[R] RPM-style install (SLED 10.1)
I am trying to install R on a SLED 10.1 machine. R-base-2.7.0-7.1-i586.rpm fails with [EMAIL PROTECTED]:~/RPMs rpm -Uvh R-base-2.7.0-7.1.i586.rpm warning: R-base-2.7.0-7.1.i586.rpm: Header V3 DSA signature: NOKEY, key ID 14ec5930 error: Failed dependencies: libgfortran.so.1 is needed by R-base-2.7.0-7.1.i586 I tried to trick it into believing there's the library by setting up the link: [EMAIL PROTECTED]:~/RPMs ls -l /usr/lib/libgf* lrwxrwxrwx 1 root root 29 2008-05-08 17:45 /usr/lib/libgfortran.so.1 - /usr/lib/libgfortran.so.3.0.0 lrwxrwxrwx 1 root root 20 2008-05-08 17:37 /usr/lib/libgfortran.so.3 - libgfortran.so.3.0.0 -rwxr-xr-x 1 root root 2251139 2008-05-01 09:43 /usr/lib/libgfortran.so.3.0.0 but that did not work, either. I went on and installed GCC's gfortran, but it did not provide libgfortran.so.1 either: [EMAIL PROTECTED]:~/RPMs ls -l /usr/irun/lib/libgf* -rw-r--r-- 1 1005 1011 4330512 2008-03-02 02:29 /usr/irun/lib/libgfortran.a -rwxr-xr-x 1 1005 10111009 2008-03-02 02:29 /usr/irun/lib/libgfortran.la -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so.3 -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so.3.0.0 Any reason R wants that package instead of the newer one? Of course rpm --nodeps was an option, but then it fails to load r-stats with the same message about the missing library: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/usr/lib/R/library/stats/libs/stats.so': /usr/lib/R/library/stats/libs/stats.so: undefined symbol: _gfortran_pow_r8_i4 During startup - Warning message: package stats in options(defaultPackages) was not found I am stuck... I am trying to compile R from 2.6.2 sources in the meantime, but that's painful for a Linux newbie like me on a brand-new computer that does not necessarily have all the packages. I almost want to switch to Ubuntu as R installation back there was a single click :)) -- Stas Kolenikov, also found at http://stas.kolenikov.name Small print: Please do not reply to my Gmail address as I don't check it regularly. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RPM-style install (SLED 10.1)
Stas, this doesn't solve your problem but may shed some light on what might have gone wrong. Just recently I installed R 2.7.0 under openSuse 10.3 in a brand new 64-bit Lenovo ThinkPad. The first install failed because of a dependency error just like yours. It complained it couldn't find BLAS and libgfortran. I then got on the varous repositories and installed a couple flavours (don't remember how many) of fortran and finally it went through. Right now, in my /usr/lib64, i have libgfortran.so.2.0.0. HTH. Horace -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Stas Kolenikov Sent: Monday, May 12, 2008 7:33 AM To: r-help@r-project.org Subject: [R] RPM-style install (SLED 10.1) I am trying to install R on a SLED 10.1 machine. R-base-2.7.0-7.1-i586.rpm fails with [EMAIL PROTECTED]:~/RPMs rpm -Uvh R-base-2.7.0-7.1.i586.rpm warning: R-base-2.7.0-7.1.i586.rpm: Header V3 DSA signature: NOKEY, key ID 14ec5930 error: Failed dependencies: libgfortran.so.1 is needed by R-base-2.7.0-7.1.i586 I tried to trick it into believing there's the library by setting up the link: [EMAIL PROTECTED]:~/RPMs ls -l /usr/lib/libgf* lrwxrwxrwx 1 root root 29 2008-05-08 17:45 /usr/lib/libgfortran.so.1 - /usr/lib/libgfortran.so.3.0.0 lrwxrwxrwx 1 root root 20 2008-05-08 17:37 /usr/lib/libgfortran.so.3 - libgfortran.so.3.0.0 -rwxr-xr-x 1 root root 2251139 2008-05-01 09:43 /usr/lib/libgfortran.so.3.0.0 but that did not work, either. I went on and installed GCC's gfortran, but it did not provide libgfortran.so.1 either: [EMAIL PROTECTED]:~/RPMs ls -l /usr/irun/lib/libgf* -rw-r--r-- 1 1005 1011 4330512 2008-03-02 02:29 /usr/irun/lib/libgfortran.a -rwxr-xr-x 1 1005 10111009 2008-03-02 02:29 /usr/irun/lib/libgfortran.la -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so.3 -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so.3.0.0 Any reason R wants that package instead of the newer one? Of course rpm --nodeps was an option, but then it fails to load r-stats with the same message about the missing library: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/usr/lib/R/library/stats/libs/stats.so': /usr/lib/R/library/stats/libs/stats.so: undefined symbol: _gfortran_pow_r8_i4 During startup - Warning message: package stats in options(defaultPackages) was not found I am stuck... I am trying to compile R from 2.6.2 sources in the meantime, but that's painful for a Linux newbie like me on a brand-new computer that does not necessarily have all the packages. I almost want to switch to Ubuntu as R installation back there was a single click :)) -- Stas Kolenikov, also found at http://stas.kolenikov.name Small print: Please do not reply to my Gmail address as I don't check it regularly. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RPM-style install (SLED 10.1)
That's what I ended up doing. I've had complaints about blas, too, but I rpm-ed them out with --nodeps. I've compiled R from the sources (I had to add some -devel- packages, too), and then copied over the stats.*.so library from my fully successful 2.6.2 compilation to semi-successful 2.7.0 installation. So I cannot actually tell if I have 2.7.0 or 2.6.2 on this computer... and I don't know if any other problems may appear later. And yes I have a ThinkPad although it is 32 bit. On 5/12/08, Horace Tso [EMAIL PROTECTED] wrote: Stas, this doesn't solve your problem but may shed some light on what might have gone wrong. Just recently I installed R 2.7.0 under openSuse 10.3 in a brand new 64-bit Lenovo ThinkPad. The first install failed because of a dependency error just like yours. It complained it couldn't find BLAS and libgfortran. I then got on the varous repositories and installed a couple flavours (don't remember how many) of fortran and finally it went through. Right now, in my /usr/lib64, i have libgfortran.so.2.0.0. -Original Message- From: [EMAIL PROTECTED] [mailto:[EMAIL PROTECTED] On Behalf Of Stas Kolenikov Sent: Monday, May 12, 2008 7:33 AM To: r-help@r-project.org Subject: [R] RPM-style install (SLED 10.1) I am trying to install R on a SLED 10.1 machine. R-base-2.7.0-7.1-i586.rpm fails with [EMAIL PROTECTED]:~/RPMs rpm -Uvh R-base-2.7.0-7.1.i586.rpm warning: R-base-2.7.0-7.1.i586.rpm: Header V3 DSA signature: NOKEY, key ID 14ec5930 error: Failed dependencies: libgfortran.so.1 is needed by R-base-2.7.0-7.1.i586 I tried to trick it into believing there's the library by setting up the link: [EMAIL PROTECTED]:~/RPMs ls -l /usr/lib/libgf* lrwxrwxrwx 1 root root 29 2008-05-08 17:45 /usr/lib/libgfortran.so.1 - /usr/lib/libgfortran.so.3.0.0 lrwxrwxrwx 1 root root 20 2008-05-08 17:37 /usr/lib/libgfortran.so.3 - libgfortran.so.3.0.0 -rwxr-xr-x 1 root root 2251139 2008-05-01 09:43 /usr/lib/libgfortran.so.3.0.0 but that did not work, either. I went on and installed GCC's gfortran, but it did not provide libgfortran.so.1 either: [EMAIL PROTECTED]:~/RPMs ls -l /usr/irun/lib/libgf* -rw-r--r-- 1 1005 1011 4330512 2008-03-02 02:29 /usr/irun/lib/libgfortran.a -rwxr-xr-x 1 1005 10111009 2008-03-02 02:29 /usr/irun/lib/libgfortran.la -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so.3 -rwxr-xr-x 1 1005 1011 2509309 2008-03-02 02:29 /usr/irun/lib/libgfortran.so.3.0.0 Any reason R wants that package instead of the newer one? Of course rpm --nodeps was an option, but then it fails to load r-stats with the same message about the missing library: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/usr/lib/R/library/stats/libs/stats.so': /usr/lib/R/library/stats/libs/stats.so: undefined symbol: _gfortran_pow_r8_i4 During startup - Warning message: package stats in options(defaultPackages) was not found I am stuck... I am trying to compile R from 2.6.2 sources in the meantime, but that's painful for a Linux newbie like me on a brand-new computer that does not necessarily have all the packages. I almost want to switch to Ubuntu as R installation back there was a single click :)) -- Stas Kolenikov, also found at http://stas.kolenikov.name Small print: Please do not reply to my Gmail address as I don't check it regularly. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Stas Kolenikov, also found at http://stas.kolenikov.name Small print: Please do not reply to my Gmail address as I don't check it regularly. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
