Re: [R] Notched boxplot using R
Instead of boxes use boxplot () then these values will be disappear -- View this message in context: http://r.789695.n4.nabble.com/Notched-boxplot-using-R-tp4710930p472.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Jaccard index
sim(file_name,method=jaccard) this command is giving the raw wise similarity matrix how can i find column wise similarity matrix? what is the command? please help me -- View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-tp471.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Labeling world map
I draw world map using library(maptools) library(ggmap) library(mapdata) library(maps) map(world,fill=TRUE,col=White,bg=light blue,ylim=c(-60,90),mar=c(0,0,0,0)) native - c(brazil,sao paulo state) nat -geocode(native) nat.x - nat$lon nat.y - nat$lat points(nat.x,nat.y,col=yellow,pch=16) How can i put lilte for this map and label points -- View this message in context: http://r.789695.n4.nabble.com/Labeling-world-map-tp4710296.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] P value from jaccard's index matrix
My table having 40 raw and 4 columns, in that 4 columns first column belongs to one group and the remaining constitute the other group. using following commands for calculating jaccard's index x - read.csv(file name,header=T, sep= ) jac - vegdist(x,method=jaccard) from this out file(jac) how can i find the p value for two groups ? and how can i plot notched box plot of these two groups? when i use boxes (as.matrix(jac)~x$first column,notch=TRUE) it showing 40 box plots.why it so? -- View this message in context: http://r.789695.n4.nabble.com/P-value-from-jaccard-s-index-matrix-tp4710302.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] jaccards index
hi.. I have a csv file containing 35 coloumns and 193 rows.i want to generate jaccards index to normalise these data.how can i do this also from these data i want to draw boxplot.plz help -- View this message in context: http://r.789695.n4.nabble.com/jaccards-index-tp4710057.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Problem in installing simba package
When installing simba package following error showing install.packages(simba) Installing package into ‘/home/cbl/R/x86_64-redhat-linux-gnu-library/3.1’ (as ‘lib’ is unspecified) --- Please select a CRAN mirror for use in this session --- also installing the dependency ‘vegan’ trying URL 'http://ftp.iitm.ac.in/cran/src/contrib/vegan_2.3-0.tar.gz' Error in download.file(url, destfile, method, mode = wb, ...) : cannot open URL 'http://ftp.iitm.ac.in/cran/src/contrib/vegan_2.3-0.tar.gz' In addition: Warning message: In download.file(url, destfile, method, mode = wb, ...) : cannot open: HTTP status was '0 (null)' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘vegan’ failed trying URL 'http://ftp.iitm.ac.in/cran/src/contrib/simba_0.3-5.tar.gz' Error in download.file(url, destfile, method, mode = wb, ...) : cannot open URL 'http://ftp.iitm.ac.in/cran/src/contrib/simba_0.3-5.tar.gz' In addition: Warning message: In download.file(url, destfile, method, mode = wb, ...) : cannot open: HTTP status was '0 (null)' Warning in download.packages(pkgs, destdir = tmpd, available = available, : download of package ‘simba’ failed -- View this message in context: http://r.789695.n4.nabble.com/Problem-in-installing-simba-package-tp4709882.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Jaccard index
How can i find jaccard index of two groups,which package is to be used? please help -- View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-tp4709883.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Putting Zero in table using R
I have exel table having 39 coloumns ,and some cells are balnk.How can i put zero in these empty cells using R -- View this message in context: http://r.789695.n4.nabble.com/Putting-Zero-in-table-using-R-tp4709807.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Colour gradient is not working.
How can i use colour gradient according to y axis if the y values not increasing gradualy -- View this message in context: http://r.789695.n4.nabble.com/Colour-gradient-is-not-working-tp4708000p4708595.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Colour gradient is not working.
sir i done this plot(1:33292, 1:33292,col=Color(33292)) command then it gives the coloured line but again it is not working in my data why? -- View this message in context: http://r.789695.n4.nabble.com/Colour-gradient-is-not-working-tp4708000p4708036.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Colour gradient is not working.
I have a table of 33291 rows. When i try to plot the graph with gradient colour using colorRampPalette command but the out put graph is colourless or in black colour.But when i try the same command with small values it is working why it so? Color - colorRampPalette(c(red,blue)) plot(x,y,col=Color(33292)) -- View this message in context: http://r.789695.n4.nabble.com/Colour-gradient-is-not-working-tp4708000.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
