[R] R and McAfee 8.5

2009-05-11 Thread Joyce, Warren
Hi,

I have been working with R for the last year and using the UKFSST package to 
look at satellite tag track data and SST information. Fpr those not familiar, 
the package uses the positions estimated by the satellite tags themselves and 
the associated SST data from servers (in this case, from the University of 
Hawaii and the NOAA Coastwatch website) for the time preiod to estimate a 
reasonable track the animal took while it was at liberty.  I'm currently having 
trouble downloading data from two different servers which I never had a problem 
before I recevied an upgraded computer with McAfee 8.5. When the package goes 
to the various servers for SST information to download, I continue to get a 
message in R:

trying URL 
'http://coastwatch.pfeg.noaa.gov/coastwatch/CWBrowserWW360.jsp?get=gridDatadataSet=TAGsstatimePeriod=3daycenteredTime=~2007-09-17T12%3A00%3A00maxLat=61.5minLon=295.06296maxLon=301.37891minLat=36filetype=.xyz'
Error in download.file(link, dest, mode = wb) : 
  cannot open URL 
'http://coastwatch.pfeg.noaa.gov/coastwatch/CWBrowserWW360.jsp?get=gridDatadataSet=TAGsstatimePeriod=3daycenteredTime=~2007-09-17T12%3A00%3A00maxLat=61.5minLon=295.06296maxLon=301.37891minLat=36filetype=.xyz'
In addition: Warning messages:
1: In dir.create(folder) :
  'C:\DOCUME~1\Joycew\LOCALS~1\Temp\Rtmp0DilA3\sst_temp' already exists
2: In download.file(link, dest, mode = wb) :
  cannot open: HTTP status was '404 Not Found'

I get a similar message when trying to access SST data from University of 
Hawaii 

trying URL 
'http://atlas.nmfs.hawaii.edu/cgi-bin/reynolds_extract.py?lon1=295.06296lon2=301.37891lat1=37lat2=64.5year1=2007day1=259year2=2007day2=355'
Error in download.file(link, dest, mode = wb) : 
  cannot open URL 
'http://atlas.nmfs.hawaii.edu/cgi-bin/reynolds_extract.py?lon1=295.06296lon2=301.37891lat1=37lat2=64.5year1=2007day1=259year2=2007day2=355'
In addition: Warning message:
In download.file(link, dest, mode = wb) :
  cannot open: HTTP status was '404 Not Found'

If I copy and paste the above url's 
http://coastwatch.pfeg.noaa.gov/coastwatch/CWBrowserWW360.jsp?get=gridDatadataSet=TAGsstatimePeriod=3daycenteredTime=~2007-09-17T12%3A00%3A00maxLat=61.5minLon=295.06296maxLon=301.37891minLat=36filetype=.xyz

Into my web browser, I get prompted with a file download window which quickly 
downloads an empty file. It looks like the data is available, I just can't seem 
to download it.

I've deduced that it must be a problem with the new firewall features of McAfee 
8.5 and was wondering if anyone else has run into a problem like this. I've 
tried using the exclusions options in 8.5 to exclude any R files but have come 
up empty handed. Still waiting on our informatics division to try and solve the 
problem as well but I thought I might try asking here as well.

Thanks and I appreciate any assistance!

Warren N. Joyce 
e-mail/courriel: warren.jo...@dfo-mpo.gc.ca  (new address)

Shark Technician/Technicien spécialiste du requin
ph/tél: 902-426-6382
laboratory: 902-426-1846
fax/téléc: 902-426-1506

Bedford Institute of Oceanography
1 Challenger Drive
P.O. Box 1006
Dartmouth, Nova Scotia 
Canada, B2Y 4A2

Institut Océanographique de Bedford
1, promenade Challenger
C.P. 1006
Dartmouth, Nouvelle-Écosse 
Canada, B2Y 4A2

Shark Website 
http://marinebiodiversity.ca/shark/
Otolith Website
http://marinebiodiversity.ca/otolith/
Skate Website
http://www.marinebiodiversity.ca/skatesandrays/index.htm



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Re: [R] R and McAfee 8.5

2009-05-11 Thread Bernardo Rangel Tura
On Mon, 2009-05-11 at 09:54 -0300, Joyce, Warren wrote:
 Hi,
 
 I have been working with R for the last year and using the UKFSST package to 
 look at satellite tag track data and SST information. Fpr those not familiar, 
 the package uses the positions estimated by the satellite tags themselves and 
 the associated SST data from servers (in this case, from the University of 
 Hawaii and the NOAA Coastwatch website) for the time preiod to estimate a 
 reasonable track the animal took while it was at liberty.  I'm currently 
 having trouble downloading data from two different servers which I never had 
 a problem before I recevied an upgraded computer with McAfee 8.5. When the 
 package goes to the various servers for SST information to download, I 
 continue to get a message in R:
 
(...)
 Into my web browser, I get prompted with a file download window which quickly 
 downloads an empty file. It looks like the data is available, I just can't 
 seem to download it.
 
 I've deduced that it must be a problem with the new firewall features of 
 McAfee 8.5 and was wondering if anyone else has run into a problem like this. 
 I've tried using the exclusions options in 8.5 to exclude any R files but 
 have come up empty handed. Still waiting on our informatics division to try 
 and solve the problem as well but I thought I might try asking here as well.
 
 Thanks and I appreciate any assistance!
 
 Warren N. Joyce 

Hi Joice,

In my opinion you need think about 2 things.

1- This is a problem of McAfee 8.5 not a R problem, so do you contact a
McAfee support for fix this problem ?

2- I presume  you use a windows but i do know your version (XP or Vista
or win 95 etc) neither your R configuration (do you use R --internet2
or not?)
-- 
Bernardo Rangel Tura, M.D,MPH,Ph.D
National Institute of Cardiology
Brazil

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https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.