Thanks David.
My code is ok if I did not wrap it up. The problem poped up after i make it
as a function.
In my step() call, i just make it a little bit more general.
I do not like stepwise method too, but need it as a comparison.
samer
On Mon, Nov 16, 2009 at 3:03 PM, David Winsemius wrote:
>
> On Nov 16, 2009, at 2:31 PM, shuai yuan wrote:
>
> Hi, there,
>>
>> My appologize if someone ask the same question before. I searched the
>> mailing list and found one similar post, but not what i want.
>>
>> The problem for me is, I use the step( glm()) to do naive forward
>> selection for logistic regression. My code is functional
>> in the open environment. But if I wrap it up as a function, then R keeps
>> saying "object 'a' not found". Actually, data frame
>> "a" is inside the function.
>>
>> I did some search online. i guess the reason may be R did not keep the
>> data
>> in glm() output after building the model but not sure.
>> Can anyone please tell me how to work around this problem?
>>
>> Thanks a lot in advance.
>>
>> I am using R 2.9.0. Here is the sample code:
>>
>> #
>> naivelr<-function(x,y){
>> :
>> :
>> :
>>
>> a<-data.frame(x)
>>
>>
>> form<-paste("y~1+",paste(grep("X.*",names(a),value=T),collapse="+"),sep="")
>>
>> if(is.null(force.in)!=T){
>> lowmo<-paste("y~1+",paste(grep("X.*",names(a)[force.in
>> ],value=T),collapse="+"),sep="")
>>
>> } else
>> {lowmo<-"y~1"}
>>
>> lower1<-glm(lowmo,family="binomial",data=data.frame(a,y))
>> upper1<-glm(form,family="binomial",data=data.frame(a,y))
>>
>
> You are sticking data.frame= a inside another data.frame
>
>
>
>>
>>
>> stepout<-step(lower1,scope=list(lower=lower1,upper=upper1),direction="forward",k=0,trace=100)
>>
>
> Thats not the way I remember "step"-ping. I thought you made a fit and then
> "stepped" the formulas (using the same data), rather putting the whole glm
> object into a "lower" and an "upper". I could be wrong about that since I
> try to avoid using stepwise methods.
>
>
> # here is the error:Start:
>> #AIC=689.62
>> #y ~ 1
>> #Error in data.frame(a, y) : object 'a' not found---but "a" is there!
>>
>
> But it's probably not in a form that can be interpreted. Consider adding y
> as a column in "a".
>
> David Winsemius, MD
> Heritage Laboratories
> West Hartford, CT
>
>
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