[R] OS X binary: 32 or 64-bit?

2008-01-10 Thread Robert Terwilliger
Dear R Experts,

I am using R.app (the Mac OS X binary) for neuroimage analysis, so I
am loading in some large image files. I get the following error in the
middle of my script:

 source(3dLME.R)
Read 1 record
Read 1 record
Read 1 record
Read 1 record
Read 1 record
Error: cannot allocate vector of size 3.1 Gb
R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed
(error code=3)
R(2081,0xa000d000) malloc: *** error: can't allocate region
R(2081,0xa000d000) malloc: *** set a breakpoint in szone_error to debug
R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed
(error code=3)
R(2081,0xa000d000) malloc: *** error: can't allocate region
R(2081,0xa000d000) malloc: *** set a breakpoint in szone_error to debug

My Mac is 64-bit, however, I'm wondering if R is compiled as a 32-bit app?

Many thanks,

Robert Terwilliger

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Re: [R] OS X binary: 32 or 64-bit?

2008-01-10 Thread Charles C. Berry

Robert,

If you downloaded the binary from CRAN, it uses a 32-bit address space.

Here are some links that may help with getting a 64-bit build:

http://article.gmane.org/gmane.comp.lang.r.mac/2226
http://r.research.att.com/

Also, there is a list for MACs

https://stat.ethz.ch/mailman/listinfo/r-sig-mac

HTH,

Chuck

On Thu, 10 Jan 2008, Robert Terwilliger wrote:

 Dear R Experts,

 I am using R.app (the Mac OS X binary) for neuroimage analysis, so I
 am loading in some large image files. I get the following error in the
 middle of my script:

 source(3dLME.R)
 Read 1 record
 Read 1 record
 Read 1 record
 Read 1 record
 Read 1 record
 Error: cannot allocate vector of size 3.1 Gb
 R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed
 (error code=3)
 R(2081,0xa000d000) malloc: *** error: can't allocate region
 R(2081,0xa000d000) malloc: *** set a breakpoint in szone_error to debug
 R(2081,0xa000d000) malloc: *** vm_allocate(size=3321675776) failed
 (error code=3)
 R(2081,0xa000d000) malloc: *** error: can't allocate region
 R(2081,0xa000d000) malloc: *** set a breakpoint in szone_error to debug

 My Mac is 64-bit, however, I'm wondering if R is compiled as a 32-bit app?

 Many thanks,

 Robert Terwilliger

 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.


Charles C. Berry(858) 534-2098
 Dept of Family/Preventive Medicine
E mailto:[EMAIL PROTECTED]  UC San Diego
http://famprevmed.ucsd.edu/faculty/cberry/  La Jolla, San Diego 92093-0901

__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.