[R] Conduct Network Analysis

[SEB140004 Student]

Greeting.

Dear Mr/Mrs/Miss,

I want to create a network by using R but I only have a table that contain
OTU ID and the abundance value of two samples ONLY.

Isn't possible? If can, which package can be used?
Greatly appreciated to any suggestions and helps.

Thank you.

Best regards,
Kang Chin Yi

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] Question about correlation

[SEB140004 Student]

Greeting.

Dear Mr/Mrs/Miss,

OTU ID Health Disease
Bacterial 1 0.29 0.34
Bacterial 2 0.25 0.07
Bacterial 3 0.06 0.06
Bacterial 4 0.07 0.09
Bacterial 5 0.02 0.05
Above show the first 6 data sets, may I ask that the reason of R show the
error like "Error in cor(data) : 'x' must be numeric" ? And how to solve
it? Besides, isn't this data can conduct correlation matrix?

Moreover, isn't this data sets can be plot into network? If can, which
package should I use?

Thank you.

Best regards,
Kang Chin Yi

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.