Re: [R] Jaccard index
sreenath macfast.ac.in> writes: > > sim(file_name,method="jaccard") > this command is giving the raw wise similarity matrix > how can i find column wise similarity matrix? > what is the command? > please help me > Based on a search library("sos"); findFn("jaccard sim") I'm guessing that you're using the simba package (which you really should have said in your message ...). In general transposing the matrix sim(t(file_name),method="jaccard") should work. If you have ecology-related questions you might want to check out the r-sig-ecol...@r-project.org mailing list ... __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Jaccard index
sim(file_name,method="jaccard") this command is giving the raw wise similarity matrix how can i find column wise similarity matrix? what is the command? please help me -- View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-tp471.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Jaccard index
> On 15-07-2015, at 09:35, sreenath wrote: > > How can i find jaccard index of two groups,which package is to be used? > please help library(sos) findFn(“jaccard”) gives many links. Berend __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Jaccard index
Did you search the internet? At first attempt, vegdist {vegan}(worked well for me in the past) and dist.binary {ade4} seem to offer what you need. HTH, Michael > -Original Message- > From: R-help [mailto:r-help-boun...@r-project.org] On Behalf Of sreenath > Sent: Mittwoch, 15. Juli 2015 09:35 > To: r-help@r-project.org > Subject: [R] Jaccard index > > How can i find jaccard index of two groups,which package is to be used? > please help > > > > -- > View this message in context: http://r.789695.n4.nabble.com/Jaccard-index- > tp4709883.html > Sent from the R help mailing list archive at Nabble.com. > > __ > R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting- > guide.html > and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] Jaccard index
How can i find jaccard index of two groups,which package is to be used? please help -- View this message in context: http://r.789695.n4.nabble.com/Jaccard-index-tp4709883.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.