[R] ggplot2: how to add new names to legend

2014-01-15 Thread Anna Zakrisson Braeunlich
Dear all,

I have problems adding new names to the legend (not the legend title).
I have tried all sorts of versions involving scale_fill_discrete and themes. 
Weirdly, my method works fine when changing legend when making a barplot 
instead.
I have searched and tried and am soon throwing the computer out of the window. 
Please, help. I have read the help pages, but I don't understand why this won't 
work.
The plot produced below is extremely ugly. Ignore this. I just wanted to add 
the full script for my own data. With my own data the plot looks fine.

# some dummy data:
mydata- data.frame(week = factor(rep(c(19, 21, 23, 25, 27, 29, 
31, 33,
35, 37, 39), each = 45*3)), #week
station = factor(rep(c(BY31, B1, H2, H3, H4,
   H5, H6, H7, H8), each = 
15)), #station
year = factor(rep(c(2007, 2008, 2009), each = 45)), 
#station
organism = factor(rep(c(zpl, ses, cy), each = 5)), 
#organism
var1 = rnorm(1485, mean = rep(c(0, 3, 15), each = 40),
 sd = rep(c(1, 3, 6), each = 20)))

library(ggplot2)
p - ggplot(mydata,aes(week,var1))+
  facet_grid(year~station, scales = free)+
  scale_shape_manual(values = 1:3) +
  geom_point(mapping=aes(shape=organism))+
  theme_bw() +
  theme(strip.background = element_blank()) +
  xlab(Week)+
  ylab(expression(paste(Biomass (, mu, g , L^-1, +
  geom_line(aes(group=organism, linetype=organism))+
  theme(strip.text.x = element_text(size = 10, colour=black, family=serif, 
angle=00)) +
  theme(strip.text.y = element_text(size = 10, colour=black, family=serif, 
angle=90)) +
  theme(axis.text.x = element_text(size = 10, colour=black, family=serif, 
angle=00)) +
  theme(axis.text.y = element_text(size = 10, colour=black, family=serif, 
angle=00)) +
  theme(axis.title.x = element_text(size=10, colour=black, family=serif, 
angle=00))+
  theme(axis.title.y = element_text(size=10, colour=black, family=serif, 
angle=90))
p

p1 - p+theme(legend.title=element_blank())
p1
p2 - p1+ theme(legend.key = element_blank())
p3 - p2 + theme(legend.position=bottom)
p3 + scale_fill_discrete( #here is 
the issue! It should be discrete and fill?!
  breaks=c(Anab_ug_L, Aph_ug_L, Nod_ug_L),
  labels=c(Anabaena spp., Aphanizomenon sp.,
   N. spumigena))

with kind regards

Anna Zakrisson Braeunlich
PhD student

Department of Ecology, Environment and Plant Sciences
Stockholm University
Svante Arrheniusv. 21A
SE-106 91 Stockholm
Sweden/Sverige

Lives in Berlin.
For paper mail:
Katzbachstr. 21
D-10965, Berlin - Kreuzberg
Germany/Deutschland

E-mail: anna.zakris...@su.se
Tel work: +49-(0)3091541281
Mobile: +49-(0)15777374888
LinkedIn: http://se.linkedin.com/pub/anna-zakrisson-braeunlich/33/5a2/51b

º`•. . • `•. .• `•. . º`•. . • `•. .• `•. .º`•. . • `•. .• 
`•. .º

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Re: [R] ggplot2: how to add new names to legend

2014-01-15 Thread Ista Zahn
Hi Anna,

You haven't mapped fill to anything. Scales only control how a mapping
is translated into a visual property, you have to set the actual
mapping as well. What do you want the fill color to indicate?

Best,
Ista

On Wed, Jan 15, 2014 at 3:42 AM, Anna Zakrisson Braeunlich
anna.zakris...@su.se wrote:
 Dear all,

 I have problems adding new names to the legend (not the legend title).
 I have tried all sorts of versions involving scale_fill_discrete and themes. 
 Weirdly, my method works fine when changing legend when making a barplot 
 instead.
 I have searched and tried and am soon throwing the computer out of the 
 window. Please, help. I have read the help pages, but I don't understand why 
 this won't work.
 The plot produced below is extremely ugly. Ignore this. I just wanted to add 
 the full script for my own data. With my own data the plot looks fine.

 # some dummy data:
 mydata- data.frame(week = factor(rep(c(19, 21, 23, 25, 27, 29, 
 31, 33,
 35, 37, 39), each = 45*3)), 
 #week
 station = factor(rep(c(BY31, B1, H2, H3, H4,
H5, H6, H7, H8), each = 
 15)), #station
 year = factor(rep(c(2007, 2008, 2009), each = 45)), 
 #station
 organism = factor(rep(c(zpl, ses, cy), each = 5)), 
 #organism
 var1 = rnorm(1485, mean = rep(c(0, 3, 15), each = 40),
  sd = rep(c(1, 3, 6), each = 20)))

 library(ggplot2)
 p - ggplot(mydata,aes(week,var1))+
   facet_grid(year~station, scales = free)+
   scale_shape_manual(values = 1:3) +
   geom_point(mapping=aes(shape=organism))+
   theme_bw() +
   theme(strip.background = element_blank()) +
   xlab(Week)+
   ylab(expression(paste(Biomass (, mu, g , L^-1, +
   geom_line(aes(group=organism, linetype=organism))+
   theme(strip.text.x = element_text(size = 10, colour=black, 
 family=serif, angle=00)) +
   theme(strip.text.y = element_text(size = 10, colour=black, 
 family=serif, angle=90)) +
   theme(axis.text.x = element_text(size = 10, colour=black, family=serif, 
 angle=00)) +
   theme(axis.text.y = element_text(size = 10, colour=black, family=serif, 
 angle=00)) +
   theme(axis.title.x = element_text(size=10, colour=black, family=serif, 
 angle=00))+
   theme(axis.title.y = element_text(size=10, colour=black, family=serif, 
 angle=90))
 p

 p1 - p+theme(legend.title=element_blank())
 p1
 p2 - p1+ theme(legend.key = element_blank())
 p3 - p2 + theme(legend.position=bottom)
 p3 + scale_fill_discrete( #here 
 is the issue! It should be discrete and fill?!
   breaks=c(Anab_ug_L, Aph_ug_L, Nod_ug_L),
   labels=c(Anabaena spp., Aphanizomenon sp.,
N. spumigena))

 with kind regards

 Anna Zakrisson Braeunlich
 PhD student

 Department of Ecology, Environment and Plant Sciences
 Stockholm University
 Svante Arrheniusv. 21A
 SE-106 91 Stockholm
 Sweden/Sverige

 Lives in Berlin.
 For paper mail:
 Katzbachstr. 21
 D-10965, Berlin - Kreuzberg
 Germany/Deutschland

 E-mail: anna.zakris...@su.se
 Tel work: +49-(0)3091541281
 Mobile: +49-(0)15777374888
 LinkedIn: http://se.linkedin.com/pub/anna-zakrisson-braeunlich/33/5a2/51b

º`•. . • `•. .• `•. . º`•. . • `•. .• `•. .º`•. . • `•. 
.• `•. .º

 [[alternative HTML version deleted]]


 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.


__
R-help@r-project.org mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.