Re: [R] cluster + tt terms in coxph

2014-11-06 Thread Henric Winell

On 2014-11-05 14:50, Therneau, Terry M., Ph.D. wrote:


This is fixed in version 2.37-8 of the survival package, which has been
in my send to CRAN real-soon-now queue for 6 months.  Your note is a
prod to get it done.  I've been updating and adding vignettes.


Is your fixed code publicly available somewhere?  (The 'survival' 
repository at R-forge doesn't seem to have been updated since January.)


Henric Winell




Terry Therneau


On 11/05/2014 05:00 AM, r-help-requ...@r-project.org wrote:

I am receiving the following error when trying to include both tt
(time transforms) and frailty terms in coxph


coxph(Surv(time, status) ~ ph.ecog + tt(age)+cluster(sex), data=lung,

+  tt=function(x,t,...) pspline(x + t/365.25))
Error in residuals.coxph(fit2, type = dfbeta, collapse = cluster,
weighted = TRUE) :
   Wrong length for 'collapse'

I tried both 64 bit (R.3.1.0) and 32 bit (R.3.1.2) in Windows 7 64bit
and get the same errors

Inclusion of tt and cluster terms worked fine in R2.9.2-2.15.1 under
Windows Vista 32 bit and Ubuntu 64 bit

Any ideas?


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Re: [R] cluster + tt terms in coxph

2014-11-05 Thread Therneau, Terry M., Ph.D.
This is fixed in version 2.37-8 of the survival package, which has been in my send to 
CRAN real-soon-now queue for 6 months.  Your note is a prod to get it done.  I've been 
updating and adding vignettes.


Terry Therneau


On 11/05/2014 05:00 AM, r-help-requ...@r-project.org wrote:

I am receiving the following error when trying to include both tt (time 
transforms) and frailty terms in coxph


coxph(Surv(time, status) ~ ph.ecog + tt(age)+cluster(sex), data=lung,

+  tt=function(x,t,...) pspline(x + t/365.25))
Error in residuals.coxph(fit2, type = dfbeta, collapse = cluster, weighted = 
TRUE) :
   Wrong length for 'collapse'

I tried both 64 bit (R.3.1.0) and 32 bit (R.3.1.2) in Windows 7 64bit and get 
the same errors

Inclusion of tt and cluster terms worked fine in R2.9.2-2.15.1 under Windows 
Vista 32 bit and Ubuntu 64 bit

Any ideas?


__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.