Re: [R] Unicode chars
Thank you for the reply I tried xeLatex at least once and possibly twice
and it failed to compile
I now tried it again and found that I had missed the inputenc error when
I tried before.
After removing the line it now compiles.
Thank you
Regards
Duncan
-- Original Message --
From: "Jeff Newmiller"
To: r-help@r-project.org; "dulcalma dulcalma" ;
r-help@R-project.org
Sent: Thursday, 25 Aug, 2022 At 1:25 PM
Subject: Re: [R] Unicode chars
Are you aware that pdfLatex does not support Unicode? You need to use
xeLatex. But I don't use Sweave, so I don't know how you go about making
that choice.
On August 24, 2022 8:03:02 PM PDT, dulcalma dulcalma
wrote:
Dear All
I was trying the supplementary file GS_main.R from
https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475
I have tried to prevent latex compilation from failing using Sweave
after trying all the online fixes I could find including using Rterm
I could fix it if it was in the input but not in the output
I am using R version 4.2 on windows 11 with 64 GB memory
Sweave code
\begin{small}
<>=
library(emdbook) # version 1.3.12
library(bbmle) # version 1.0.23.1
library(pbmcapply) # version 1.5.0
library(tidyverse) # version 1.3.0
library(ggpubr) # version 0.4.0
@ %%
<>=
summaryTable <-
tibble(model = m.names,
dim = m.dims[model],
score = m.loo[model],
delScore = score - min(score),
se_ose = se_ose[model],
se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
1:length(dim))
summaryTable
@ %%
Output
\begin{Schunk}
\begin{Sinput}
summaryTable <-
tibble(model = m.names,
dim = m.dims[model],
score = m.loo[model],
delScore = score - min(score),
se_ose = se_ose[model],
se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
1:length(dim))
summaryTable
\end{Sinput}
\begin{Soutput}
# A tibble: 10 × 7
model dim score delScore se_ose se_mod index
1 zero 2 908. 5.84 40.1 4.14 1
2 d 3 904. 1.71 40.6 2.52 2
3 q 3 907. 4.92 40.2 3.80 3
4 qd 4 902. 0 40.7 0 4
5 qdi 5 903. 0.632 40.5 1.60 5
6 x 6 908. 5.58 40.2 5.53 6
7 xq 7 907. 4.81 40.3 5.36 7
8 xd 7 905. 2.96 40.5 5.04 8
9 xqd 8 903. 0.908 40.5 4.52 9
10 xqdi 9 904. 1.89 40.4 4.70 10
\end{Soutput}
\end{Schunk}
The problem is the output from tibble
# A tibble: 10 × 7
the \times character is Unicode U+00D7 or hex \xd7 and pdflatex
lualatex etc fail where this occurs
Is there a way of adding "sanitizing" code in the output before
compiling
Or do I have to change it manually before compiling
I do not want to switch to knitr.
Regards
Duncan Mackay
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
--
Sent from my phone. Please excuse my brevity.
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Unicode chars
PDFLaTeX does support Latin-1, and this is a Latin-1
character.
On Thu, 25 Aug 2022 at 15:35, Jeff Newmiller
wrote:
> Are you aware that pdfLatex does not support Unicode? You need to use
> xeLatex. But I don't use Sweave, so I don't know how you go about making
> that choice.
>
> On August 24, 2022 8:03:02 PM PDT, dulcalma dulcalma
> wrote:
> >
> >Dear All
> >
> >
> >I was trying the supplementary file GS_main.R from
> >https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475
> >
> >I have tried to prevent latex compilation from failing using Sweave
> >after trying all the online fixes I could find including using Rterm
> >I could fix it if it was in the input but not in the output
> >I am using R version 4.2 on windows 11 with 64 GB memory
> >
> >
> >Sweave code
> >
> >\begin{small}
> ><>=
> >library(emdbook) # version 1.3.12
> >library(bbmle) # version 1.0.23.1
> >library(pbmcapply) # version 1.5.0
> >library(tidyverse) # version 1.3.0
> >library(ggpubr) # version 0.4.0
> >@ %%
> >
> >
> ><>=
> >summaryTable <-
> >tibble(model = m.names,
> > dim = m.dims[model],
> > score = m.loo[model],
> > delScore = score - min(score),
> > se_ose = se_ose[model],
> > se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
> >1:length(dim))
> >summaryTable
> >@ %%
> >
> >
> >Output
> >\begin{Schunk}
> >\begin{Sinput}
> > summaryTable <-
> > tibble(model = m.names,
> > dim = m.dims[model],
> > score = m.loo[model],
> > delScore = score - min(score),
> > se_ose = se_ose[model],
> > se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
> >1:length(dim))
> > summaryTable
> >\end{Sinput}
> >\begin{Soutput}
> ># A tibble: 10 × 7
> > model dim score delScore se_ose se_mod index
> >
> > 1 zero 2 908.5.8440.1 4.14 1
> > 2 d 3 904.1.7140.6 2.52 2
> > 3 q 3 907.4.9240.2 3.80 3
> > 4 qd4 902.0 40.7 04
> > 5 qdi 5 903.0.632 40.5 1.60 5
> > 6 x 6 908.5.5840.2 5.53 6
> > 7 xq7 907.4.8140.3 5.36 7
> > 8 xd7 905.2.9640.5 5.04 8
> > 9 xqd 8 903.0.908 40.5 4.52 9
> >10 xqdi 9 904.1.8940.4 4.7010
> >\end{Soutput}
> >\end{Schunk}
> >
> >
> >The problem is the output from tibble
> ># A tibble: 10 × 7
> >
> >
> >the \times character is Unicode U+00D7 or hex \xd7 and pdflatex lualatex
> >etc fail where this occurs
> >Is there a way of adding "sanitizing" code in the output before
> >compiling
> >Or do I have to change it manually before compiling
> >
> >
> >I do not want to switch to knitr.
> >
> >
> >Regards
> >
> >
> >Duncan Mackay
> >
> >
> >
> > [[alternative HTML version deleted]]
> >
> >__
> >R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> >https://stat.ethz.ch/mailman/listinfo/r-help
> >PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> >and provide commented, minimal, self-contained, reproducible code.
>
> --
> Sent from my phone. Please excuse my brevity.
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Unicode chars
On Thu, 25 Aug 2022, dulcalma dulcalma writes:
> Dear All
>
>
> I was trying the supplementary file GS_main.R from
> https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475
>
> I have tried to prevent latex compilation from failing using Sweave
> after trying all the online fixes I could find including using Rterm
> I could fix it if it was in the input but not in the output
> I am using R version 4.2 on windows 11 with 64 GB memory
>
>
> Sweave code
>
> \begin{small}
> <>=
> library(emdbook) # version 1.3.12
> library(bbmle) # version 1.0.23.1
> library(pbmcapply) # version 1.5.0
> library(tidyverse) # version 1.3.0
> library(ggpubr) # version 0.4.0
> @ %%
>
>
> <>=
> summaryTable <-
> tibble(model = m.names,
> dim = m.dims[model],
> score = m.loo[model],
> delScore = score - min(score),
> se_ose = se_ose[model],
> se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
> 1:length(dim))
> summaryTable
> @ %%
>
>
> Output
> \begin{Schunk}
> \begin{Sinput}
> summaryTable <-
> tibble(model = m.names,
> dim = m.dims[model],
> score = m.loo[model],
> delScore = score - min(score),
> se_ose = se_ose[model],
> se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
> 1:length(dim))
> summaryTable
> \end{Sinput}
> \begin{Soutput}
> # A tibble: 10 × 7
> model dim score delScore se_ose se_mod index
>
> 1 zero 2 908. 5.84 40.1 4.14 1
> 2 d 3 904. 1.71 40.6 2.52 2
> 3 q 3 907. 4.92 40.2 3.80 3
> 4 qd 4 902. 0 40.7 0 4
> 5 qdi 5 903. 0.632 40.5 1.60 5
> 6 x 6 908. 5.58 40.2 5.53 6
> 7 xq 7 907. 4.81 40.3 5.36 7
> 8 xd 7 905. 2.96 40.5 5.04 8
> 9 xqd 8 903. 0.908 40.5 4.52 9
> 10 xqdi 9 904. 1.89 40.4 4.70 10
> \end{Soutput}
> \end{Schunk}
>
>
> The problem is the output from tibble
> # A tibble: 10 × 7
>
>
> the \times character is Unicode U+00D7 or hex \xd7 and pdflatex lualatex
> etc fail where this occurs
> Is there a way of adding "sanitizing" code in the output before
> compiling
> Or do I have to change it manually before compiling
>
>
> I do not want to switch to knitr.
>
>
> Regards
>
>
> Duncan Mackay
>
You could try to automatically clean the code, by using
?iconv, say. But the results by not be satisfactory,
depending on what characters were used.
Sweave itself does not compile the LaTeX code. If you
run (in R)
Sweave(, encoding = "utf8")
then it will produce the TeX file, which you can then
compile via LuaLaTeX or XeLaTeX [see
e.g. https://www.ctan.org/pkg/lualatex-doc].
For instance, on the command line, just say
lualatex
or another programme (such as latexmk) that your TeX
distribution provides.
If this is a vignette, you can specify a Makefile, see
https://cran.r-project.org/doc/manuals/R-exts.html#Writing-package-vignettes
>
>
> [[alternative HTML version deleted]]
>
> __
> R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
--
Enrico Schumann
Lucerne, Switzerland
http://enricoschumann.net
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] Unicode chars
Are you aware that pdfLatex does not support Unicode? You need to use xeLatex.
But I don't use Sweave, so I don't know how you go about making that choice.
On August 24, 2022 8:03:02 PM PDT, dulcalma dulcalma
wrote:
>
>Dear All
>
>
>I was trying the supplementary file GS_main.R from
>https://esajournals.onlinelibrary.wiley.com/doi/abs/10.1002/ecy.3475
>
>I have tried to prevent latex compilation from failing using Sweave
>after trying all the online fixes I could find including using Rterm
>I could fix it if it was in the input but not in the output
>I am using R version 4.2 on windows 11 with 64 GB memory
>
>
>Sweave code
>
>\begin{small}
><>=
>library(emdbook) # version 1.3.12
>library(bbmle) # version 1.0.23.1
>library(pbmcapply) # version 1.5.0
>library(tidyverse) # version 1.3.0
>library(ggpubr) # version 0.4.0
>@ %%
>
>
><>=
>summaryTable <-
>tibble(model = m.names,
> dim = m.dims[model],
> score = m.loo[model],
> delScore = score - min(score),
> se_ose = se_ose[model],
> se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
>1:length(dim))
>summaryTable
>@ %%
>
>
>Output
>\begin{Schunk}
>\begin{Sinput}
> summaryTable <-
> tibble(model = m.names,
> dim = m.dims[model],
> score = m.loo[model],
> delScore = score - min(score),
> se_ose = se_ose[model],
> se_mod = se_mod[model]) %>% arrange(dim) %>% mutate(index =
>1:length(dim))
> summaryTable
>\end{Sinput}
>\begin{Soutput}
># A tibble: 10 × 7
> model dim score delScore se_ose se_mod index
>
> 1 zero 2 908. 5.84 40.1 4.14 1
> 2 d 3 904. 1.71 40.6 2.52 2
> 3 q 3 907. 4.92 40.2 3.80 3
> 4 qd 4 902. 0 40.7 0 4
> 5 qdi 5 903. 0.632 40.5 1.60 5
> 6 x 6 908. 5.58 40.2 5.53 6
> 7 xq 7 907. 4.81 40.3 5.36 7
> 8 xd 7 905. 2.96 40.5 5.04 8
> 9 xqd 8 903. 0.908 40.5 4.52 9
>10 xqdi 9 904. 1.89 40.4 4.70 10
>\end{Soutput}
>\end{Schunk}
>
>
>The problem is the output from tibble
># A tibble: 10 × 7
>
>
>the \times character is Unicode U+00D7 or hex \xd7 and pdflatex lualatex
>etc fail where this occurs
>Is there a way of adding "sanitizing" code in the output before
>compiling
>Or do I have to change it manually before compiling
>
>
>I do not want to switch to knitr.
>
>
>Regards
>
>
>Duncan Mackay
>
>
>
> [[alternative HTML version deleted]]
>
>__
>R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.
--
Sent from my phone. Please excuse my brevity.
__
R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
