Re: [R] installation problem for a new package

[Jeff Newmiller]

Do use "reply-all"... others may be able to respond more quickly or more 
accurately than I. I have re-introduced the mailing list to this reply.

For example, if you read [1] it says there is a system requirement that the 
completely separate gmp software be installed using your system software 
installation tools. I happen to be unfamiliar with the details of MacOS system 
administration, so I cannot offer useful guidance other than that you need to 
solve this and that there exists a mailing list dedicated to such 
MacOS-specific questions about R [2]. You can of course simply Google for 
similar threads or blogs about gmp on MacOS to find clues as well.

I will also add that there seem to be a variety of conditions that can cause 
the automatic dependency management features of install.packages() to fail, and 
in such cases it is normal to focus on installing the problematic dependent 
packages one at a time. This is particularly true in this case where there are 
requirements for the dependency beyond what R can deal with, so ignoring advice 
from those with more experience than yourself about focusing on the dependency 
separately is probably less productive than simply following that advice.

[1] https://cran.r-project.org/web/packages/gmp/index.html
[2] https://stat.ethz.ch/mailman/listinfo/r-sig-mac

On February 24, 2022 12:11:14 PM PST, Tariq Khasiri  
wrote:
>Will correct my formatting as you kindly suggested.
>
>I believe gmp and CVXR is not getting installed but with the dependencies,
>it's supposed to be installed as the package builder posted in his website.
>Therefore, I'm quite puzzled that do I need to install the other two
>packages separately or not?
>
>install_github("asheshrambachan/HonestDiD", dependencies = TRUE)
>Downloading GitHub repo asheshrambachan/HonestDiD@HEAD
>Installing 1 packages: gmp
>
>  There is a binary version available but the source version is later:
> binary source needs_compilation
>gmp 0.6-2.1  0.6-4  TRUE
>
>Do you want to install from sources the package which needs compilation?
>(Yes/no/cancel) yes
>installing the source package ‘gmp’
>
>trying URL 'https://cran.rstudio.com/src/contrib/gmp_0.6-4.tar.gz'
>Content type 'application/x-gzip' length 163941 bytes (160 KB)
>==
>downloaded 160 KB
>
>* installing *source* package ‘gmp’ ...
>** package ‘gmp’ successfully unpacked and MD5 sums checked
>** using staged installation
>checking for gcc... clang -mmacosx-version-min=10.13
>checking whether the C compiler works... yes
>checking for C compiler default output file name... a.out
>checking for suffix of executables...
>checking whether we are cross compiling... no
>checking for suffix of object files... o
>checking whether we are using the GNU C compiler... yes
>checking whether clang -mmacosx-version-min=10.13 accepts -g... yes
>checking for clang -mmacosx-version-min=10.13 option to accept ISO C89...
>none needed
>checking how to run the C preprocessor... clang -mmacosx-version-min=10.13
>-E
>checking whether we are using the GNU C++ compiler... yes
>checking whether clang++ -mmacosx-version-min=10.13 -std=gnu++14 accepts
>-g... yes
>checking for grep that handles long lines and -e... /usr/bin/grep
>checking for egrep... /usr/bin/grep -E
>checking for ANSI C header files... rm: conftest.dSYM: is a directory
>rm: conftest.dSYM: is a directory
>yes
>checking for sys/types.h... yes
>checking for sys/stat.h... yes
>checking for stdlib.h... yes
>checking for string.h... yes
>checking for memory.h... yes
>checking for strings.h... yes
>checking for inttypes.h... yes
>checking for stdint.h... yes
>checking for unistd.h... yes
>checking gmp.h usability... no
>checking gmp.h presence... no
>checking for gmp.h... no
>configure: error: Header file gmp.h not found; maybe use
>--with-gmp-include=INCLUDE_PATH
>ERROR: configuration failed for package ‘gmp’
>* removing
>‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library/gmp’
>
>The downloaded source packages are in
>‘/private/var/folders/4m/tvx9lnqs0rx6wgnysxz36vm0gp/T/Rtmpk3pocK/downloaded_packages’
>✓  checking for file
>‘/private/var/folders/4m/tvx9lnqs0rx6wgnysxz36vm0gp/T/Rtmpk3pocK/remotes86e84daddc5e/asheshrambachan-HonestDiD-419f305/DESCRIPTION’
>...
>─  preparing ‘HonestDiD’:
>✓  checking DESCRIPTION meta-information ...
>─  checking for LF line-endings in source and make files and shell scripts
>─  checking for empty or unneeded directories
>─  building ‘HonestDiD_0.2.0.tar.gz’
>
>* installing *source* package ‘HonestDiD’ ...
>** using staged installation
>** R
>** data
>*** moving datasets to lazyload DB
>** inst
>** byte-compile and prepare package for lazy loading
>Error: package or namespace load failed for ‘CVXR’ in loadNamespace(j <-
>i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
> there is no package called ‘gmp’
>Error: package ‘CVXR’ could not be loaded
>Execution halted
>ERROR: lazy loading failed for package ‘H

Re: [R] installation problem for a new package

[Jeff Newmiller]

These messages seem relevant:

>Error: package �CVXR’ could not be loaded
>Warning messages:
>1: In i.p(...) : installation of package �gmp’ had non-zero exit status

You need to make sure these packages are installed successfully before the 
package you are interested will install.

Please don't send formatted email to this list ... as the Posting Guide 
indicates, the list is for plain text and others may receive a garbled version 
of what you sent it your email program is not configured properly.

On February 24, 2022 11:43:05 AM PST, Tariq Khasiri  
wrote:
>Hello everyone,
>
>I'm trying to install a package honestdid and following the commands of the
>developer of that package
>
># Install some packages
>library(devtools)
>install_github("bcallaway11/BMisc", dependencies = TRUE)
>install_github("bcallaway11/did", dependencies = TRUE)
>install_github("asheshrambachan/HonestDiD", dependencies = TRUE)
>
>
>But, the error message is saying:
>
>* installing *source* package �HonestDiD’ ...
>** using staged installation
>** R
>** data
>*** moving datasets to lazyload DB
>** inst
>** byte-compile and prepare package for lazy loading
>Error: package or namespace load failed for �CVXR’ in loadNamespace(j
><- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]):
> there is no package called �gmp’
>Error: package �CVXR’ could not be loaded
>Execution halted
>ERROR: lazy loading failed for package �HonestDiD’
>* removing 
>�/Library/Frameworks/R.framework/Versions/4.1/Resources/library/HonestDiD’
>Warning messages:
>1: In i.p(...) : installation of package �gmp’ had non-zero exit status
>2: In i.p(...) :
>  installation of package
>�/var/folders/4m/tvx9lnqs0rx6wgnysxz36vm0gp/T//Rtmpk3pocK/file86e83034c58c/HonestDiD_0.2.0.tar.gz’
>had non-zero exit status
>
>
>Can anyone guide me why i'm having this issue? Thanks in advance !
>
>   [[alternative HTML version deleted]]
>
>__
>R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

-- 
Sent from my phone. Please excuse my brevity.

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Re: [R] installation problem on Ubuntu

[David Winsemius]

> On Apr 22, 2016, at 12:47 PM, Paul Tremblay  wrote:
> 
> LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu/:$LD_LIBRARY_PATH
> source ~/.bash_profile

On my machine Sys.getenv("LD_LIBRARY_PATH") returns "" in R and echo 
$LD_LIBRARY_PATH likewise returns only a carriage return from a bash console, 
but I'm on a UNIX box and Linux may be different. You might try posting on 
R-SIG-Debian since Ubuntu is a fork of Debian. 

Best;
David.
> 
> I still get the same error. 
> 
> On Thu, Apr 21, 2016 at 7:45 PM, David Winsemius  
> wrote:
> 
> > On Apr 21, 2016, at 1:23 PM, Paul Tremblay  wrote:
> >
> > I was able to install the curl library with no problems. However, when I
> > tried to install ggplot (install.packages("ggplot2")), I got the same
> > message as earlier, that R can't load internet.so.
> 
> Is the libcurl directory in your search path?
> 
> David.
> >
> > Thanks for your help!
> >
> > On Wed, Apr 20, 2016 at 1:24 PM, Tom Wright  wrote:
> >
> >> apt-get install curl libcurl4-openssl-dev
> >>
> >> On Wed, 2016-04-20 at 09:36 -0700, Paul Tremblay wrote:
> >>> I needed to update R so I could install ggplot. I am running Ubuntu
> >> 12.04.
> >>> I cannot upgrade Ubuntu because I am using a work computer.
> >>>
> >>> I tried upgrading the normal way:
> >>>
> >>> sudo apt-get update
> >>> sudo apt-get install r-base r-base-dev
> >>>
> >>> But this only installed an earlier version. Finally I tried installing
> >> from
> >>> source (./configure, Make install). This worked. However, when I try to
> >>> install packages, I get this error:
> >>>
> >>> Error in download.file(url, destfile = f, quiet = TRUE) :
> >>>  internet routines cannot be loaded
> >>> In addition: Warning message:
> >>> In download.file(url, destfile = f, quiet = TRUE) :
> >>>  unable to load shared object '/usr/local/lib/R/modules//internet.so':
> >>>  /usr/local/lib/R/modules//internet.so: undefined symbol:
> >> curl_multi_wait
> >>>
> >>>
> > ls /usr/local/lib/R/modules/
> > R_X11.so  R_de.so  internet.so  lapack.so
> >>>
> >>> Thanks!
> >>>
> >>> P
> >>>
> >>>  [[alternative HTML version deleted]]
> >>>
> >>> __
> >>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >>> https://stat.ethz.ch/mailman/listinfo/r-help
> >>> PLEASE do read the posting guide
> >> http://www.R-project.org/posting-guide.html
> >>> and provide commented, minimal, self-contained, reproducible code.
> >>
> >>
> >>
> >
> >   [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
> 
> David Winsemius
> Alameda, CA, USA
> 
> 

David Winsemius
Alameda, CA, USA

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Re: [R] installation problem on Ubuntu

[Paul Tremblay]

LD_LIBRARY_PATH=/usr/lib/x86_64-linux-gnu/:$LD_LIBRARY_PATH
source ~/.bash_profile

I still get the same error.

On Thu, Apr 21, 2016 at 7:45 PM, David Winsemius 
wrote:

>
> > On Apr 21, 2016, at 1:23 PM, Paul Tremblay 
> wrote:
> >
> > I was able to install the curl library with no problems. However, when I
> > tried to install ggplot (install.packages("ggplot2")), I got the same
> > message as earlier, that R can't load internet.so.
>
> Is the libcurl directory in your search path?
>
> David.
> >
> > Thanks for your help!
> >
> > On Wed, Apr 20, 2016 at 1:24 PM, Tom Wright  wrote:
> >
> >> apt-get install curl libcurl4-openssl-dev
> >>
> >> On Wed, 2016-04-20 at 09:36 -0700, Paul Tremblay wrote:
> >>> I needed to update R so I could install ggplot. I am running Ubuntu
> >> 12.04.
> >>> I cannot upgrade Ubuntu because I am using a work computer.
> >>>
> >>> I tried upgrading the normal way:
> >>>
> >>> sudo apt-get update
> >>> sudo apt-get install r-base r-base-dev
> >>>
> >>> But this only installed an earlier version. Finally I tried installing
> >> from
> >>> source (./configure, Make install). This worked. However, when I try to
> >>> install packages, I get this error:
> >>>
> >>> Error in download.file(url, destfile = f, quiet = TRUE) :
> >>>  internet routines cannot be loaded
> >>> In addition: Warning message:
> >>> In download.file(url, destfile = f, quiet = TRUE) :
> >>>  unable to load shared object '/usr/local/lib/R/modules//internet.so':
> >>>  /usr/local/lib/R/modules//internet.so: undefined symbol:
> >> curl_multi_wait
> >>>
> >>>
> > ls /usr/local/lib/R/modules/
> > R_X11.so  R_de.so  internet.so  lapack.so
> >>>
> >>> Thanks!
> >>>
> >>> P
> >>>
> >>>  [[alternative HTML version deleted]]
> >>>
> >>> __
> >>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >>> https://stat.ethz.ch/mailman/listinfo/r-help
> >>> PLEASE do read the posting guide
> >> http://www.R-project.org/posting-guide.html
> >>> and provide commented, minimal, self-contained, reproducible code.
> >>
> >>
> >>
> >
> >   [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
> David Winsemius
> Alameda, CA, USA
>
>

[[alternative HTML version deleted]]

__
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and provide commented, minimal, self-contained, reproducible code.

Re: [R] installation problem on Ubuntu

[David Winsemius]

> On Apr 21, 2016, at 1:23 PM, Paul Tremblay  wrote:
> 
> I was able to install the curl library with no problems. However, when I
> tried to install ggplot (install.packages("ggplot2")), I got the same
> message as earlier, that R can't load internet.so.

Is the libcurl directory in your search path?

David.
> 
> Thanks for your help!
> 
> On Wed, Apr 20, 2016 at 1:24 PM, Tom Wright  wrote:
> 
>> apt-get install curl libcurl4-openssl-dev
>> 
>> On Wed, 2016-04-20 at 09:36 -0700, Paul Tremblay wrote:
>>> I needed to update R so I could install ggplot. I am running Ubuntu
>> 12.04.
>>> I cannot upgrade Ubuntu because I am using a work computer.
>>> 
>>> I tried upgrading the normal way:
>>> 
>>> sudo apt-get update
>>> sudo apt-get install r-base r-base-dev
>>> 
>>> But this only installed an earlier version. Finally I tried installing
>> from
>>> source (./configure, Make install). This worked. However, when I try to
>>> install packages, I get this error:
>>> 
>>> Error in download.file(url, destfile = f, quiet = TRUE) :
>>>  internet routines cannot be loaded
>>> In addition: Warning message:
>>> In download.file(url, destfile = f, quiet = TRUE) :
>>>  unable to load shared object '/usr/local/lib/R/modules//internet.so':
>>>  /usr/local/lib/R/modules//internet.so: undefined symbol:
>> curl_multi_wait
>>> 
>>> 
> ls /usr/local/lib/R/modules/
> R_X11.so  R_de.so  internet.so  lapack.so
>>> 
>>> Thanks!
>>> 
>>> P
>>> 
>>>  [[alternative HTML version deleted]]
>>> 
>>> __
>>> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>> 
>> 
>> 
> 
>   [[alternative HTML version deleted]]
> 
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

David Winsemius
Alameda, CA, USA

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] installation problem on Ubuntu

[Paul Tremblay]

I was able to install the curl library with no problems. However, when I
tried to install ggplot (install.packages("ggplot2")), I got the same
message as earlier, that R can't load internet.so.

Thanks for your help!

On Wed, Apr 20, 2016 at 1:24 PM, Tom Wright  wrote:

> apt-get install curl libcurl4-openssl-dev
>
> On Wed, 2016-04-20 at 09:36 -0700, Paul Tremblay wrote:
> > I needed to update R so I could install ggplot. I am running Ubuntu
> 12.04.
> > I cannot upgrade Ubuntu because I am using a work computer.
> >
> > I tried upgrading the normal way:
> >
> > sudo apt-get update
> >  sudo apt-get install r-base r-base-dev
> >
> > But this only installed an earlier version. Finally I tried installing
> from
> > source (./configure, Make install). This worked. However, when I try to
> > install packages, I get this error:
> >
> > Error in download.file(url, destfile = f, quiet = TRUE) :
> >   internet routines cannot be loaded
> > In addition: Warning message:
> > In download.file(url, destfile = f, quiet = TRUE) :
> >   unable to load shared object '/usr/local/lib/R/modules//internet.so':
> >   /usr/local/lib/R/modules//internet.so: undefined symbol:
> curl_multi_wait
> >
> >
> > >> ls /usr/local/lib/R/modules/
> > >> R_X11.so  R_de.so  internet.so  lapack.so
> >
> > Thanks!
> >
> > P
> >
> >   [[alternative HTML version deleted]]
> >
> > __
> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
>
>

[[alternative HTML version deleted]]

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] installation problem on Ubuntu

[Ista Zahn]

Hi Paul,

Please keep the list copied so that others might chime in with suggestions.

I'm afraid "no success" is too vague to be useful. What did you do,
and what errors did you encounter?

Best,
Ista

On Thu, Apr 21, 2016 at 1:48 PM, Paul Tremblay  wrote:
> Yes, I tried those instructions as well with no success.
>
> On Wed, Apr 20, 2016 at 12:45 PM, Ista Zahn  wrote:
>>
>> Hi Paul,
>>
>> Did you read the installation instructions for Ubuntu at
>> https://cloud.r-project.org/bin/linux/ubuntu/ ?
>>
>> Best,
>> Ista
>>
>>
>> On Wed, Apr 20, 2016 at 12:36 PM, Paul Tremblay 
>> wrote:
>> > I needed to update R so I could install ggplot. I am running Ubuntu
>> > 12.04.
>> > I cannot upgrade Ubuntu because I am using a work computer.
>> >
>> > I tried upgrading the normal way:
>> >
>> > sudo apt-get update
>> >  sudo apt-get install r-base r-base-dev
>> >
>> > But this only installed an earlier version. Finally I tried installing
>> > from
>> > source (./configure, Make install). This worked. However, when I try to
>> > install packages, I get this error:
>> >
>> > Error in download.file(url, destfile = f, quiet = TRUE) :
>> >   internet routines cannot be loaded
>> > In addition: Warning message:
>> > In download.file(url, destfile = f, quiet = TRUE) :
>> >   unable to load shared object '/usr/local/lib/R/modules//internet.so':
>> >   /usr/local/lib/R/modules//internet.so: undefined symbol:
>> > curl_multi_wait
>> >
>> >
>> >>> ls /usr/local/lib/R/modules/
>> >>> R_X11.so  R_de.so  internet.so  lapack.so
>> >
>> > Thanks!
>> >
>> > P
>> >
>> > [[alternative HTML version deleted]]
>> >
>> > __
>> > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> > https://stat.ethz.ch/mailman/listinfo/r-help
>> > PLEASE do read the posting guide
>> > http://www.R-project.org/posting-guide.html
>> > and provide commented, minimal, self-contained, reproducible code.
>
>

__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] installation problem on Ubuntu

[Jeff Newmiller]

Have you read the CRAN  instructions for installing on Ubuntu?  Have you read 
the Posting Guide that mentions the R-sig-debian mailing list and that if you 
need help compiling R this is not the right list?
-- 
Sent from my phone. Please excuse my brevity.

On April 20, 2016 9:36:51 AM PDT, Paul Tremblay  wrote:
>I needed to update R so I could install ggplot. I am running Ubuntu
>12.04.
>I cannot upgrade Ubuntu because I am using a work computer.
>
>I tried upgrading the normal way:
>
>sudo apt-get update
> sudo apt-get install r-base r-base-dev
>
>But this only installed an earlier version. Finally I tried installing
>from
>source (./configure, Make install). This worked. However, when I try to
>install packages, I get this error:
>
>Error in download.file(url, destfile = f, quiet = TRUE) :
>  internet routines cannot be loaded
>In addition: Warning message:
>In download.file(url, destfile = f, quiet = TRUE) :
>  unable to load shared object '/usr/local/lib/R/modules//internet.so':
>/usr/local/lib/R/modules//internet.so: undefined symbol:
>curl_multi_wait
>
>
>>> ls /usr/local/lib/R/modules/
>>> R_X11.so  R_de.so  internet.so  lapack.so
>
>Thanks!
>
>P
>
>   [[alternative HTML version deleted]]
>
>__
>R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

[[alternative HTML version deleted]]

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and provide commented, minimal, self-contained, reproducible code.

[R] installation problem on Ubuntu

[Paul Tremblay]

I needed to update R so I could install ggplot. I am running Ubuntu 12.04.
I cannot upgrade Ubuntu because I am using a work computer.

I tried upgrading the normal way:

sudo apt-get update
 sudo apt-get install r-base r-base-dev

But this only installed an earlier version. Finally I tried installing from
source (./configure, Make install). This worked. However, when I try to
install packages, I get this error:

Error in download.file(url, destfile = f, quiet = TRUE) :
  internet routines cannot be loaded
In addition: Warning message:
In download.file(url, destfile = f, quiet = TRUE) :
  unable to load shared object '/usr/local/lib/R/modules//internet.so':
  /usr/local/lib/R/modules//internet.so: undefined symbol: curl_multi_wait


>> ls /usr/local/lib/R/modules/
>> R_X11.so  R_de.so  internet.so  lapack.so

Thanks!

P

[[alternative HTML version deleted]]

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Re: [R] Installation problem

[peter dalgaard]

Google suggests that that error message is usually associated with cell phone 
browsers, so what exactly are you doing (all steps, including browser info)? I 
doubt that this an issue with R as such, more likely you have a general issue 
with large downloads.

- Peter D


On 07 May 2014, at 19:37 , Stephanie Sangalang  wrote:

> Dear R-Help volunteers,
> 
> I received this error message when I tried to install R on my laptop: "The 
> page is too large to send back." The laptop has Windows 8, x64, enough memory 
> space, and open access (I have administrative rights). I have installed SPSS 
> and SQL but have never installed R. I tried multiple times to install R and 
> reviewed the information and FAQs from the R Project website. Unfortunately, 
> I have not been able to find any answers. 
> 
> If possible, can you please tell me:
> 1) What does this error message mean?
> 2) What (if any) was the original error?
> 3) How I may resolve the error in order to successfully install R? 
> 
> I admit that I am a novice when it comes to software, so, it is highly likely 
> that I have made a mistake. I would greatly appreciate any advice you could 
> give me. Thank you very much for your assistance!
> 
> Best regards,
> Stephanie Sangalang 
> 
>> Date: Tue, 6 May 2014 16:52:51 +0100
>> From: rip...@stats.ox.ac.uk
>> To: sosangal...@hotmail.com; c...@r-project.org
>> Subject: Re: Installation problem
>> 
>> On 06/05/2014 13:27, Stephanie Sangalang wrote:
>>> Dear R-Project Team,
>>> 
>>> I have not been able to install R on my laptop. I received the error
>>> message, "This page is too large to send back." My laptop currently has
>>> SPSS and SQL. Can you please help me resolve this issue? Thank you very
>>> much!
>>> 
>>> Best regards,
>>> Stephanie Sangalang
>> 
>> This is CRAN: ask for help on R-help after studying its posting guide at 
>> http://www.r-project.org/posting-guide.html .
>> 
>> -- 
>> Brian D. Ripley,  rip...@stats.ox.ac.uk
>> Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
>> University of Oxford, Tel:  +44 1865 272861 (self)
>> 1 South Parks Road, +44 1865 272866 (PA)
>> Oxford OX1 3TG, UKFax:  +44 1865 272595
>   
>   
>   [[alternative HTML version deleted]]
> 
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

-- 
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Email: pd@cbs.dk  Priv: pda...@gmail.com

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] R installation Problem

[Uwe Ligges]

On 08.07.2013 11:42, sridhar srinivasan wrote:

Dear R Developers,

I have two doubts related to R

1. i try to install R package 3.0 in my linux system ./configure.
it gives Error as
configure: error: --with-readline=yes (default) and headers/libs are not
available


Read the R Installation manual and procive libreadline.



2. This is related to library
i am trying to install the library(cummeRbund) in differeent R version in
another system
it shows Error as


source("http://bioconductor.org/biocLite.R";)

Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") : unable to resolve 'bioconductor.org'

biocLite("cummeRbund")

Error: could not find function "biocLite"


No proper internet connection?

best,
Uwe Ligges





Could anybody suggest on the same..

Thanks
Sridhar

[[alternative HTML version deleted]]

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.



__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] R installation Problem

[sridhar srinivasan]

Dear R Developers,

I have two doubts related to R

1. i try to install R package 3.0 in my linux system ./configure.
it gives Error as
configure: error: --with-readline=yes (default) and headers/libs are not
available

2. This is related to library
i am trying to install the library(cummeRbund) in differeent R version in
another system
it shows Error as

> source("http://bioconductor.org/biocLite.R";)
Error in file(con, "r") : cannot open the connection
In addition: Warning message:
In file(con, "r") : unable to resolve 'bioconductor.org'
> biocLite("cummeRbund")
Error: could not find function "biocLite"

Could anybody suggest on the same..

Thanks
Sridhar

[[alternative HTML version deleted]]

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] Linux 64-bit R installation problem - "Failed dependencies"

[noclue_]

Hi. Marc,

Thanks so much for your reply.
Have a nice weekend!

Tim

-- Original Message --
From: "Marc Schwartz-3 [via R]" 
To: noclue_ 
Subject: Re: Linux 64-bit R installation problem - "Failed dependencies"
Date: Thu, 7 Oct 2010 05:31:26 -0700 (PDT)

 On Oct 7, 2010, at 3:50 AM, noclue_ wrote: 

>  
> I am trying to install 64 bit R on Linux.  But I got the following error -   
>  
>  
> rpm -i R-core-2.10.0-2.fc11.x86_64.rpm 
>  
> warning: R-core-2.10.0-2.fc11.x86_64.rpm: Header V3 DSA signature: NOKEY, 
> key ID 97d3544e 
> error: Failed dependencies: 
>/bin/bash is needed by R-core-2.10.0-2.fc11.x86_64 
>/bin/sh is needed by R-core-2.10.0-2.fc11.x86_64 
>/sbin/ldconfig is needed by R-core-2.10.0-2.fc11.x86_64 
>/usr/bin/perl is needed by R-core-2.10.0-2.fc11.x86_64 
>cups is needed by R-core-2.10.0-2.fc11.x86_64 
>gawk is needed by R-core-2.10.0-2.fc11.x86_64 
>ld-linux-x86-64.so.2()(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>ld-linux-x86-64.so.2(GLIBC_2.2.5)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>less is needed by R-core-2.10.0-2.fc11.x86_64 
>libICE.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libSM.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libX11.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libXmu.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libXt.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libbz2.so.1()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libc.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libc.so.6(GLIBC_2.2.5)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libc.so.6(GLIBC_2.3)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libc.so.6(GLIBC_2.3.4)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libc.so.6(GLIBC_2.4)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libc.so.6(GLIBC_2.7)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libc.so.6(GLIBC_2.8)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libcairo.so.2()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libdl.so.2()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libdl.so.2(GLIBC_2.2.5)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libgcc_s.so.1()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libgfortran.so.3()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libgfortran.so.3(GFORTRAN_1.0)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libglib-2.0.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libgmodule-2.0.so.0()(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libgobject-2.0.so.0()(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libicui18n.so.40()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libicuuc.so.40()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libjpeg.so.62()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libm.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libm.so.6(GLIBC_2.2.5)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libpango-1.0.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libpangocairo-1.0.so.0()(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libpcre.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libpng12.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libpng12.so.0(PNG12_0)(64bit) is needed by 
> R-core-2.10.0-2.fc11.x86_64 
>libreadline.so.5()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libstdc++.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libtcl8.5.so()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libtiff.so.3()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libtk8.5.so()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>libz.so.1()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(Carp) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(Cwd) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(Exporter) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(File::Basename) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(File::Compare) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(File::Copy) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(File::Copy::Recursive) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(File::Find) is needed by R-core-2.10.0-2.fc11.x86_64 
>perl(File::Path) is needed by R-core

Re: [R] Linux 64-bit R installation problem - "Failed dependencies"

[Marc Schwartz]

On Oct 7, 2010, at 3:50 AM, noclue_ wrote:

> 
> I am trying to install 64 bit R on Linux.  But I got the following error -  
> 
> 
> rpm -i R-core-2.10.0-2.fc11.x86_64.rpm
> 
> warning: R-core-2.10.0-2.fc11.x86_64.rpm: Header V3 DSA signature: NOKEY,
> key ID 97d3544e
> error: Failed dependencies:
>/bin/bash is needed by R-core-2.10.0-2.fc11.x86_64
>/bin/sh is needed by R-core-2.10.0-2.fc11.x86_64
>/sbin/ldconfig is needed by R-core-2.10.0-2.fc11.x86_64
>/usr/bin/perl is needed by R-core-2.10.0-2.fc11.x86_64
>cups is needed by R-core-2.10.0-2.fc11.x86_64
>gawk is needed by R-core-2.10.0-2.fc11.x86_64
>ld-linux-x86-64.so.2()(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>ld-linux-x86-64.so.2(GLIBC_2.2.5)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>less is needed by R-core-2.10.0-2.fc11.x86_64
>libICE.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libSM.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libX11.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libXmu.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libXt.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libbz2.so.1()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libc.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libc.so.6(GLIBC_2.2.5)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libc.so.6(GLIBC_2.3)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libc.so.6(GLIBC_2.3.4)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libc.so.6(GLIBC_2.4)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libc.so.6(GLIBC_2.7)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libc.so.6(GLIBC_2.8)(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libcairo.so.2()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libdl.so.2()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libdl.so.2(GLIBC_2.2.5)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libgcc_s.so.1()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libgfortran.so.3()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libgfortran.so.3(GFORTRAN_1.0)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libglib-2.0.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libgmodule-2.0.so.0()(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libgobject-2.0.so.0()(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libicui18n.so.40()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libicuuc.so.40()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libjpeg.so.62()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libm.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libm.so.6(GLIBC_2.2.5)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libpango-1.0.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libpangocairo-1.0.so.0()(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libpcre.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libpng12.so.0()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libpng12.so.0(PNG12_0)(64bit) is needed by
> R-core-2.10.0-2.fc11.x86_64
>libreadline.so.5()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libstdc++.so.6()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libtcl8.5.so()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libtiff.so.3()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libtk8.5.so()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>libz.so.1()(64bit) is needed by R-core-2.10.0-2.fc11.x86_64
>perl is needed by R-core-2.10.0-2.fc11.x86_64
>perl(Carp) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(Cwd) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(Exporter) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Basename) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Compare) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Copy) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Copy::Recursive) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Find) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Path) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(File::Spec) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(FileHandle) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(Getopt::Long) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(IO::File) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(Text::Tabs) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(Text::Wrap) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(strict) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(vars) is needed by R-core-2.10.0-2.fc11.x86_64
>perl(warnings) is needed by R-core-2.10.0-2.fc11

[R] Linux 64-bit R installation problem - "Failed dependencies"

[noclue_]

c11.x86_64
sed is needed by R-core-2.10.0-2.fc11.x86_64
texlive-dvips is needed by R-core-2.10.0-2.fc11.x86_64
texlive-latex is needed by R-core-2.10.0-2.fc11.x86_64
vi is needed by R-core-2.10.0-2.fc11.x86_64
xdg-utils is needed by R-core-2.10.0-2.fc11.x86_64 
-

Has anybody here encountered similar problem? How did you solve it?


Thanks!

-- 
View this message in context: 
http://r.789695.n4.nabble.com/Linux-64-bit-R-installation-problem-Failed-dependencies-tp2966385p2966385.html
Sent from the R help mailing list archive at Nabble.com.

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

Re: [R] Installation problem

[Erik Iverson]

Giovanni Petris wrote:
I am trying to install R-2.11.1 from sources on Ubuntu 10.04. 


Any particular reason? There are Ubuntu packages available...

I am

getting the following error when I run ./configure:

configure:6683: checking how to run the C preprocessor
configure:6753: result: gcc -E
configure:6773: gcc -E -I/usr/local/include conftest.c
configure:6773: $? = 0
configure:6787: gcc -E -I/usr/local/include conftest.c
conftest.c:17:28: error: ac_nonexistent.h: No such file or directory
<...other stuff here...>
 
Could anybody help me?


I am also attaching the file config.log for more info.

Thank you in advance,
Giovanni Petris





__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] Installation problem

[Giovanni Petris]

I am trying to install R-2.11.1 from sources on Ubuntu 10.04. I am
getting the following error when I run ./configure:

configure:6683: checking how to run the C preprocessor
configure:6753: result: gcc -E
configure:6773: gcc -E -I/usr/local/include conftest.c
configure:6773: $? = 0
configure:6787: gcc -E -I/usr/local/include conftest.c
conftest.c:17:28: error: ac_nonexistent.h: No such file or directory
<...other stuff here...>
 
Could anybody help me?

I am also attaching the file config.log for more info.

Thank you in advance,
Giovanni Petris

-- 

Giovanni Petris  
Associate Professor
Department of Mathematical Sciences
University of Arkansas - Fayetteville, AR 72701
Ph: (479) 575-6324, 575-8630 (fax)
http://definetti.uark.edu/~gpetris/
__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.

[R] Installation problem with "geepack"

[Xianming Tan]

Hi there, 

I just installed the package under windows, and it works very well. However, as 
I tried to install it on a cluster which uses linux OS,

"Linux lionxc.aset.psu.edu 2.6.18-194.el5 #1 SMP Tue Mar 16 21:52:39 EDT 2010 
x86_64 x86_64 x86_64 GNU/Linux"

I always failed.  The message during the installation process is as follows:

> install.packages("geepack")
Warning in install.packages("geepack") :
  argument 'lib' is missing: using '/gpfs/home/xzt1/work/my_Rlibs'
--- Please select a CRAN mirror for use in this session ---
CRAN mirror

Selection: 69
trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/geepack_1.0-17.tar.gz'
Content type 'application/x-gzip' length 166195 bytes (162 Kb)
opened URL
==
downloaded 162 Kb

* installing *source* package âgeepackâ ...
** libs
icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c famstr.cc -o famstr.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c gee2.cc -o gee2.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c geesubs.cc -o geesubs.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c inter.cc -o inter.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c ordgee.cc -o ordgee.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c param.cc -o param.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -I/usr/global/R/2.11.0/lib64/R/include -I../inst/include 
-I/usr/local/include  -mp  -fpic  -g -O2 -c utils.cc -o utils.o
icpc: command line remark #10010: option '-mp' is deprecated and will be 
removed in a future release. See '-help deprecated'
../inst/include/tnt/vec.h(152): warning #858: type qualifier on return type is 
meaningless
  const iterator begin() const { return v_;}
  ^

../inst/include/tnt/vec.h(153): warning #858: type qualifier on return type is 
meaningless
  const iterator end() const  { return v_ + n_; }
  ^

icpc -shared -i-dynamic -mieee-fp -prec-div -O2 
-axSSE2,SSE3,SSEE3,SSE4.1,SSE4.2,AVX -lpthread -o geepack.so famstr.o gee2.o 
geesubs.o inter.o ordgee.o param.o utils.o -L/usr/global/R/2.11.0/lib64/R/lib 
-lR -L/usr/global/hdf5/1.8.3/lib -Wl,-R/us

Re: [R] installation problem

[Michael Bibo]

Uwe Ligges  statistik.tu-dortmund.de> writes:

> or just say
> 
> install.packages("XML")
> 
> as that CRAN extras repository is already a default under Windows.
> 
> Best,
> Uwe Ligges
> 

Thanks, Uwe.  I had tried that, with no success.  It turned out that starting 
R with the "--internet2" option (chosen when installing R) was not working for 
me to allow access.  I hadn't realised this because installing packages from 
my national CRAN mirror did work, probably because the University that hosts 
it is on my organisation's list of allowed sites.  When I started R with my 
explicit proxy server address, username and password, "install.packages
("XML")" did indeed work.

Does this imply something about the usefulness of the "--internet2" option?

Michael

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Re: [R] installation problem

[Uwe Ligges]

Michael Bibo wrote:

cls59  sharpsteen.net> writes:



wesley mathew wrote:

Hello All

I have some problem for installing  XML_2.6-0.tar . I am working in widows
and R version is  R-2.9.1



Unfortunately, I think there are some problems with CRAN being able to build
the XML package for Windows, at least the page:

http://cran.r-project.org/web/packages/XML/index.html

Lists it as unavailable. However, I know I have installed it on a Windows
machine at the university using install.packages()-- R may be set up to pull
from some additional repository there. I'll check the next time I'm in the
lab.

-Charlie


As Charlie notes, the CRAN page lists the Windows version as unavailable, but
links to a README file which details:

>

Thus you can download the Windows zip file from there, and install it using the
"install package(s) from local zip files..." menu option.




or just say

install.packages("XML")

as that CRAN extras repository is already a default under Windows.

Best,
Uwe Ligges






Michael Bibo
Queensland Health

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Re: [R] installation problem

[Michael Bibo]

cls59  sharpsteen.net> writes:

> 
> 
> wesley mathew wrote:
> > 
> > Hello All
> > 
> > I have some problem for installing  XML_2.6-0.tar . I am working in widows
> > and R version is  R-2.9.1
> > 
> > 
> 
> Unfortunately, I think there are some problems with CRAN being able to build
> the XML package for Windows, at least the page:
> 
> http://cran.r-project.org/web/packages/XML/index.html
> 
> Lists it as unavailable. However, I know I have installed it on a Windows
> machine at the university using install.packages()-- R may be set up to pull
> from some additional repository there. I'll check the next time I'm in the
> lab.
> 
> -Charlie

As Charlie notes, the CRAN page lists the Windows version as unavailable, but
links to a README file which details:

>

Thus you can download the Windows zip file from there, and install it using the
"install package(s) from local zip files..." menu option.

Michael Bibo
Queensland Health

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Re: [R] installation problem

[cls59]

wesley mathew wrote:
> 
> Hello All
> 
> I have some problem for installing  XML_2.6-0.tar . I am working in widows
> and R version is  R-2.9.1
> 
> 

Unfortunately, I think there are some problems with CRAN being able to build
the XML package for Windows, at least the page:

http://cran.r-project.org/web/packages/XML/index.html

Lists it as unavailable. However, I know I have installed it on a Windows
machine at the university using install.packages()-- R may be set up to pull
from some additional repository there. I'll check the next time I'm in the
lab.

-Charlie

-
Charlie Sharpsteen
Undergraduate
Environmental Resources Engineering
Humboldt State University
-- 
View this message in context: 
http://www.nabble.com/installation-problem-tp25438411p25439211.html
Sent from the R help mailing list archive at Nabble.com.

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Re: [R] installation problem

[Paul Hiemstra]

wesley mathew wrote:

Hello All

I have some problem for installing  XML_2.6-0.tar . I am working in widows
and R version is  R-2.9.1
   >*install.packages("XML")*
After selecting a CRAN mirror
**
*Error :-* Warning: unable to access index for repository
http://cran.pt.r-project.org/bin/windows/contrib/2.9
Warning: unable to access index for repository
http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.9
Warning messages:
1: In open.connection(con, "r") :
  unable to connect to 'cran.r-project.org' on port 80.
2: In getDependencies(pkgs, dependencies, available, lib) :
  package ‘XML’ is not available
**
  

Hi,

Sounds like either:

- The mirror is broken, try a few others
- You are behind a proxy server, configure you machine to use the proxy 
server

  >*install.packages( "c:/program files/R/XML_2.6-0.tar.gz", type="source",
repos=NULL)*
*Error  :-*  'sh' is not recognized as an internal or external command,
operable program or batch file.
  
This doesn't work in windows if you have not installed the Rtools 
(http://www.murdoch-sutherland.com/Rtools/). Try to install those first, 
or download and install the windows binary version.


cheers,
Paul

Thanks in advance for your help

Kind Regards


  



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--
Drs. Paul Hiemstra
Department of Physical Geography
Faculty of Geosciences
University of Utrecht
Heidelberglaan 2
P.O. Box 80.115
3508 TC Utrecht
Phone:  +3130 274 3113 Mon-Tue
Phone:  +3130 253 5773 Wed-Fri
http://intamap.geo.uu.nl/~paul

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Re: [R] installation problem

[Uwe Ligges]

wesley mathew wrote:

Hello All

I have some problem for installing  XML_2.6-0.tar . I am working in widows
and R version is  R-2.9.1
   >*install.packages("XML")*
After selecting a CRAN mirror
**
*Error :-* Warning: unable to access index for repository
http://cran.pt.r-project.org/bin/windows/contrib/2.9
Warning: unable to access index for repository
http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.9
Warning messages:
1: In open.connection(con, "r") :
  unable to connect to 'cran.r-project.org' on port 80.
2: In getDependencies(pkgs, dependencies, available, lib) :
  package ‘XML’ is not available
**



Looks like you have some network problem and cannot access the 
repositories. Ask you local administrator for help.




  >*install.packages( "c:/program files/R/XML_2.6-0.tar.gz", type="source",
repos=NULL)*
*Error  :-*  'sh' is not recognized as an internal or external command,
operable program or batch file.



It is not straightforward nor very easy to install XML from sources.
You'd need a) the tools for compiling packages from source and even then 
you'd need b) to have additional software such as the XML sources and 
need to adapt some files in the XML package.


Uwe Ligges



Thanks in advance for your help

Kind Regards






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[R] installation problem

[wesley mathew]

Hello All

I have some problem for installing  XML_2.6-0.tar . I am working in widows
and R version is  R-2.9.1
   >*install.packages("XML")*
After selecting a CRAN mirror
**
*Error :-* Warning: unable to access index for repository
http://cran.pt.r-project.org/bin/windows/contrib/2.9
Warning: unable to access index for repository
http://www.stats.ox.ac.uk/pub/RWin/bin/windows/contrib/2.9
Warning messages:
1: In open.connection(con, "r") :
  unable to connect to 'cran.r-project.org' on port 80.
2: In getDependencies(pkgs, dependencies, available, lib) :
  package ‘XML’ is not available
**
  >*install.packages( "c:/program files/R/XML_2.6-0.tar.gz", type="source",
repos=NULL)*
*Error  :-*  'sh' is not recognized as an internal or external command,
operable program or batch file.

Thanks in advance for your help

Kind Regards


-- 
Wesley

[[alternative HTML version deleted]]

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[R] installation problem: package 'mgcv' could not be loaded

[Simon Zhu]

Hello all, i'm a newbie of R trying to make some statistical work in R 
environment. Now i have to laptops, one is Thinkpad X40 with Debian 
Lenny and the other is Thinkpad T43 with Ubuntu 8.10. Recently i met 
such problem and am wondering if anybody can do some help.


After upgrading my /etc/apt/sources.list , i install R by apt-get 
install command. It works fine in both laptops. Then i tried to install 
packages such as JGR and TSA. Problem occured when i installed TSA in my 
Ubuntu T43.


> install.packages('TSA')

and i get the following error message:

   Loading required package: leaps
   Loading required package: locfit
   Loading required package: akima
   Loading required package: lattice
   locfit 1.5-4  2007-11-27
   Loading required package: mgcv
   Error in dyn.load(file, DLLpath = DLLpath, ...) :
 unable to load shared library '/usr/lib/R/library/mgcv/libs/mgcv.so':
  libRlapack.so: cannot open shared object file: No such file or 
directory

Error: package 'mgcv' could not be loaded
Execution halted
ERROR: lazy loading failed for package 'TSA'
** Removing '/usr/local/lib/R/site-library/TSA'

The downloaded packages are in
   /tmp/RtmpClJMOJ/downloaded_packages
   Warning message:
   In install.packages("TSA") :
   installation of package 'TSA' had non-zero exit status

The problems is, i used exact the same commands and configuration of R 
in both my Debian-X40 and Ubuntu-T43. It works in Debian but not in T43. 
Anybody who can help me about how to fix it would be a lot appreciated. 
thanks !


--
---
Yanyuan Zhu
Doctoral Candidate
School of Economics & Management, Tongji University
MSN messenger: [EMAIL PROTECTED]
E-mail: [EMAIL PROTECTED]
BLOG http://yyzhu.net

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