Sir,
I am a student in biostat and bioinformatics. I am interested to use R for my
research work related to codon usage analysis.This software was used in a
publication entitled " Online synonymous codon usage analyses with the ade4 and
seqinR packages" and a weblink
http://pbil.univ-lyon1.fr/datasets/charif04/ was given for readers to use the
program. Now I would like to use the webpage for codon usage analysis for my
selected genome.However, the program is not working for any other genome other
than its default data set.I can filter the genome to keep only sequences more
than 300bp in a text file in fasta formata and I would like to run the
program/weblink for this file.
Could you please let me know, how to use the program for my dataset on the
weblink / a edited R script for running the program on R 2.14.2 for this set of
sequences.
Sincerely
Kinshuk Chandra Nayak
Institute of Life Sciences
Department of Biotechnology,Govt India
Bhubaneswar-751023,
India
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