Re: [R] lattice strip.custom in plot for multiple groups

2015-12-18 Thread David Winsemius

> On Dec 18, 2015, at 12:22 PM, Luigi Marongiu  wrote:
> 
> Dear all,
> I am plotting the count of some data subdivided in different groups.
> the variables i am using are:
> A = tests performed
> B = positive/negative results (but in this case the results are all
> positive, so all 1)
> C = multiple (1) or single (0) test applied
> D = count of instances
> E = cases (1) or controls (0)
> 
> the plot looks the way I need and it is created with lattice's
> barchart. However the strip should indicate "cases"/"controls" and
> instead only shows "E"/"E" so I think I messed somewhere.
> Would you know what did I missed?
> Thank you
> L
> 
> The example:
 
> A <- c('a','b','c','d','a','b','c','d',
> 'b','c','d','b','c','d')
> B <- c(1,1,1,1,1,1,1,1,1,1,1,
>  1,1,1)
> C <- c(0,0,0,0,1,1,1,1,0,0,0,
>  1,1,1)
> D <- c(4,120,7,23,4,24,3,12,7,1,
> 1,5,0,0)
> E <- c(0,0,0,0,0,0,0,0,1,1,1,
>  1,1,1)
> DF <- data.frame(A, B, C, D, E, stringsAsFactors = FALSE)
> library(lattice)
> barchart(
>A ~ D|E,
>DF,
>groups = C,
>stack = TRUE,
>main = "Comparison of test results",
>xlab = "Count",
>col = c("yellow", "orange"),
>par.settings = list(
>strip.background = list(col="light grey"),
>superpose.polygon=list(col= c("yellow", "orange"))
>),
>scales = list(
>alternating = FALSE
>),
>key = list(
>space="top",
>columns=2,
>text=list(c("Single infections", "Multiple infections"), col="black"),
>rectangles=list(col=c("yellow", "orange"))
>),
>strip = strip.custom(factor.levels = c("Cases","Controls"),

Also need to set the logical flag strip.levels to TRUE.

strip = strip.custom(factor.levels = c("Cases","Controls"), 
  strip.levels=TRUE,
par.strip.text = list(cex = 1)

If you do not want the variable name "E" displayed then set the correct flag to 
FALSE. See: 

?strip.custom

-- 
David


> par.strip.text = list(cex = 1)
>)
> )
> 
> __
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> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.

David Winsemius
Alameda, CA, USA

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[R] lattice strip.custom in plot for multiple groups

2015-12-18 Thread Luigi Marongiu
Dear all,
I am plotting the count of some data subdivided in different groups.
the variables i am using are:
A = tests performed
B = positive/negative results (but in this case the results are all
positive, so all 1)
C = multiple (1) or single (0) test applied
D = count of instances
E = cases (1) or controls (0)

the plot looks the way I need and it is created with lattice's
barchart. However the strip should indicate "cases"/"controls" and
instead only shows "E"/"E" so I think I messed somewhere.
Would you know what did I missed?
Thank you
L

The example:
>>>
A <- c('a','b','c','d','a','b','c','d',
'b','c','d','b','c','d')
B <- c(1,1,1,1,1,1,1,1,1,1,1,
  1,1,1)
C <- c(0,0,0,0,1,1,1,1,0,0,0,
  1,1,1)
D <- c(4,120,7,23,4,24,3,12,7,1,
 1,5,0,0)
E <- c(0,0,0,0,0,0,0,0,1,1,1,
  1,1,1)
DF <- data.frame(A, B, C, D, E, stringsAsFactors = FALSE)
library(lattice)
barchart(
A ~ D|E,
DF,
groups = C,
stack = TRUE,
main = "Comparison of test results",
xlab = "Count",
col = c("yellow", "orange"),
par.settings = list(
strip.background = list(col="light grey"),
superpose.polygon=list(col= c("yellow", "orange"))
),
scales = list(
alternating = FALSE
),
key = list(
space="top",
columns=2,
text=list(c("Single infections", "Multiple infections"), col="black"),
rectangles=list(col=c("yellow", "orange"))
),
strip = strip.custom(factor.levels = c("Cases","Controls"),
 par.strip.text = list(cex = 1)
)
)

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R-help@r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.