[R] Annotation database

2009-08-29 Thread Sukhbir Rattan 
Hi,

I have 15 CEL files of Affymetrix platform from GEO.

Title of experiment is : Ecoli_ASv2 Affymetrix E. coli Antisense Genome
Array.

I am looking for the package available in R for this array for annotation.

I  have already tried doing annotation from packages like org.EcK12.eg.db
but I don't got the success.

Is any other package in the form of database available for E.coli for
Annotation?

By
Sukhbir Singh Rattan

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Re: [R] Annotation database

2009-08-29 Thread David Winsemius 


On Aug 29, 2009, at 2:43 AM, Sukhbir Rattan wrote:


Hi,

I have 15 CEL files of Affymetrix platform from GEO.

Title of experiment is : Ecoli_ASv2 Affymetrix E. coli Antisense  
Genome

Array.

I am looking for the package available in R for this array for  
annotation.


I  have already tried doing annotation from packages like  
org.EcK12.eg.db

but I don't got the success.

Is any other package in the form of database available for E.coli for
Annotation?


You're probably on the wrong mailing list, but see if these help:

http://article.gmane.org/gmane.science.biology.informatics.conductor/20614

http://www.bioconductor.org/data/cdfenvs/repos/html/ecoliasv2cdfv1.4.3.html

--

David Winsemius, MD
Heritage Laboratories
West Hartford, CT

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and provide commented, minimal, self-contained, reproducible code.