_1000 Prot_1 ...
Prot_9996
[1] Prot_10041
8527 Levels: Prot_0 Prot_1 Prot_10 Prot_100 Prot_1000 Prot_1 ...
Prot_9996
[1] Prot_10045
8527 Levels: Prot_0 Prot_1 Prot_10 Prot_100 Prot_1000 Prot_1 ...
Prot_9996
which is fine i can see the names of the proteins but i cant use them so to
label them
When I try to write it in a file ..then is kept only the last result because
unfortunatelly
he overwrites himself :(
How can I use those data? How can I write them in a file and add as an extra
column the word cancel
for those containing the specific functions?
Any hint you may give me it would be more than helpful for me!
Thank you a lot in advance!
Looking forward to your reply :)
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Re: [R] Writing to a file
maybe I could keep each line (having the strings) in a file or somewhere and then call a print function that prints them all together from where I saved them? Please let me know as soon as Possible!! thank you! -- View this message in context: http://r.789695.n4.nabble.com/Writing-to-a-file-tp3070617p4362340.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Writing to a file
Honestly thank you for the prompt responding and you are right I will tellyou what I want to do and not the way ..since I dont know much from R I have a txt with Proteins Prot_10035Func_0005874 Func_0016787 Func_0003774 Func_0006898 Func_0005856 Func_0005525 Func_0005737 Func_0003924 Func_0005515 Func_166 Prot_10036Func_0005739 Func_0003735 Func_0006412 Func_0005763 Func_0005840 Prot_10037Func_0005739 Func_0005515 Prot_10039Func_0005576 Func_0009615 Func_0050832 Func_0005615 Func_0006955 Func_0042742 Func_0031640 Func_0006935 Prot_1004
