Re: [R] functions pandit and treebase in the package apTreeshape
El 06/05/11 01:33, Andrew Robinson escribió: Hi Arnau, please send the output of sessionInfo() and the exact commands and response that you used to install and load apTreeshape. Here It is: sessionInfo() R version 2.12.1 (2010-12-16) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C [3] LC_TIME=es_ES.UTF-8LC_COLLATE=es_ES.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=es_ES.UTF-8 [7] LC_PAPER=es_ES.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] quantreg_4.67 SparseM_0.89 ape_2.5-3 apTreeshape_1.4-3 loaded via a namespace (and not attached): [1] gee_4.13-14 grid_2.12.1 lattice_0.19-17 nlme_3.1-97 Arnau. Cheers Andrew On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote: Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] functions pandit and treebase in the package apTreeshape
El 07/05/11 09:49, Arnau Mir escribió: El 06/05/11 01:33, Andrew Robinson escribió: Hi Arnau, please send the output of sessionInfo() and the exact commands and response that you used to install and load apTreeshape. Sorry, I forgot the commands. Here they are: library(apTreeshape) Loading required package: ape Loading required package: quantreg Loading required package: SparseM Package SparseM (0.89) loaded. To cite, see citation(SparseM) Attaching package: 'SparseM' The following object(s) are masked from 'package:base': backsolve Package quantreg (4.67) loaded. To cite, see citation(quantreg) pandit(2) Error: no se pudo encontrar la función pandit (the function pandit cannot be found) treebase(2) Error: no se pudo encontrar la función treebase (the function treebase cannot be found) sessionInfo() Arnau. Here It is: sessionInfo() R version 2.12.1 (2010-12-16) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C [3] LC_TIME=es_ES.UTF-8LC_COLLATE=es_ES.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=es_ES.UTF-8 [7] LC_PAPER=es_ES.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] quantreg_4.67 SparseM_0.89 ape_2.5-3 apTreeshape_1.4-3 loaded via a namespace (and not attached): [1] gee_4.13-14 grid_2.12.1 lattice_0.19-17 nlme_3.1-97 Arnau. Cheers Andrew On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote: Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] functions pandit and treebase in the package apTreeshape
Thanks! As noted by an earlier poster, these functions seem to have been removed from the package. It might be worth contacting the maintainer to ask if any equivalents are available ... Cheers Andrew On Sat, May 07, 2011 at 09:56:49AM +0200, Arnau Mir wrote: El 07/05/11 09:49, Arnau Mir escribió: El 06/05/11 01:33, Andrew Robinson escribió: Hi Arnau, please send the output of sessionInfo() and the exact commands and response that you used to install and load apTreeshape. Sorry, I forgot the commands. Here they are: library(apTreeshape) Loading required package: ape Loading required package: quantreg Loading required package: SparseM Package SparseM (0.89) loaded. To cite, see citation(SparseM) Attaching package: 'SparseM' The following object(s) are masked from 'package:base': backsolve Package quantreg (4.67) loaded. To cite, see citation(quantreg) pandit(2) Error: no se pudo encontrar la función pandit (the function pandit cannot be found) treebase(2) Error: no se pudo encontrar la función treebase (the function treebase cannot be found) sessionInfo() Arnau. Here It is: sessionInfo() R version 2.12.1 (2010-12-16) Platform: x86_64-pc-linux-gnu (64-bit) locale: [1] LC_CTYPE=es_ES.UTF-8 LC_NUMERIC=C [3] LC_TIME=es_ES.UTF-8LC_COLLATE=es_ES.UTF-8 [5] LC_MONETARY=C LC_MESSAGES=es_ES.UTF-8 [7] LC_PAPER=es_ES.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=es_ES.UTF-8 LC_IDENTIFICATION=C attached base packages: [1] stats graphics grDevices utils datasets methods base other attached packages: [1] quantreg_4.67 SparseM_0.89 ape_2.5-3 apTreeshape_1.4-3 loaded via a namespace (and not attached): [1] gee_4.13-14 grid_2.12.1 lattice_0.19-17 nlme_3.1-97 Arnau. Cheers Andrew On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote: Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau -- Andrew Robinson Program Manager, ACERA Department of Mathematics and StatisticsTel: +61-3-8344-6410 University of Melbourne, VIC 3010 Australia (prefer email) http://www.ms.unimelb.edu.au/~andrewpr Fax: +61-3-8344-4599 http://www.acera.unimelb.edu.au/ Forest Analytics with R (Springer, 2011) http://www.ms.unimelb.edu.au/FAwR/ Introduction to Scientific Programming and Simulation using R (CRC, 2009): http://www.ms.unimelb.edu.au/spuRs/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] functions pandit and treebase in the package apTreeshape
I think those functions are now defunct (were only available in previous versions). S On Thursday, May 5, 2011 at 6:33 PM, Andrew Robinson wrote: Hi Arnau, please send the output of sessionInfo() and the exact commands and response that you used to install and load apTreeshape. Cheers Andrew On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote: Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Andrew Robinson Program Manager, ACERA Department of Mathematics and Statistics Tel: +61-3-8344-6410 University of Melbourne, VIC 3010 Australia (prefer email) http://www.ms.unimelb.edu.au/~andrewpr Fax: +61-3-8344-4599 http://www.acera.unimelb.edu.au/ Forest Analytics with R (Springer, 2011) http://www.ms.unimelb.edu.au/FAwR/ Introduction to Scientific Programming and Simulation using R (CRC, 2009): http://www.ms.unimelb.edu.au/spuRs/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] functions pandit and treebase in the package apTreeshape
Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] functions pandit and treebase in the package apTreeshape
Hi Arnau, please send the output of sessionInfo() and the exact commands and response that you used to install and load apTreeshape. Cheers Andrew On Thu, May 05, 2011 at 04:42:58PM +0200, Arnau Mir wrote: Hello. I'm trying to use the functions pandit and treebase. They are in the package apTreeshape. Once I've loaded the package, R responses: - no function pandit/treebase. Somebody knows why or what is the reason? Thanks, Arnau. Arnau Mir Torres Edifici A. Turmeda Campus UIB Ctra. Valldemossa, km. 7,5 07122 Palma de Mca. tel: (+34) 971172987 fax: (+34) 971173003 email: arnau@uib.es URL: http://dmi.uib.es/~arnau [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Andrew Robinson Program Manager, ACERA Department of Mathematics and StatisticsTel: +61-3-8344-6410 University of Melbourne, VIC 3010 Australia (prefer email) http://www.ms.unimelb.edu.au/~andrewpr Fax: +61-3-8344-4599 http://www.acera.unimelb.edu.au/ Forest Analytics with R (Springer, 2011) http://www.ms.unimelb.edu.au/FAwR/ Introduction to Scientific Programming and Simulation using R (CRC, 2009): http://www.ms.unimelb.edu.au/spuRs/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
