[R] How-to add to LDA ggplot axes the Percentage of variance explained
Hi, How can I add to LDA ggplot axes the Percentages of variance explained? Script: /require(MASS) require(ggplot2) iris.lda-lda(Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width, data = iris) datPred-data.frame(Species=predict(iris.lda)$class,predict(iris.lda)$x) ggplot(datPred, aes(x=LD1, y=LD2, col=Species) ) + geom_point( size = 4, aes(color = Species)) / Thanks -- View this message in context: http://r.789695.n4.nabble.com/How-to-add-to-LDA-ggplot-axes-the-Percentage-of-variance-explained-tp4673603.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] LDA and confidence ellipse
Thanks again -- View this message in context: http://r.789695.n4.nabble.com/LDA-and-confidence-ellipse-tp4671308p4671427.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] LDA and confidence ellipse
Hi, I wish to add confidence ellipse on my LDA result of the iris data set. Therefore: Is there statistical logic to do that as I only wish it to make the species separation more visable? How can I add it to the script below (ggplot): require(MASS) require(ggplot2) iris.lda-lda(Species ~ Sepal.Length + Sepal.Width + Petal.Length + Petal.Width, data = iris) LD1-predict(iris.lda)$x[,1] LD2-predict(iris.lda)$x[,2] ggplot(iris, aes(x=LD1, y=LD2, col=iris$Species) ) + geom_point( size = 4, aes(color = iris$Species))+theme_bw() Could someone please help me. Thank you very much. -- View this message in context: http://r.789695.n4.nabble.com/LDA-and-confidence-ellipse-tp4671308.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] LDA and confidence ellipse
Hi, Thanks works like magic. BTW What is the confidence ellipses probability used? -- View this message in context: http://r.789695.n4.nabble.com/LDA-and-confidence-ellipse-tp4671308p4671357.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
