Re: [R] Help request from Ph.D. Students
Try DLM package : dlm: Bayesian and Likelihood Analysis of Dynamic Linear Models M.O On Mon, 2016-01-11 at 13:07 +0100, Franklin Bretschneider wrote: > Dear NECMETTİN ALPAY KOÇAK, > > Re: > > > Dear All, > > I am Ph.D. student in Econometrics. My thesis is about "Linear Filtering on > > a Time Series" which R has already a nice package, namely "Filter". This > > package is really helpful for my study. But, I really help from you to > > create two filter using with "filter" package. > > I want to create two filter desribed in attachment (effects word file) > > using "filter" package. But, I dont know how? > > > > I really need your reply, > > Sincerely, > > > > Alpay KOCAK > > (etc...) > > > I don't know a package called "filter", but a function "filter" is in the > "stats" package > There are however more packages to filter time data. I use "signal", which > also has a "filter" function in addition to functions to design filters > yourself (from simple first-order to higher-order butterworth etc). > This package is intended to filter (electrical) signals, but might be used > for any time series. > In addition, there are several packages for the analysis of seasonal data. > You might search CRAN for the names. > Success and > Best Wishes, > > > Frank > -- > > > > Franklin Bretschneider > Dept of Biology > Utrecht University > brets...@xs4all.nl > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Cramer Rao upper/lower bounds- No Comments ?
Dear R users; I have a question about Cramer Rao upper/lower bounds Is it possible to compute Crammer Rao upper/lower bounds from residuals and corresponding covariance matrices ? Any suggestions will be appreciated, thanks in advance. M.O __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Cramer Rao upper bound computation
Dear R users; I have a question about Cramer Rao upper/lower bounds Is it possible to compute Crammer Rao upper/lower bounds from residuals and corresponding covariance matrices ? Any suggestions will be appreciated, thanks in advance. M.O __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] plotting points over a map using R
library(RgoogleMaps); # download a static map from the Google server library(geomapdata);# Topographic and Geologic Mapping lbrary(PBSmapping); # Draw Maps and Implement Other GIS Procedures STEP1: my_map = GetMap(center=my_center, zoom =my_zoom , destfile=my_out_file ,maptype = mapmaker-hybrid, size=c(640,640)); ?GetMap for more info STEP2: You can add text = tmp = TextOnStaticMap(my_map,lat = my_markers_1[,lat], lon = my_markers_1[,lon], labels=as.character(site_names), col=red, cex=1.1, add=F) # STEP 3: you can add points tmp = PlotOnStaticMap(my_map,lat = my_markers[,lat], lon = my_markers[,lon], cex=2.,pch=10,col=c(black), add=T) add=T is importent # STEP 4: You can add lines tmp = PlotOnStaticMap(my_map,lat = my_markers_2[,lat], lon = my_markers_2[,lon], col=c(blueviolet), add=T, FUN = lines, lwd = 3); I hope will help ! Mohammed On Fri, 2014-01-31 at 09:58 +, 李德磊 wrote: Hello everyone, I have no idea how to plotting points over a map using R, in which the colors of the points stand for the points' value. I'd like to get a map as shown in attachment picture which was plotted using matlab. Does anyone know how to do it using R? Thank you very much for your help in advance. Kind regards,Dli __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] help with kriging interpolation
Hei, Non-parametric linear spatial interpolation algorithm Ordinary Kriging using geoR package library(geoR) # 1. Create a geodata object (wMatrix contains coords and data # ? as.geodata --- for more info my_geoData - as.geodata(wMatrix, coords.col=1:2, data.col=3); # 2. Create a variogram objects . # ? variog --- for more info my_variog - variog(my_geoData , estimator.type = c(modulus), max.dist= 28, uvec=seq(0,60,by=3 ), messages=FALSE); # 3. Try to delete all dupl. in you data my_dup = dup.coords(my_geoData$coords); # 4. Parameter Estimation: sill, range and the nugget # Use MLE or WLS (?likfit OR ?variofit) reml - likfit(my_geoData, cov.model = wave, trend = cte,ini=c(my_sigmaSqrt,my_phi), fix.nugget=T, nugget=my_nygget,lik.method = REML,messages=F); wls - variofit(my_variog, ini = c(0.185, 4.05), cov.model = mat, kap = .5, fix.nugget=T,nug = my_nygget); # IMPORTENT : before callingvariofit() OR likfit() # eyefit() to get appropriate init. value and covariance # function # 5. Perform geostatistical spatial interpolation Ord. Krig (OK) # myPredArea: can be a single point OR a matrix ordKrig - krige.conv(my_geoData, locations=myPredArea,krige=krige.control(obj.m=wls, type.krige = ok)); # 6. Get the predicted value and corresponding variance. ok_pred - cbind(myPredArea,ordKrig$predict, ordKrig$krige.var); Mohammed Ouassou On to., 2013-04-04 at 00:37 -0700, Jeff Newmiller wrote: I am no expert on kriging, but I do know that your question desperately needs a reproducible example [1] that illustrates the actual problem you are encountering. [1] http://stackoverflow.com/questions/5963269/how-to-make-a-great-r-reproducible-example --- Jeff NewmillerThe . . Go Live... DCN:jdnew...@dcn.davis.ca.usBasics: ##.#. ##.#. Live Go... Live: OO#.. Dead: OO#.. Playing Research Engineer (Solar/BatteriesO.O#. #.O#. with /Software/Embedded Controllers) .OO#. .OO#. rocks...1k --- Sent from my phone. Please excuse my brevity. Alfred Oswago numeros2...@gmail.com wrote: All, I am new to using R and know some basics. I wish to use kriging in R to do the following: given data Y =f(X1,X2,X3,.,Xn) --1000+ irregular measured data set. I would like to be able to get a single value y given sinle input set (x1,x2,x3,...xn) A google search on this takes me lierally to the same example on involving analysis with soil sampling and I cannot figure out how to extract single point interpolant. Any examples or pointers appreciated, Numeris. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] ROCR package not installing
try: install.packages(ROCR,dep=T) M.O On to., 2012-11-22 at 16:02 +1000, Philip Robinson wrote: I have tried installing the package (ROCR) with this command: Install.packages(ROCR) And with this command on the command line R CMD INSTALL ROCR_1.0-4.tar.gz But both times I get exactly the same error shown below, I don't understand what is wrong, is this an error in the package code? Thank you Philip probinson@bioinform08:/tmp/RtmpO0rFbx/downloaded_packages$ R CMD INSTALL ROCR_1.0-4.tar.gz * installing to library '/home/probinson/R/x86_64-pc-linux-gnu-library/2.10' * installing *source* package 'ROCR' ... ** R ** data ** demo ** preparing package for lazy loading Loading required package: gtools Loading required package: gdata gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED. gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED. Attaching package: 'gdata' The following object(s) are masked from package:utils : object.size Loading required package: caTools Loading required package: bitops Loading required package: grid Loading required package: KernSmooth KernSmooth 2.23 loaded Copyright M. P. Wand 1997-2009 Attaching package: 'gplots' The following object(s) are masked from package:stats : lowess Error in setMethod(plot, signature(x = performance, y = missing), : no existing definition for function plot Error : unable to load R code in package 'ROCR' ERROR: lazy loading failed for package 'ROCR' * removing '/home/probinson/R/x86_64-pc-linux-gnu-library/2.10/ROCR' probinson@bioinform08:/tmp/RtmpO0rFbx/downloaded_packages$ [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Can't remember which package I used. Anyone can help please?
try : sessionInfo() M.O On ti., 2012-11-13 at 11:12 +, HJ YAN wrote: Dear R users I tried an example earlier to check the results using two different methods of clustering with same data set, and for both methods, say method A and method B. Also I decided to have same number of groups/clusters (here 8 was chosen). I found a good graphical tool in R to compare the distribution of the number in each group/cluster created by method A and method B, e.g. how many of the individuals are clustered as 'Group 1' both by method A and B, and how many are clustered as 'Group 2' both by method A and B and so on. In this case we have 30 and 28 respectively (please see attached table and plot). I lost my code and can not remember which packages/functions I used here? Could anyone recognize and give me some clue? I only made a note 'crosstable' if can ring your bell... Many thanks in advance HJ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] testing two data sets
Hi everyone, I have 2 data sets and I like to carry out a test to find out if they come from the same distribution. Any suggestions ? thanks in advance. M.O __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Help to get fitted and residual value
Hei, i) get names of object returned by lm(). in this case fit names(fit) output from command : names(fit) [1] coefficients residuals effects rank [5] fitted.values assignqrdf.residual [9] contrasts xlevels call terms ii) To get residuals, enter the command myFitRes - fit$residuals; iii) myFitVals - fit$fitted.values I hope will help, M.O On ti., 2011-12-06 at 22:20 -0800, arunkumar wrote: Data- read.csv(C:/FE and RE.csv) Formula=Y~X2+X3+X4 + X5+X6 fit=lm(formula=Formula,data=Data) My sample Data State Year Y X2 X3 X4 X5 X6 S2 1960 27.8 397.5 42.2 50.7 78.3 65.8 S1 1960 29.9 413.3 38.1 52 79.2 66.9 S2 1961 29.8 439.2 40.3 54 79.2 67.8 S1 1961 30.8 459.7 39.5 55.3 79.2 69.6 Is there any way to fitted and residual for the new set of data. or should i create formula manually and pass the values individually S2 1962 31.2 492.9 37.3 54.7 77.4 68.7 S1 1962 33.3 528.6 38.1 63.7 80.2 73.6 S2 1963 35.6 560.3 39.3 69.8 80.4 76.3 -- View this message in context: http://r.789695.n4.nabble.com/Help-to-get-fitted-and-residual-value-tp4167808p4167808.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] how to read a group of files into one dataset?
inputDataPath - /home/.../bla/; #Directory containing data files
szPattern - .dat; # File extension
# Get all files name in the specified directory
file2process - list.files(inputDataPath, pattern=szPattern);
# Get number of files to be processed
iFileCnt - length(file2process);
dbMatrix - list(); # Empty list (Your local database)
for (i in 1:iFileCnt)
{
dataFile - sprintf(%s%s, inputDataPath, file2process[i]);
dbMatrix[i] - dataFile;
}
ldb - lapply(dbMatrix, read.table, header = T);
local database ldb is an array of matrix, each matrix contains 1 data
file.
# Get the matrix from list(local database)
Mat - as.matrix(ldb[[i]]);
I hope this will help !
On to., 2011-08-25 at 11:43 +0200, Eik Vettorazzi wrote:
Hi Jie,
you have to merge the sequential data.frames, and depending on the
structure of your inputs and the way you want your resulting data.frame
(which you both didn't specify) either ?merge or ?rbind should help.
cheers
Am 25.08.2011 10:17, schrieb Jie TANG:
for example : I have files with the name
ma01.dat,ma02.dat,ma03.dat,ma04.dat,I want to read the data in
these files into one data.frame
flnm-paste(obs,101:114,_err.dat,sep=)
newdata-read.table(flnm,skip=2)
data-(flnm,skip=2)
but the data only contains data from the flnm[1]
I also tried as below :
for (i in 1:9) {
data-read.table(flnm[i],skip=2)
}
but i failed how could I modified my script?
is there any advices?
--
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and provide commented, minimal, self-contained, reproducible code.
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] Fiting a trend + periodic signal
Dear all, I have a time series and I like to fit S(t) = T(t) + P(t) T(t) = Linear Trend = a + bt P(t) = Periodic Signal = sum(Ai*cos(wt) + Bi*sin(wt) ) for i=1,...,3. Thanks in advance, Best regards, __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] geoR - likfit failure
Hi I'm using geoR package to perform linear spatial interpolation(OK). The function likfit() fails to compute REML. The error meassage is : Error in solve.default(v$varcov, xmat); How I can find out that likfit() is failed to process and retrieving the error message ? Thank you so much for your help. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
