Re: [R] RMySQL install on windows
On Sun, Dec 2, 2012 at 11:35 AM, rahul143 wrote: > I have been trying to install RMySQL on Windows 7 following the > procedure at: > http://biostat.mc.vanderbilt.edu/wiki/Main/RMySQL > > I think I have properly installed RTools and created a proper > Renviron.site file saying: > MYSQL_HOME="C:/Program Files/MySQL/MySQL Server 5.5" > > When I try to install the packages from source, I get warnings that > suggest I'm still not quite "with the program" yet. There are comments > about POSIX paths that I don't quite grasp. Can anyone give me > additional hints? > > There seems to be a libmysql.dll in the /lib subdirectory although the > install seems to be looking in the /bin directory for a file of similar > name. Is this something that has changed with recent versions of MySQL > that should be fixed in the RMySQL package or is it something I can work > around by hand or by properly setting some environmental variable? > There likely has been some change in the location of the dll's in various versions of MySQL. See: http://www.mail-archive.com/r-help@r-project.org/msg185838.html -- Statistics & Software Consulting GKX Group, GKX Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
Sorry for not taking care of this... If anyone would like to take over maintainership of RMySQL I'm sure the R community would greatly appreciate it. I just don't have the time these days. Jeff [[alternative HTML version deleted]] __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
On Thu, Nov 15, 2012 at 7:49 AM, sbarandiaran wrote: > Uwe, I set the variable with single backslashes, but the output remains the > same. The last part reads: > > "gcc -m64 -shared -s -static-libgcc -o RMySQL.dll tmp.def RS-DBI.o > RS-MySQL.o C:\Program Files\MySQL\MySQL Server 5.5/bin/libmysql.dll > -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 > -Ld:/Rcompile/CRANpkg/extralibs64/local/lib > -LC:/PROGRA~1/R/R-215~1.1/BIN/X64 -lR > gcc.exe: error: C:\Program Files\MySQL\MySQL Server 5.5/bin/libmySQL.dll: > No such file or directory > ERROR: compilation failed for package 'RMySQL' > * removing 'C:/Users/Acer/Documents/R/win-library/2.15/RMySQL' " > The error message says it can't find a particular file. You may have an incomplete installation or perhaps in your distribution the file is not in the expected place. First look for it: cd %MYSQL_HOME% dir/s/b libmySQL.dll If its missing then there is a problem with your installation of MySQL. If its in a different location than expected copy it to the expected location. Do that as Administrator: copy ...wherever...\libmySQL.dll %MYSQL_HOME%\bin If it happens again with some other file then copy it too. -- Statistics & Software Consulting GKX Group, GKX Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
Uwe, I set the variable with single backslashes, but the output remains the same. The last part reads: "gcc -m64 -shared -s -static-libgcc -o RMySQL.dll tmp.def RS-DBI.o RS-MySQL.o C:\Program Files\MySQL\MySQL Server 5.5/bin/libmysql.dll -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64 -Ld:/Rcompile/CRANpkg/extralibs64/local/lib -LC:/PROGRA~1/R/R-215~1.1/BIN/X64 -lR gcc.exe: error: C:\Program Files\MySQL\MySQL Server 5.5/bin/libmySQL.dll: No such file or directory ERROR: compilation failed for package 'RMySQL' * removing 'C:/Users/Acer/Documents/R/win-library/2.15/RMySQL' " -- View this message in context: http://r.789695.n4.nabble.com/RMySQL-install-on-windows-tp4645629p4649590.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
On Wed, Nov 14, 2012 at 12:11 PM, sbarandiaran wrote: > Uwe, now I've tried these steps, following RMySQL installation instructions > (http://cran.r-project.org/web/packages/RMySQL/INSTALL): > > 1. Download the RMySQL_0.9.tar.gz file to the folder C:\Program > Files\R\R-2.15.1\bin\x64 > 2. Open a Windows command line, and change directory to that folder > 3. Enter the following commands: > set MYSQL_HOME=C:\\Program Files\\MySQL\\MySQL Server 5.5 > R CMD INSTALL RMySQL_0.9.tar.gz > > The output ends with: > "gcc.exe: error: C:\Program Files\MySQL\MySQL Server 5.5/bin/libmySQL.dll: > No such file or directory > ERROR: compilation failed for package 'RMySQL' > * removing 'C:/Users/Acer/Documents/R/win-library/2.15/RMySQL' " > > The problem seems to be that it points to an incorrect folder to find the > file 'libmySQL.dll' . This file is located at 'C:\Program Files\MySQL\MySQL > Server 5.5/lib' > MYSQL_HOME is incorrect. Windows uses single backslashes -- not double. (R uses double backslash within "..." to produce a single backsloash but that step was done in Windows console and not in R.) -- Statistics & Software Consulting GKX Group, GKX Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
Uwe, now I've tried these steps, following RMySQL installation instructions (http://cran.r-project.org/web/packages/RMySQL/INSTALL): 1. Download the RMySQL_0.9.tar.gz file to the folder C:\Program Files\R\R-2.15.1\bin\x64 2. Open a Windows command line, and change directory to that folder 3. Enter the following commands: set MYSQL_HOME=C:\\Program Files\\MySQL\\MySQL Server 5.5 R CMD INSTALL RMySQL_0.9.tar.gz The output ends with: "gcc.exe: error: C:\Program Files\MySQL\MySQL Server 5.5/bin/libmySQL.dll: No such file or directory ERROR: compilation failed for package 'RMySQL' * removing 'C:/Users/Acer/Documents/R/win-library/2.15/RMySQL' " The problem seems to be that it points to an incorrect folder to find the file 'libmySQL.dll' . This file is located at 'C:\Program Files\MySQL\MySQL Server 5.5/lib' -- View this message in context: http://r.789695.n4.nabble.com/RMySQL-install-on-windows-tp4645629p4649510.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
On 07.11.2012 21:50, sbarandiaran wrote: Hi, I've followed these steps: I set the MYSQL_HOME environmental variable like this: "c:\PROGRA~1\MySQL\MYSQLS~1.5", then I opened a command prompt, got to the folder that contains the "RMySQL_0.9-3.tar.gz" file, and run the command: "c:\Program Files\R\R-2.15.1\bin\x64\R" CMD INSTALL RMySQL_0.9-3.tar.gz However, I keep getting those "cygwin warnings". 'those "cygwin warnings"' tell you how to turn them off. When I try to load the package: "library(RMySQL)" R tells that "there is no package called 'RMySQL') Then the installation step failed and you have to report the output your got if you want to get any help. Uwe Ligges My R version is 2.15.1 (x64), on Windows 7 (64-bit). I have installed MySQL Server 5.5 (64-bit), and MySQL Connector C 6.0.2 (64-bit). How could you solve those warnings you've mentioned? -- View this message in context: http://r.789695.n4.nabble.com/RMySQL-install-on-windows-tp4645629p4648769.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
Hi, I've followed these steps: I set the MYSQL_HOME environmental variable like this: "c:\PROGRA~1\MySQL\MYSQLS~1.5", then I opened a command prompt, got to the folder that contains the "RMySQL_0.9-3.tar.gz" file, and run the command: "c:\Program Files\R\R-2.15.1\bin\x64\R" CMD INSTALL RMySQL_0.9-3.tar.gz However, I keep getting those "cygwin warnings". When I try to load the package: "library(RMySQL)" R tells that "there is no package called 'RMySQL') My R version is 2.15.1 (x64), on Windows 7 (64-bit). I have installed MySQL Server 5.5 (64-bit), and MySQL Connector C 6.0.2 (64-bit). How could you solve those warnings you've mentioned? -- View this message in context: http://r.789695.n4.nabble.com/RMySQL-install-on-windows-tp4645629p4648769.html Sent from the R help mailing list archive at Nabble.com. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
On 10/10/2012 12:58 PM, Greg Snow wrote: I finally was able to compile/load it under windows 7. I had similar problems to what you show below. I set the MYSQL_HOME environmental variable through windows (start button > control panel > System and Security > system > Advanced System Settings > Environmental variables). I had to set it to the version of the path without spaces, in my case it was: c:\PROGRA~1\MySQL\MYSQLS~1.5 Then I opened a command prompt window, changed to the directory where I had downloaded the tar.gz file from cran and entered the command: "c:\Program Files\R\R-2.15.1\bin\x64\R" CMD INSTALL RMySQL_0.9-3.tar.gz and everything worked (it did not work if I used i386 or just the regular bin folder, possibly due to the version of MySQL I downloaded). Then I started a new instance of R and did library(MySQL) and everything loaded and I was able to connect to a local MySQL database. Hope this helps you as well. Thanks, Greg. I got a couple of warnings during the build, but I can at least load the library. Now, I'll to to learn to use it I had downloaded the 64-bit MySQL engine. The seemingly successful install was on R (64-bit). I guess not unexpectedly I get the from R (i386) > library(RMySQL) Error: package ‘RMySQL’ is not installed for 'arch=i386' Appreciate the guidance. Rob __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] RMySQL install on windows
I finally was able to compile/load it under windows 7. I had similar
problems to what you show below.
I set the MYSQL_HOME environmental variable through windows (start
button > control panel > System and Security > system > Advanced
System Settings > Environmental variables). I had to set it to the
version of the path without spaces, in my case it was:
c:\PROGRA~1\MySQL\MYSQLS~1.5
Then I opened a command prompt window, changed to the directory where
I had downloaded the tar.gz file from cran and entered the command:
"c:\Program Files\R\R-2.15.1\bin\x64\R" CMD INSTALL RMySQL_0.9-3.tar.gz
and everything worked (it did not work if I used i386 or just the
regular bin folder, possibly due to the version of MySQL I
downloaded).
Then I started a new instance of R and did library(MySQL) and
everything loaded and I was able to connect to a local MySQL database.
Hope this helps you as well.
On Tue, Oct 9, 2012 at 3:08 PM, Robert Baer wrote:
> I have been trying to install RMySQL on Windows 7 following the procedure
> at:
> http://biostat.mc.vanderbilt.edu/wiki/Main/RMySQL
>
> I think I have properly installed RTools and created a proper Renviron.site
> file saying:
> MYSQL_HOME="C:/Program Files/MySQL/MySQL Server 5.5"
>
> When I try to install the packages from source, I get warnings that suggest
> I'm still not quite "with the program" yet. There are comments about POSIX
> paths that I don't quite grasp. Can anyone give me additional hints?
>
> There seems to be a libmysql.dll in the /lib subdirectory although the
> install seems to be looking in the /bin directory for a file of similar
> name. Is this something that has changed with recent versions of MySQL that
> should be fixed in the RMySQL package or is it something I can work around
> by hand or by properly setting some environmental variable?
>
> Thanks,
>
> Rob
>
> The errors ...
>
>> install.packages('RMySQL',type='source')
> trying URL 'http://cran.wustl.edu/src/contrib/RMySQL_0.9-3.tar.gz'
> Content type 'application/x-gzip' length 165363 bytes (161 Kb)
> opened URL
> downloaded 161 Kb
>
> * installing *source* package 'RMySQL' ...
> ** package 'RMySQL' successfully unpacked and MD5 sums checked
> checking for $MYSQL_HOME... C:/Program Files/MySQL/MySQL Server 5.5
> cygwin warning:
> MS-DOS style path detected: C:/Program
> Preferred POSIX equivalent is: /cygdrive/c/Program
> CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
> Consult the user's guide for more details about POSIX paths:
> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> test: Files/MySQL/MySQL: unknown operand
> ** libs
> Warning: this package has a non-empty 'configure.win' file,
> so building only the main architecture
>
> cygwin warning:
> MS-DOS style path detected: C:/PROGRA~1/R/R-215~1.1/etc/x64/Makeconf
> Preferred POSIX equivalent is:
> /cygdrive/c/PROGRA~1/R/R-215~1.1/etc/x64/Makeconf
> CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
> Consult the user's guide for more details about POSIX paths:
> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> gcc -m64 -I"C:/PROGRA~1/R/R-215~1.1/include" -DNDEBUG -I"C:/Program
> Files/MySQL/MySQL Server 5.5"/include
> -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99
> -mtune=core2 -c RS-DBI.c -o RS-DBI.o
> RS-DBI.c: In function 'RS_na_set':
> RS-DBI.c:1219:11: warning: variable 'c' set but not used
> [-Wunused-but-set-variable]
> gcc -m64 -I"C:/PROGRA~1/R/R-215~1.1/include" -DNDEBUG -I"C:/Program
> Files/MySQL/MySQL Server 5.5"/include
> -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99
> -mtune=core2 -c RS-MySQL.c -o RS-MySQL.o
> RS-MySQL.c: In function 'RS_MySQL_fetch':
> RS-MySQL.c:657:13: warning: variable 'fld_nullOk' set but not used
> [-Wunused-but-set-variable]
> RS-MySQL.c: In function 'RS_DBI_invokeBeginGroup':
> RS-MySQL.c:1137:30: warning: variable 'val' set but not used
> [-Wunused-but-set-variable]
> RS-MySQL.c: In function 'RS_DBI_invokeNewRecord':
> RS-MySQL.c:1158:20: warning: variable 'val' set but not used
> [-Wunused-but-set-variable]
> RS-MySQL.c: In function 'RS_MySQL_dbApply':
> RS-MySQL.c:1219:38: warning: variable 'fld_nullOk' set but not used
> [-Wunused-but-set-variable]
> gcc -m64 -shared -s -static-libgcc -o RMySQL.dll tmp.def RS-DBI.o RS-MySQL.o
> C:/Program Files/MySQL/MySQL Server 5.5/bin/libmySQL.dll
> -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64
> -Ld:/RCompile/CRANpkg/extralibs64/local/lib
> -LC:/PROGRA~1/R/R-215~1.1/bin/x64 -lR
> gcc.exe: error: C:/Program Files/MySQL/MySQL Server 5.5/bin/libmySQL.dll: No
> such file or directory
> ERROR: compilation failed for package 'RMySQL'
> * removing 'C:/Program Files/R/R-2.15.1/library/RMySQL'
>
> The downloaded source packages are in
> ‘C:\Users\rbaer\AppData\Local\Temp\Rtmps9adPQ\downloaded_packages’
> Warning messages:
> 1: running command 'C:/PROGRA~1/R/R-215~1.1/bin/x64/R CMD INSTALL -l
> "C:/Program Files/R/R-2.15.1/lib
Re: [R] RMySQL install on windows
On Tue, Oct 9, 2012 at 5:08 PM, Robert Baer wrote:
> I have been trying to install RMySQL on Windows 7 following the procedure
> at:
> http://biostat.mc.vanderbilt.edu/wiki/Main/RMySQL
>
> I think I have properly installed RTools and created a proper Renviron.site
> file saying:
> MYSQL_HOME="C:/Program Files/MySQL/MySQL Server 5.5"
>
> When I try to install the packages from source, I get warnings that suggest
> I'm still not quite "with the program" yet. There are comments about POSIX
> paths that I don't quite grasp. Can anyone give me additional hints?
>
> There seems to be a libmysql.dll in the /lib subdirectory although the
> install seems to be looking in the /bin directory for a file of similar
> name. Is this something that has changed with recent versions of MySQL that
> should be fixed in the RMySQL package or is it something I can work around
> by hand or by properly setting some environmental variable?
>
> Thanks,
>
> Rob
>
> The errors ...
>
>> install.packages('RMySQL',type='source')
> trying URL 'http://cran.wustl.edu/src/contrib/RMySQL_0.9-3.tar.gz'
> Content type 'application/x-gzip' length 165363 bytes (161 Kb)
> opened URL
> downloaded 161 Kb
>
> * installing *source* package 'RMySQL' ...
> ** package 'RMySQL' successfully unpacked and MD5 sums checked
> checking for $MYSQL_HOME... C:/Program Files/MySQL/MySQL Server 5.5
> cygwin warning:
> MS-DOS style path detected: C:/Program
> Preferred POSIX equivalent is: /cygdrive/c/Program
> CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
> Consult the user's guide for more details about POSIX paths:
> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> test: Files/MySQL/MySQL: unknown operand
> ** libs
> Warning: this package has a non-empty 'configure.win' file,
> so building only the main architecture
>
> cygwin warning:
> MS-DOS style path detected: C:/PROGRA~1/R/R-215~1.1/etc/x64/Makeconf
> Preferred POSIX equivalent is:
> /cygdrive/c/PROGRA~1/R/R-215~1.1/etc/x64/Makeconf
> CYGWIN environment variable option "nodosfilewarning" turns off this
> warning.
> Consult the user's guide for more details about POSIX paths:
> http://cygwin.com/cygwin-ug-net/using.html#using-pathnames
> gcc -m64 -I"C:/PROGRA~1/R/R-215~1.1/include" -DNDEBUG -I"C:/Program
> Files/MySQL/MySQL Server 5.5"/include
> -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99
> -mtune=core2 -c RS-DBI.c -o RS-DBI.o
> RS-DBI.c: In function 'RS_na_set':
> RS-DBI.c:1219:11: warning: variable 'c' set but not used
> [-Wunused-but-set-variable]
> gcc -m64 -I"C:/PROGRA~1/R/R-215~1.1/include" -DNDEBUG -I"C:/Program
> Files/MySQL/MySQL Server 5.5"/include
> -I"d:/RCompile/CRANpkg/extralibs64/local/include" -O2 -Wall -std=gnu99
> -mtune=core2 -c RS-MySQL.c -o RS-MySQL.o
> RS-MySQL.c: In function 'RS_MySQL_fetch':
> RS-MySQL.c:657:13: warning: variable 'fld_nullOk' set but not used
> [-Wunused-but-set-variable]
> RS-MySQL.c: In function 'RS_DBI_invokeBeginGroup':
> RS-MySQL.c:1137:30: warning: variable 'val' set but not used
> [-Wunused-but-set-variable]
> RS-MySQL.c: In function 'RS_DBI_invokeNewRecord':
> RS-MySQL.c:1158:20: warning: variable 'val' set but not used
> [-Wunused-but-set-variable]
> RS-MySQL.c: In function 'RS_MySQL_dbApply':
> RS-MySQL.c:1219:38: warning: variable 'fld_nullOk' set but not used
> [-Wunused-but-set-variable]
> gcc -m64 -shared -s -static-libgcc -o RMySQL.dll tmp.def RS-DBI.o RS-MySQL.o
> C:/Program Files/MySQL/MySQL Server 5.5/bin/libmySQL.dll
> -Ld:/RCompile/CRANpkg/extralibs64/local/lib/x64
> -Ld:/RCompile/CRANpkg/extralibs64/local/lib
> -LC:/PROGRA~1/R/R-215~1.1/bin/x64 -lR
> gcc.exe: error: C:/Program Files/MySQL/MySQL Server 5.5/bin/libmySQL.dll: No
> such file or directory
> ERROR: compilation failed for package 'RMySQL'
> * removing 'C:/Program Files/R/R-2.15.1/library/RMySQL'
>
> The downloaded source packages are in
> ‘C:\Users\rbaer\AppData\Local\Temp\Rtmps9adPQ\downloaded_packages’
> Warning messages:
> 1: running command 'C:/PROGRA~1/R/R-215~1.1/bin/x64/R CMD INSTALL -l
> "C:/Program Files/R/R-2.15.1/library"
> C:\Users\rbaer\AppData\Local\Temp\Rtmps9adPQ/downloaded_packages/RMySQL_0.9-3.tar.gz'
> had status 1
> 2: In install.packages("RMySQL", type = "source") :
> installation of package ‘RMySQL’ had non-zero exit status
>> R.Version()
> $platform
> [1] "x86_64-pc-mingw32"
>
> $arch
> [1] "x86_64"
>
> $os
> [1] "mingw32"
>
> $system
> [1] "x86_64, mingw32"
>
> $status
> [1] ""
>
> $major
> [1] "2"
>
> $minor
> [1] "15.1"
>
> $year
> [1] "2012"
>
> $month
> [1] "06"
>
> $day
> [1] "22"
>
> $`svn rev`
> [1] "59607"
>
> $language
> [1] "R"
>
> $version.string
> [1] "R version 2.15.1 (2012-06-22)"
>
> $nickname
> [1] "Roasted Marshmallows"
>
> __
> R-help@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contai
