Re: [R] R CMD check problem
On 03/08/2011 12:47 PM, Baidya Nath Mandal wrote: Dear Murdoch, After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got following message: * installing *source* package 'mypackage' ... ** libs ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.Rcheck/mypackage' The log file contained following. * using log directory 'C:/Rpackages/mypackage.Rcheck' * using R version 2.13.0 (2011-04-13) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mypackage/DESCRIPTION' ... OK * this is package 'mypackage' version '1.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking for executable files ... OK * checking whether package 'mypackage' can be installed ... ERROR Installation failed. See 'C:/Rpackages/mypackage.Rcheck/00install.out' for details. The src directory contains nothing since all my codes are in R and are in the R directory. I have checked that the code works fine in R console. My DESCRIPTION file is like this: Package: mypackage Version: 1.1 Date: 2011-07-14 Title: abcd Author: B N Mandalmandal.s...@gmail.com Maintainer: B N Mandalmandal.s...@gmail.com Depends: R(= 2.13.0) Description: xyz License: GPL (=2) and NAMESPACE file contains export(fun1) I have checked Rd files are fine. Can you suggest what may be wrong now? You should delete your src directory if you don't need it. Duncan Murdoch regards, BN Mandal On Tue, Aug 2, 2011 at 4:17 PM, Duncan Murdochmurdoch.dun...@gmail.comwrote: On 11-08-02 5:26 AM, Baidya Nath Mandal wrote: Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/**i386/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~**1.0/etc/i386/Makeconf CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-**net/using.html#using-pathnameshttp://cygwin.com/cygwin-ug-net/using.html#using-pathnames I believe that warning is ignorable, but you can turn it off using set CYGWIN=nodosfilewarning It probably didn't cause the error below. ERROR: compilation failed for package 'mypackage' I don't know what did cause that error, but it's likely something in your src directory of the package. What do you have there? Duncan Murdoch * removing 'C:/Rpackages/mypackage.**Rcheck/mypackage'. What I understood from above is that it is something with PATH variable. I had set the following PATH variable: C:\Rtools\bin;C:\Rtools\MinGW\**bin;C:\Program Files\R\R-2.13.0\bin;C:\**Program Files\MiKTeX 2.9\miktex\bin;%SystemRoot%\**system32;%SystemRoot%;%** SystemRoot%\System32\Wbem;%**SYSTEMROOT%\System32\** WindowsPowerShell\v1.0\;C:\**Program Files\HTML Help Workshop Can anybody suggest what possibly could have gone wrong? Thanks, BN Mandal [[alternative HTML version deleted]] __** R-help@r-project.org mailing list https://stat.ethz.ch/mailman/**listinfo/r-helphttps://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/** posting-guide.htmlhttp://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R CMD check problem
Dear Murdoch, After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got following message: * installing *source* package 'mypackage' ... ** libs ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.Rcheck/mypackage' The log file contained following. * using log directory 'C:/Rpackages/mypackage.Rcheck' * using R version 2.13.0 (2011-04-13) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mypackage/DESCRIPTION' ... OK * this is package 'mypackage' version '1.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking for executable files ... OK * checking whether package 'mypackage' can be installed ... ERROR Installation failed. See 'C:/Rpackages/mypackage.Rcheck/00install.out' for details. The src directory contains nothing since all my codes are in R and are in the R directory. I have checked that the code works fine in R console. My DESCRIPTION file is like this: Package: mypackage Version: 1.1 Date: 2011-07-14 Title: abcd Author: B N Mandal mandal.s...@gmail.com Maintainer: B N Mandal mandal.s...@gmail.com Depends: R(= 2.13.0) Description: xyz License: GPL (=2) and NAMESPACE file contains export(fun1) I have checked Rd files are fine. Can you suggest what may be wrong now? regards, BN Mandal On Tue, Aug 2, 2011 at 4:17 PM, Duncan Murdoch murdoch.dun...@gmail.comwrote: On 11-08-02 5:26 AM, Baidya Nath Mandal wrote: Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/**i386/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~**1.0/etc/i386/Makeconf CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-**net/using.html#using-pathnameshttp://cygwin.com/cygwin-ug-net/using.html#using-pathnames I believe that warning is ignorable, but you can turn it off using set CYGWIN=nodosfilewarning It probably didn't cause the error below. ERROR: compilation failed for package 'mypackage' I don't know what did cause that error, but it's likely something in your src directory of the package. What do you have there? Duncan Murdoch * removing 'C:/Rpackages/mypackage.**Rcheck/mypackage'. What I understood from above is that it is something with PATH variable. I had set the following PATH variable: C:\Rtools\bin;C:\Rtools\MinGW\**bin;C:\Program Files\R\R-2.13.0\bin;C:\**Program Files\MiKTeX 2.9\miktex\bin;%SystemRoot%\**system32;%SystemRoot%;%** SystemRoot%\System32\Wbem;%**SYSTEMROOT%\System32\** WindowsPowerShell\v1.0\;C:\**Program Files\HTML Help Workshop Can anybody suggest what possibly could have gone wrong? Thanks, BN Mandal [[alternative HTML version deleted]] __** R-help@r-project.org mailing list https://stat.ethz.ch/mailman/**listinfo/r-helphttps://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/** posting-guide.html http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R CMD check problem
Many many thanks, working now. Best, BN Mandal On Wed, Aug 3, 2011 at 10:34 PM, Duncan Murdoch murdoch.dun...@gmail.comwrote: On 03/08/2011 12:47 PM, Baidya Nath Mandal wrote: Dear Murdoch, After setting CYGWIN=nodosfilewarning, i re-ran the R CMD check and got following message: * installing *source* package 'mypackage' ... ** libs ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.**Rcheck/mypackage' The log file contained following. * using log directory 'C:/Rpackages/mypackage.**Rcheck' * using R version 2.13.0 (2011-04-13) * using platform: i386-pc-mingw32 (32-bit) * using session charset: ISO8859-1 * checking for file 'mypackage/DESCRIPTION' ... OK * this is package 'mypackage' version '1.1' * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking for executable files ... OK * checking whether package 'mypackage' can be installed ... ERROR Installation failed. See 'C:/Rpackages/mypackage.**Rcheck/00install.out' for details. The src directory contains nothing since all my codes are in R and are in the R directory. I have checked that the code works fine in R console. My DESCRIPTION file is like this: Package: mypackage Version: 1.1 Date: 2011-07-14 Title: abcd Author: B N Mandalmandal.s...@gmail.com Maintainer: B N Mandalmandal.s...@gmail.com Depends: R(= 2.13.0) Description: xyz License: GPL (=2) and NAMESPACE file contains export(fun1) I have checked Rd files are fine. Can you suggest what may be wrong now? You should delete your src directory if you don't need it. Duncan Murdoch regards, BN Mandal On Tue, Aug 2, 2011 at 4:17 PM, Duncan Murdochmurdoch.duncan@gmail.**commurdoch.dun...@gmail.com wrote: On 11-08-02 5:26 AM, Baidya Nath Mandal wrote: Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/ i386/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnameshttp://cygwin.com/cygwin-ug-**net/using.html#using-pathnames **http://cygwin.com/cygwin-ug-**net/using.html#using-pathnameshttp://cygwin.com/cygwin-ug-net/using.html#using-pathnames ** I believe that warning is ignorable, but you can turn it off using set CYGWIN=nodosfilewarning It probably didn't cause the error below. ERROR: compilation failed for package 'mypackage' I don't know what did cause that error, but it's likely something in your src directory of the package. What do you have there? Duncan Murdoch * removing 'C:/Rpackages/mypackage.Rcheck/mypackage'. What I understood from above is that it is something with PATH variable. I had set the following PATH variable: C:\Rtools\bin;C:\Rtools\MinGW\bin;C:\Program Files\R\R-2.13.0\bin;C:\Program Files\MiKTeX 2.9\miktex\bin;%SystemRoot%\system32;%SystemRoot%;%** SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\** WindowsPowerShell\v1.0\;C:\Program Files\HTML Help Workshop Can anybody suggest what possibly could have gone wrong? Thanks, BN Mandal [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-helphttps://stat.ethz.ch/mailman/**listinfo/r-help https://stat.**ethz.ch/mailman/listinfo/r-**helphttps://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/** posting-guide.htmlhttp://www.**R-project.org/posting-guide.**htmlhttp://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] R CMD check problem
Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.Rcheck/mypackage'. What I understood from above is that it is something with PATH variable. I had set the following PATH variable: C:\Rtools\bin;C:\Rtools\MinGW\bin;C:\Program Files\R\R-2.13.0\bin;C:\Program Files\MiKTeX 2.9\miktex\bin;%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;C:\Program Files\HTML Help Workshop Can anybody suggest what possibly could have gone wrong? Thanks, BN Mandal [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R CMD check problem
On 11-08-02 5:26 AM, Baidya Nath Mandal wrote: Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames I believe that warning is ignorable, but you can turn it off using set CYGWIN=nodosfilewarning It probably didn't cause the error below. ERROR: compilation failed for package 'mypackage' I don't know what did cause that error, but it's likely something in your src directory of the package. What do you have there? Duncan Murdoch * removing 'C:/Rpackages/mypackage.Rcheck/mypackage'. What I understood from above is that it is something with PATH variable. I had set the following PATH variable: C:\Rtools\bin;C:\Rtools\MinGW\bin;C:\Program Files\R\R-2.13.0\bin;C:\Program Files\MiKTeX 2.9\miktex\bin;%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;C:\Program Files\HTML Help Workshop Can anybody suggest what possibly could have gone wrong? Thanks, BN Mandal [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] R CMD check problem
The cygwin warning should not be fatal. Is that what made you think there's a problem with your path? Can you upload mypackage online? Two options would be Github hosts that sort of thing or you could use a tar ball and any file hosting service. I (and possibly others more skilled) would be happy to try it on my system if I had it. You should also be able to see exactly where in the build process it failed from the log. Cheers, Josh On Aug 2, 2011, at 2:26, Baidya Nath Mandal mandal.s...@gmail.com wrote: Dear friends, I am building an R package called *mypackage*. I followed every possible steps (to my understanding) for the same. I got following problem while doing *R CMD check mypackage*. * installing *source* package 'mypackage' ... ** libs cygwin warning: MS-DOS style path detected: C:/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf Preferred POSIX equivalent is: /cygdrive/c/PROGRA~1/R/R-213~1.0/etc/i386/Makeconf CYGWIN environment variable option nodosfilewarning turns off this warning. Consult the user's guide for more details about POSIX paths: http://cygwin.com/cygwin-ug-net/using.html#using-pathnames ERROR: compilation failed for package 'mypackage' * removing 'C:/Rpackages/mypackage.Rcheck/mypackage'. What I understood from above is that it is something with PATH variable. I had set the following PATH variable: C:\Rtools\bin;C:\Rtools\MinGW\bin;C:\Program Files\R\R-2.13.0\bin;C:\Program Files\MiKTeX 2.9\miktex\bin;%SystemRoot%\system32;%SystemRoot%;%SystemRoot%\System32\Wbem;%SYSTEMROOT%\System32\WindowsPowerShell\v1.0\;C:\Program Files\HTML Help Workshop Can anybody suggest what possibly could have gone wrong? Thanks, BN Mandal [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
