Re: [R] Mixed ANCOVA with between-Ss covariate?

2009-02-12 Thread Mike Lawrence
I'm surprised there were no takers on this query; I thought it would
be an easy answer, particularly where I provided example data set and
code. Did my request run afoul of the list etiquette?

On Tue, Feb 10, 2009 at 5:12 PM, Mike Lawrence m...@thatmike.com wrote:
 Hi all,

 I have data from an experiment with 3 independent variables, 2 are
 within and 1 is between. In addition to the dependent variable, I have
 a covariate that is a single measure per subject. Below I provide an
 example generated data set and my approach to implementing the ANCOVA.
 However the output confuses me; why does the covariate only appear in
 the first strata? Presumably it should appear in every strata in which
 there can be between-Ss effects or interactions with between-Ss
 effects, no?

 #generate data
 set.seed(1)
 a=rbind(
expand.grid(
id=1:20
,iv1 = 1:2
,iv2 = 1:2
)
 )
 a$group = factor(a$id11)
 a$dv = rnorm(length(a[,1]))
 a$covariate = NA
 for(i in unique(a$id)){
a$covariate[a$id==i]= rnorm(1)
 }

 #make sure id, iv1, and iv2 are factorized
 a$id=factor(a$id)
 a$iv1=factor(a$iv1)
 a$iv2=factor(a$iv2)

 #run ANCOVA
 covariate_aov = aov(dv~covariate+group*iv1*iv2+Error(id/(iv1*iv2)),data=a)
 summary(covariate_aov)


 --
 Mike Lawrence
 Graduate Student
 Department of Psychology
 Dalhousie University
 www.thatmike.com

 Looking to arrange a meeting? Check my public calendar:
 http://www.thatmike.com/mikes-public-calendar

 ~ Certainty is folly... I think. ~




-- 
Mike Lawrence
Graduate Student
Department of Psychology
Dalhousie University
www.thatmike.com

Looking to arrange a meeting? Check my public calendar:
http://www.thatmike.com/mikes-public-calendar

~ Certainty is folly... I think. ~

__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.


Re: [R] Mixed ANCOVA with between-Ss covariate?

2009-02-12 Thread Mark Difford

Hi Mike,

 I'm surprised there were no takers on this query; I thought it would 
 be an easy answer, particularly where I provided example data set and 
 code.

The following simplification should help you to answer your own question.

covariate_aov = aov(dv~(covariate+group+iv1+iv2)^2,data=a)

You can find out more about how to specify models in Chap. 11 of the manual
An Introduction to R.

 Did my request run afoul of the list etiquette?

I don't believe so. You can never be sure that someone who knew the answer
saw your first posting.

Regards, Mark.


Mike Lawrence-7 wrote:
 
 Hi all,
 
 I have data from an experiment with 3 independent variables, 2 are
 within and 1 is between. In addition to the dependent variable, I have
 a covariate that is a single measure per subject. Below I provide an
 example generated data set and my approach to implementing the ANCOVA.
 However the output confuses me; why does the covariate only appear in
 the first strata? Presumably it should appear in every strata in which
 there can be between-Ss effects or interactions with between-Ss
 effects, no?
 
 #generate data
 set.seed(1)
 a=rbind(
   expand.grid(
   id=1:20
   ,iv1 = 1:2
   ,iv2 = 1:2
   )
 )
 a$group = factor(a$id11)
 a$dv = rnorm(length(a[,1]))
 a$covariate = NA
 for(i in unique(a$id)){
   a$covariate[a$id==i]= rnorm(1)
 }
 
 #make sure id, iv1, and iv2 are factorized
 a$id=factor(a$id)
 a$iv1=factor(a$iv1)
 a$iv2=factor(a$iv2)
 
 #run ANCOVA
 covariate_aov = aov(dv~covariate+group*iv1*iv2+Error(id/(iv1*iv2)),data=a)
 summary(covariate_aov)
 
 
 -- 
 Mike Lawrence
 Graduate Student
 Department of Psychology
 Dalhousie University
 www.thatmike.com
 
 Looking to arrange a meeting? Check my public calendar:
 http://www.thatmike.com/mikes-public-calendar
 
 ~ Certainty is folly... I think. ~
 
 __
 R-help@r-project.org mailing list
 https://stat.ethz.ch/mailman/listinfo/r-help
 PLEASE do read the posting guide
 http://www.R-project.org/posting-guide.html
 and provide commented, minimal, self-contained, reproducible code.
 
 

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__
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
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