[R] Package Snow 0.3-5 hangs on windows 7
Good morning, I was using the packages snow 0.3-3 and snowfall 1.84 with R.10.1 : it is working great ! (Windows 7) Since I have tried to update my R version (Windows 7). I cannot make the packages snow and snowfall works for parallel processing. I have tried the following version combinations: Snowfall 1.84 snow 0.3-5 with R version 2.12.1 / 2.12.2 / 2.13.0 Snowfall 1.84 snow 0.3-3 with R version 2.13.0 With the following code Library(snow) Library(snowfall) sfInit(parallel=TRUE, cpus=7) and the system is hanging ... R-2.13.0 has been installed in folder C:/R/R.-2.13.0 (and not in folder c:/Program Files or C:/Programme on this computer) -- no symbolic link or blank space issue in path name. I have tried the code Sock.r (posted on the 16 May 2011 on this list by Uwe Ligges, although my guess is that it has been integrated in the version 0.3-5 of snow ...). Without success. On the command line (i.e. without RGui), trying first sfInit() (works fine ) and sfInit(parallel=TRUE, cpus=7), I got the following error message ... (R-2.13.0) sfInit() snowfall 1.84 initialized: sequential execution, one CPU. sfStop() sfInit(parallel=TRUE,cpus=7) Error in socketConnection(port = port, server = TRUE, blocking = TRUE, cannot open the connection In addition: Warning message: In socketConnection(port = port, server = TRUE, blocking = TRUE, : port 10187 cannot be opened Error in sfInit(parallel = TRUE, cpus = 7) : Starting of snow cluster failed! Error in socketConnection(port = po , : cannot open the connection Error in socketConnection(port = port, server = TRUE, blocking = TRUE cannot open the connection Any suggestions ? Thanks for any help, Valère __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Package Snow 0.3-5 hangs on windows 7 (follow-up)
Thank you Uwe ! R-2.13.0 patched did indeed solve my issue and the package snow is working again fine ... Best, Valère -Ursprüngliche Nachricht- Von: Uwe Ligges [mailto:lig...@statistik.tu-dortmund.de] Gesendet: Montag, 27. Juni 2011 11:47 An: Martin Valere Cc: r-help@r-project.org Betreff: Re: [R] Package Snow 0.3-5 hangs on windows 7 Please try R-2.13.0 patched with the most recent snow. We found a bug in R that has been fixed in the meantime. Best, Uwe Ligges On 27.06.2011 10:46, Martin Valere wrote: Good morning, I was using the packages snow 0.3-3 and snowfall 1.84 with R.10.1 : it is working great ! (Windows 7) Since I have tried to update my R version (Windows 7). I cannot make the packages snow and snowfall works for parallel processing. I have tried the following version combinations: Snowfall 1.84 snow 0.3-5 with R version 2.12.1 / 2.12.2 / 2.13.0 Snowfall 1.84 snow 0.3-3 with R version 2.13.0 With the following code Library(snow) Library(snowfall) sfInit(parallel=TRUE, cpus=7) and the system is hanging ... R-2.13.0 has been installed in folder C:/R/R.-2.13.0 (and not in folder c:/Program Files or C:/Programme on this computer) -- no symbolic link or blank space issue in path name. I have tried the code Sock.r (posted on the 16 May 2011 on this list by Uwe Ligges, although my guess is that it has been integrated in the version 0.3-5 of snow ...). Without success. On the command line (i.e. without RGui), trying first sfInit() (works fine ) and sfInit(parallel=TRUE, cpus=7), I got the following error message ... (R-2.13.0) sfInit() snowfall 1.84 initialized: sequential execution, one CPU. sfStop() sfInit(parallel=TRUE,cpus=7) Error in socketConnection(port = port, server = TRUE, blocking = TRUE, cannot open the connection In addition: Warning message: In socketConnection(port = port, server = TRUE, blocking = TRUE, : port 10187 cannot be opened Error in sfInit(parallel = TRUE, cpus = 7) : Starting of snow cluster failed! Error in socketConnection(port = po , : cannot open the connection Error in socketConnection(port = port, server = TRUE, blocking = TRUE cannot open the connection Any suggestions ? Thanks for any help, Valère __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] : Followup Error in library(gplots) : there is no package called 'gplots' : 64bits
Dear James and everybody interested, James'idea was correct : the problem was related to the 64bits version of R. Trying on the same computer a 32bits version of R did not produce this 'gplots' error (but many other conflicts linked to 64 / 32 bits) when installing RODBC package. I will install a 32 Linux version in parallel ... Valère -Ursprüngliche Nachricht- Von: Martin Valere Gesendet: Freitag, 16. April 2010 12:13 An: 'r-help@R-project.org' Betreff: AW: [SPAM] Re: [R] Error in library(gplots) : there is no package called 'gplots' Dear James, i have tried to install the package RODBC1-3.1 with R version 2.9.0 and 2.10.1 (using Opensuse 11.1, 64bits). I have tried install.packages locally (package downloaded and stored locally on the computer) or directly from Internet (using different mirrors !). Same results each time ... Same outcome either if I try to install other packages like for instance e1071. So it appears this is not linked to the package itself but rather with R-base or R-devel (both are installed) ... Regards, Valère -Ursprüngliche Nachricht- Von: james [mailto:ja...@ipec.co.uk] Gesendet: Freitag, 16. April 2010 10:47 An: Martin Valere Cc: R Help List Betreff: [SPAM] Re: [R] Error in library(gplots) : there is no package called 'gplots' Wichtigkeit: Niedrig Hi Vava, What version of R are you using? I'm not sure but I think that R will refuse to install a package in this way if the version of gplots is incompatiable with the version of R you're using. You can check the depends of packages on CRAN. Regards, James Vava wrote: Thanks for your suggestion Tal. Unfortunately, still no luck with me ... still get the usual error message: Error in library(gplots) : there is no package called 'gplots' , whatever I try to install. This is a mystery to me with respect to why /how. I am really stuck with that problem. Best, Valère -Ursprüngliche Nachricht- Von:Martin Valere Gesendet: Donnerstag, 25. März 2010 10:58 An: 'r-help@R-project.org' Betreff:Error in library(gplots) : there is no package called 'gplots' Dear all, I have an issue trying to install new packages (have tried with RODBC_1.3-1, gplots_2.6.1, gtools_2.7.4 packages) and get the same error message : Error in library(gplots) : there is no package called 'gplots' Only clue I have found so far on the Web is related to Perl (Perl modules are installed on my computer, but which one is related to gplots if any ?); no gplots in usr/lib or /usr/lib64 at least ... I am somewhat lost here, having no idea about Perl (if Perl is really the issue ?). I am using OpenSuse 11.1 (64bits); and R version 2.9.0. Installation of package is performed offline as Root. Valère, Switzerland __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] [SPAM] Re: Error in library(gplots) : there is no package called 'gplots'
Dear James, i have tried to install the package RODBC1-3.1 with R version 2.9.0 and 2.10.1 (using Opensuse 11.1, 64bits). I have tried install.packages locally (package downloaded and stored locally on the computer) or directly from Internet (using different mirrors !). Same results each time ... Same outcome either if I try to install other packages like for instance e1071. So it appears this is not linked to the package itself but rather with R-base or R-devel (both are installed) ... Regards, Valère -Ursprüngliche Nachricht- Von: james [mailto:ja...@ipec.co.uk] Gesendet: Freitag, 16. April 2010 10:47 An: Martin Valere Cc: R Help List Betreff: [SPAM] Re: [R] Error in library(gplots) : there is no package called 'gplots' Wichtigkeit: Niedrig Hi Vava, What version of R are you using? I'm not sure but I think that R will refuse to install a package in this way if the version of gplots is incompatiable with the version of R you're using. You can check the depends of packages on CRAN. Regards, James Vava wrote: Thanks for your suggestion Tal. Unfortunately, still no luck with me ... still get the usual error message: Error in library(gplots) : there is no package called 'gplots' , whatever I try to install. This is a mystery to me with respect to why /how. I am really stuck with that problem. Best, Valère -Ursprüngliche Nachricht- Von:Martin Valere Gesendet: Donnerstag, 25. März 2010 10:58 An: 'r-help@R-project.org' Betreff:Error in library(gplots) : there is no package called 'gplots' Dear all, I have an issue trying to install new packages (have tried with RODBC_1.3-1, gplots_2.6.1, gtools_2.7.4 packages) and get the same error message : Error in library(gplots) : there is no package called 'gplots' Only clue I have found so far on the Web is related to Perl (Perl modules are installed on my computer, but which one is related to gplots if any ?); no gplots in usr/lib or /usr/lib64 at least ... I am somewhat lost here, having no idea about Perl (if Perl is really the issue ?). I am using OpenSuse 11.1 (64bits); and R version 2.9.0. Installation of package is performed offline as Root. Valère, Switzerland __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Error in library(gplots) : there is no package called 'gplots'
Dear all, I have an issue trying to install new packages (have tried with RODBC_1.3-1, gplots_2.6.1, gtools_2.7.4 packages) and get the same error message : Error in library(gplots) : there is no package called 'gplots' Only clue I have found so far on the Web is related to Perl (Perl modules are installed on my computer, but which one is related to gplots if any ?); no gplots in usr/lib or /usr/lib64 at least ... I am somewhat lost here, having no idea about Perl (if Perl is really the issue ?). I am using OpenSuse 11.1 (64bits); and R version 2.9.0. Installation of package is performed offline as Root. Valère, Switzerland [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Error in library(gplots) : there is no package called 'gplots'
Dear Andrew, thanks for our interesrt. yes I mean for instance install.packages(gplots_2.7.4.tar.gz, repos=NULL, type=source) with the correct path to the package location of course Valère [Martin Valere] -Ursprüngliche Nachricht- Von: Andrew Dolman [mailto:andydol...@gmail.com] Gesendet: Donnerstag, 25. März 2010 11:22 An: Martin Valere Cc: r-help@r-project.org Betreff: Re: [R] Error in library(gplots) : there is no package called 'gplots' Do you mean installing packages as in install.packages(gplots) ? for which you need an internet connection. or attaching packages that are already installed, when you want to use them library(gplots) Or are you trying to install from source code or from downloaded zip packages? andydol...@gmail.com On 25 March 2010 09:57, Martin Valere valere.mar...@vogelwarte.ch wrote: Dear all, I have an issue trying to install new packages (have tried with RODBC_1.3-1, gplots_2.6.1, gtools_2.7.4 packages) and get the same error message : Error in library(gplots) : there is no package called 'gplots' Only clue I have found so far on the Web is related to Perl (Perl modules are installed on my computer, but which one is related to gplots if any ?); no gplots in usr/lib or /usr/lib64 at least ... I am somewhat lost here, having no idea about Perl (if Perl is really the issue ?). I am using OpenSuse 11.1 (64bits); and R version 2.9.0. Installation of package is performed offline as Root. Valère, Switzerland [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
