Re: [R] automating a script to read a file
Petr, R- Users The scheme you provided yesterday worked very well. I am now trying to add more information to the graph(s) to make them more informative for my purposes. Essentially, I am trying to use a double Y axis graphic that will include the skew normal curves that I wrote about yesterday and a histogram. The graph is very similar to the one produced by the following: library(latticeExtra) doubleYScale(histogram(x), densityplot(x), use.style = FALSE) However, I'd like to substitute the following syntax: doubleYScale(hist(mydata, breaks=20, prob=T, xlim=c(-100, 2000), plot.spdf(x), use.style=FALSE) This does not work as doubleYScale expects histogram and densityplot, and I'd like to use the plot.spdf routine in its place. Any Suggestions would be greatly appreciated. I'm working with R 2.15.0 (2012-03-12) Platform i386-pc-mingw32/ie86 (32-bit) Thanks Steve Steve Friedman Ph. D. Ecologist / Spatial Statistical Analyst Everglades and Dry Tortugas National Park 950 N Krome Ave (3rd Floor) Homestead, Florida 33034 steve_fried...@nps.gov Office (305) 224 - 4282 Fax (305) 224 - 4147 Petr Savicky savi...@cs.cas.c z To Sent by: r-help@r-project.org r-help-bounces@r- cc project.org Subject Re: [R] automating a script to read 04/23/2012 04:42 a file PM On Mon, Apr 23, 2012 at 04:02:45PM -0400, steve_fried...@nps.gov wrote: Hi, The following script (which I did not develop) is used to calculate and plot a skewed normal curve. The script currently requires the user to input six parameters, rather than reading these directly from a file. I've been spinning wheels here, trying to figure out how to modify the script to automate it. I have four data sets, each in excess of 300 records that I need to process. My initial thoughts were to use the lapply and use a pdf graphic device to capture the plots to do this, but my R programming skills are too limited to determine how to best accomplish this. Hi. If you read the parameters from a file and put them to a matrix, then all the plots may be produced using a loop like the following. #some parameters p - matrix(1:18, nrow=3, ncol=6) for (i in 1:nrow(p)) { plot.spdf(p[i, 1], p[i, 2], p[i, 3], p[i, 4], p[i, 5], p[i, 6]) readline(press Enter to continue) } If you use pdf() for sending the graphics to a file, then remove the readline command. Hope this helps. Petr Savicky. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] automating a script to read a file
On Tue, Apr 24, 2012 at 2:09 PM, steve_fried...@nps.gov wrote: library(latticeExtra) doubleYScale(hist(mydata, breaks=20, prob=T, xlim=c(-100, 2000), plot.spdf(x), use.style=FALSE) This does not work as doubleYScale expects histogram and densityplot, and I'd like to use the plot.spdf routine in its place. Maybe it doesn't work because ?hist is base graphics, not the same as ?histogram in lattice. You did not provide plot.spdf or any data, so this just a place to start type response. Cheers Any Suggestions would be greatly appreciated. I'm working with R 2.15.0 (2012-03-12) Platform i386-pc-mingw32/ie86 (32-bit) Thanks Steve Steve Friedman Ph. D. Ecologist / Spatial Statistical Analyst Everglades and Dry Tortugas National Park 950 N Krome Ave (3rd Floor) Homestead, Florida 33034 steve_fried...@nps.gov Office (305) 224 - 4282 Fax (305) 224 - 4147 Petr Savicky savi...@cs.cas.c z To Sent by: r-help@r-project.org r-help-bounces@r- cc project.org Subject Re: [R] automating a script to read 04/23/2012 04:42 a file PM On Mon, Apr 23, 2012 at 04:02:45PM -0400, steve_fried...@nps.gov wrote: Hi, The following script (which I did not develop) is used to calculate and plot a skewed normal curve. The script currently requires the user to input six parameters, rather than reading these directly from a file. I've been spinning wheels here, trying to figure out how to modify the script to automate it. I have four data sets, each in excess of 300 records that I need to process. My initial thoughts were to use the lapply and use a pdf graphic device to capture the plots to do this, but my R programming skills are too limited to determine how to best accomplish this. Hi. If you read the parameters from a file and put them to a matrix, then all the plots may be produced using a loop like the following. #some parameters p - matrix(1:18, nrow=3, ncol=6) for (i in 1:nrow(p)) { plot.spdf(p[i, 1], p[i, 2], p[i, 3], p[i, 4], p[i, 5], p[i, 6]) readline(press Enter to continue) } If you use pdf() for sending the graphics to a file, then remove the readline command. Hope this helps. Petr Savicky. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] automating a script to read a file
On Tue, Apr 24, 2012 at 6:00 PM, Steve Friedman skfgla...@gmail.com wrote: The original post does contain the function plot.spdf and some sample data. That's great. And who's responsibility is it to make sure we have context for THIS post ? This is a mailing list, not a forum and MY mail client doesn't keep track of YOUR postings. BTW, you are the one seeking our help, so even if you think it was a picky request, a proper response would be to simply post your function+data set. Not send us looking for some original post. I thought I also made it clear that I understood that hist and histogram are not the same. No you didn't. But now IT IS clear you don't realize grid and base graphics don't mix. I am looking for a way to use the alternatives in a function similar to but not identical to doubleYScale. LatticeExtra functions expect any lattice plots, including local (user defined) panel/plot functions, if only you would have posted plot.spdf maybe you would have gotten a solution by now... If plot.spdf is actually a base graphics plotter and you just stumbled upon DoubleYscale somehow, ?par ?axis hist(...,add=T) are all available to you. Best Steve On Apr 24, 2012 7:45 PM, ilai ke...@math.montana.edu wrote: On Tue, Apr 24, 2012 at 2:09 PM, steve_fried...@nps.gov wrote: library(latticeExtra) doubleYScale(hist(mydata, breaks=20, prob=T, xlim=c(-100, 2000), plot.spdf(x), use.style=FALSE) This does not work as doubleYScale expects histogram and densityplot, and I'd like to use the plot.spdf routine in its place. Maybe it doesn't work because ?hist is base graphics, not the same as ?histogram in lattice. You did not provide plot.spdf or any data, so this just a place to start type response. Cheers Any Suggestions would be greatly appreciated. I'm working with R 2.15.0 (2012-03-12) Platform i386-pc-mingw32/ie86 (32-bit) Thanks Steve Steve Friedman Ph. D. Ecologist / Spatial Statistical Analyst Everglades and Dry Tortugas National Park 950 N Krome Ave (3rd Floor) Homestead, Florida 33034 steve_fried...@nps.gov Office (305) 224 - 4282 Fax (305) 224 - 4147 Petr Savicky savi...@cs.cas.c z To Sent by: r-help@r-project.org r-help-bounces@r- cc project.org Subject Re: [R] automating a script to read 04/23/2012 04:42 a file PM On Mon, Apr 23, 2012 at 04:02:45PM -0400, steve_fried...@nps.gov wrote: Hi, The following script (which I did not develop) is used to calculate and plot a skewed normal curve. The script currently requires the user to input six parameters, rather than reading these directly from a file. I've been spinning wheels here, trying to figure out how to modify the script to automate it. I have four data sets, each in excess of 300 records that I need to process. My initial thoughts were to use the lapply and use a pdf graphic device to capture the plots to do this, but my R programming skills are too limited to determine how to best accomplish this. Hi. If you read the parameters from a file and put them to a matrix, then all the plots may be produced using a loop like the following. #some parameters p - matrix(1:18, nrow=3, ncol=6) for (i in 1:nrow(p)) { plot.spdf(p[i, 1], p[i, 2], p[i, 3], p[i, 4], p[i, 5], p[i, 6]) readline(press Enter to continue) } If you use pdf() for sending the graphics to a file, then remove the readline command. Hope this helps. Petr Savicky. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] automating a script to read a file
On Mon, Apr 23, 2012 at 04:02:45PM -0400, steve_fried...@nps.gov wrote: Hi, The following script (which I did not develop) is used to calculate and plot a skewed normal curve. The script currently requires the user to input six parameters, rather than reading these directly from a file. I've been spinning wheels here, trying to figure out how to modify the script to automate it. I have four data sets, each in excess of 300 records that I need to process. My initial thoughts were to use the lapply and use a pdf graphic device to capture the plots to do this, but my R programming skills are too limited to determine how to best accomplish this. Hi. If you read the parameters from a file and put them to a matrix, then all the plots may be produced using a loop like the following. #some parameters p - matrix(1:18, nrow=3, ncol=6) for (i in 1:nrow(p)) { plot.spdf(p[i, 1], p[i, 2], p[i, 3], p[i, 4], p[i, 5], p[i, 6]) readline(press Enter to continue) } If you use pdf() for sending the graphics to a file, then remove the readline command. Hope this helps. Petr Savicky. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] automating a script to read a file
Petr, Thank you very much this works. A little more tweaking and I'll have what I need. Thanks Steve Friedman Ph. D. Ecologist / Spatial Statistical Analyst Everglades and Dry Tortugas National Park 950 N Krome Ave (3rd Floor) Homestead, Florida 33034 steve_fried...@nps.gov Office (305) 224 - 4282 Fax (305) 224 - 4147 Petr Savicky savi...@cs.cas.c z To Sent by: r-help@r-project.org r-help-bounces@r- cc project.org Subject Re: [R] automating a script to read 04/23/2012 04:42 a file PM On Mon, Apr 23, 2012 at 04:02:45PM -0400, steve_fried...@nps.gov wrote: Hi, The following script (which I did not develop) is used to calculate and plot a skewed normal curve. The script currently requires the user to input six parameters, rather than reading these directly from a file. I've been spinning wheels here, trying to figure out how to modify the script to automate it. I have four data sets, each in excess of 300 records that I need to process. My initial thoughts were to use the lapply and use a pdf graphic device to capture the plots to do this, but my R programming skills are too limited to determine how to best accomplish this. Hi. If you read the parameters from a file and put them to a matrix, then all the plots may be produced using a loop like the following. #some parameters p - matrix(1:18, nrow=3, ncol=6) for (i in 1:nrow(p)) { plot.spdf(p[i, 1], p[i, 2], p[i, 3], p[i, 4], p[i, 5], p[i, 6]) readline(press Enter to continue) } If you use pdf() for sending the graphics to a file, then remove the readline command. Hope this helps. Petr Savicky. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.