Re: [R] internal error -3 in R_decompress1

[Prof Brian Ripley]

On 13/08/2013 18:47, Jannis wrote:

Dear r users,


what could cause such an error:

"internal error -3 in R_decompress1"


unfortunately the error kills all my usual error catching mechanisms an
appears on a remote cluster so I can not really tell you which command
etc is causing it.


It is a corrupt package installation, so re-install.




Thanks for any hints on where to dig for the solution (or even the just
cause).

Jannis



R version 3.0.0 (2013-04-03)
Platform: x86_64-unknown-linux-gnu (64-bit)

locale:
  [1] LC_CTYPE=en_US.UTF-8   LC_NUMERIC=C
  [3] LC_TIME=en_US.UTF-8LC_COLLATE=en_US.UTF-8
  [5] LC_MONETARY=en_US.UTF-8LC_MESSAGES=en_US.UTF-8
  [7] LC_PAPER=C LC_NAME=C
  [9] LC_ADDRESS=C   LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] parallel  stats graphics  grDevices datasets  utils methods
[8] base

other attached packages:
  [1] snowfall_1.84-4snow_0.3-12
  [3] DistributionUtils_0.5-1RUnit_0.4.26
  [5] RColorBrewer_1.0-5 plotrix_3.5
  [7] doMC_1.3.0 iterators_1.0.6
  [9] multicore_0.1-7plyr_1.8
[11] raster_2.1-49  sp_1.0-11
[13] abind_1.4-0foreach_1.4.1
[15] RNetCDF_1.6.1-2Rssa_0.9.10
[17] forecast_4.06  svd_0.3.2-1

loaded via a namespace (and not attached):
  [1] codetools_0.2-8  colorspace_1.2-2 compiler_3.0.0 fracdiff_1.4-2
  [5] grid_3.0.0   lattice_0.20-15  nnet_7.3-7 quadprog_1.5-5
  [9] tools_3.0.0  tseries_0.10-32  zoo_1.7-10

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--
Brian D. Ripley,  rip...@stats.ox.ac.uk
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595

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Re: [R] internal error -3 in R_decompress1

[Jeff Newmiller]

try

options (error= recover)

and examine the stack frames.
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Jannis  wrote:

>Dear R community,
>
>i ran into a quite cryptic error message while running some non 
>interactive calculations. The error message reads:
>
>Error in formals(FilterTSeriesSSA) : internal error -3 in R_decompress1
>
>
>This FilterTseriesSSA is a function I wrote. Where could such an error 
>originate from? What is the best place to start digging for the cause
>of 
>the error? Running the same line of code interactively or using the 
>output of dump.frames also does not reproduce the error.
>
>
>Cheers
>jannis
>
>__
>R-help@r-project.org mailing list
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

__
R-help@r-project.org mailing list
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PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.