*I'm sorry, in some way I didn't see I was in the wrong directory. *
*The real error message is the following:*
hdf5_global_verbosity=3 load=1
Processing object: DNS .. which is a Group
Processing object: BEAM .. its a dataset...Dataset has ID83886084
Dataset has tid 50331968
Dataset has space id 67108870
Dataset has rank 2
Dataset has dims/maxdims: 4720 3184 / -1 -1
Allocating matrix with rank=2 dim=4720 0
calling vector_io. Hangs here with big datsets
Errore in hdf5load(RM-2007-GRAD-2048.St0.0.h5, verbosity = 3) :
Can't get type for R type: 19 (IO)
2013/2/4 Flavio Pons flavio.p...@gmail.com
*Hi everyone, I am a new subscriber, so I hope I'm posting in the right
way.
I need to load a hdf5 file, so I installed the hdf5 libraries ad the hdf5
R package; in downloaded a small sample file from the hdf5 website and I
could correctly load it. But when I try to load my file:
*
require(hdf5)
rm(list=ls())
ls()
hdf5load(my_file.h5, verbosity=3)
*I get this error message:
*
Errore in hdf5load(my_file.h5, verbosity = 1) : unable to open HDF file:
my_file.h5
HDF5-DIAG: Error detected in HDF5 (1.8.4-patch1) thread 0:
#000: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1514 in H5Fopen():
unable to open file
major: File accessability
minor: Unable to open file
#001: /Builds/unix/hdf5-1.8.4-patch1/src/H5F.c line 1218 in H5F_open():
unable to open file
major: File accessability
minor: Unable to open file
#002: /Builds/unix/hdf5-1.8.4-patch1/src/H5FD.c line 1079 in
H5FD_open(): open failed
major: Virtual File Layer
minor: Unable to initialize object
#003: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
H5FD_sec2_open(): unable to open file
major: File accessability
minor: Unable to open file
#004: /Builds/unix/hdf5-1.8.4-patch1/src/H5FDsec2.c line 365 in
H5FD_sec2_open(): No such file or directory
major: Internal error (too specific to document in detail)
minor: System error message
*I really can't see the problem. I get the same error both with OSX and
Ubuntu; could it simply be that the file is too large? In that case, what
could I try to do?
Thanks in advance,*
*
*
*Flavio*
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
