Re: [R] texi2dvi: option clean also deletes the generated pdf file
Dear Marius, from reading the texi2dvi man-page and R-help on texi2dvi I suggest to set 'clean=F' and use 'texi2dvi = getOption(texi2dvi --mostly-clean)' instead. Tim On Thu, Aug 19, 2010 at 10:36:30AM +0200, Marius Hofert wrote: Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file=myLaTeXFile1.tex) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(myLaTeXFile1.tex,pdf=TRUE,clean=TRUE,quiet=TRUE) ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A signature.asc Description: Digital signature __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] texi2dvi: option clean also deletes the generated pdf file
Dear Tim, you mean require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,quiet=TRUE,texi2dvi=getOption(texi2dvi --mostly-clean)) ? The problem is that this does not work. It produces the same output as my Example 2 without the clean-option. So it leaves all files in the working directory. The reason why I am looking for a clean-up is that I have to compile several hundred LaTeX files in different directories... Cheers, Marius On 2010-08-19, at 12:33 , Tim Gruene wrote: Dear Marius, from reading the texi2dvi man-page and R-help on texi2dvi I suggest to set 'clean=F' and use 'texi2dvi = getOption(texi2dvi --mostly-clean)' instead. Tim On Thu, Aug 19, 2010 at 10:36:30AM +0200, Marius Hofert wrote: Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file=myLaTeXFile1.tex) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(myLaTeXFile1.tex,pdf=TRUE,clean=TRUE,quiet=TRUE) ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] texi2dvi: option clean also deletes the generated pdf file
Dear Marius, yes, that's what I had meant. I am sorry I had not actually tested my suggestion nor your problem (bad practice). Now I have and actually in case 2 you describe I only end up with test/myLaTeXFile2.tex and myLaTeXFile2.pdf. If, however, I run texi2dvi at least once with option 'clean=F', the auxiliary files are generated and left in the path. Also upon a subsequent run with the option 'clean=T', they are not being deleted. Could this also be the case for you, i.e., that you once used the option 'clean=F' (or not set at all) and now are made believe 'clean=T' does not work because they are still there but actually left-overs from the old run? I run R version 2.7.1 (2008-06-23) on Debian stable. Kind regards, Tim On Thu, Aug 19, 2010 at 12:41:57PM +0200, Marius Hofert wrote: Dear Tim, you mean require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,quiet=TRUE,texi2dvi=getOption(texi2dvi --mostly-clean)) ? The problem is that this does not work. It produces the same output as my Example 2 without the clean-option. So it leaves all files in the working directory. The reason why I am looking for a clean-up is that I have to compile several hundred LaTeX files in different directories... Cheers, Marius On 2010-08-19, at 12:33 , Tim Gruene wrote: Dear Marius, from reading the texi2dvi man-page and R-help on texi2dvi I suggest to set 'clean=F' and use 'texi2dvi = getOption(texi2dvi --mostly-clean)' instead. Tim On Thu, Aug 19, 2010 at 10:36:30AM +0200, Marius Hofert wrote: Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file=myLaTeXFile1.tex) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(myLaTeXFile1.tex,pdf=TRUE,clean=TRUE,quiet=TRUE) ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A signature.asc Description: Digital signature __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] texi2dvi: option clean also deletes the generated pdf file
Dear Tim, if I run ... ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) ... on a fresh-and-clean working directory (and also no files in the subdirectory ./test), I only get the file myLaTeXFile2.tex in ./test, so *everything* (including the .pdf) is deleted :-( I work with R version 2.11.1 (2010-05-31) on a MacBook Pro running 10.6.4. Cheers, Marius On 2010-08-19, at 13:38 , Tim Gruene wrote: Dear Marius, yes, that's what I had meant. I am sorry I had not actually tested my suggestion nor your problem (bad practice). Now I have and actually in case 2 you describe I only end up with test/myLaTeXFile2.tex and myLaTeXFile2.pdf. If, however, I run texi2dvi at least once with option 'clean=F', the auxiliary files are generated and left in the path. Also upon a subsequent run with the option 'clean=T', they are not being deleted. Could this also be the case for you, i.e., that you once used the option 'clean=F' (or not set at all) and now are made believe 'clean=T' does not work because they are still there but actually left-overs from the old run? I run R version 2.7.1 (2008-06-23) on Debian stable. Kind regards, Tim On Thu, Aug 19, 2010 at 12:41:57PM +0200, Marius Hofert wrote: Dear Tim, you mean require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,quiet=TRUE,texi2dvi=getOption(texi2dvi --mostly-clean)) ? The problem is that this does not work. It produces the same output as my Example 2 without the clean-option. So it leaves all files in the working directory. The reason why I am looking for a clean-up is that I have to compile several hundred LaTeX files in different directories... Cheers, Marius On 2010-08-19, at 12:33 , Tim Gruene wrote: Dear Marius, from reading the texi2dvi man-page and R-help on texi2dvi I suggest to set 'clean=F' and use 'texi2dvi = getOption(texi2dvi --mostly-clean)' instead. Tim On Thu, Aug 19, 2010 at 10:36:30AM +0200, Marius Hofert wrote: Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file=myLaTeXFile1.tex) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(myLaTeXFile1.tex,pdf=TRUE,clean=TRUE,quiet=TRUE) ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] texi2dvi: option clean also deletes the generated pdf file
On 19/08/2010 7:55 AM, Marius Hofert wrote: Dear Tim, if I run ... ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) ... on a fresh-and-clean working directory (and also no files in the subdirectory ./test), I only get the file myLaTeXFile2.tex in ./test, so *everything* (including the .pdf) is deleted :-( The texi2dvi function has two possible execution paths: in one, it basically constructs a call to the system texi2dvi command and calls that, and in the other it emulates the behaviour of texi2dvi. I haven't checked recently, but I think the second method doesn't do anything with clean=TRUE, so it looks as though this is a problem with the texi2dvi command you have installed on your system. To confirm this, run debug(tools:::.shell_with_capture), and run texi2dvi. When R breaks in that .shell_with_capture, it will show you what it is trying to execute. If it is using your system texi2dvi command, it will call it once with option --help to find out what options are supported, and then a second call will show you the main command line. You can use this to report a bug to Apple or whoever supplied your texi2dvi. Duncan Murdoch I work with R version 2.11.1 (2010-05-31) on a MacBook Pro running 10.6.4. Cheers, Marius On 2010-08-19, at 13:38 , Tim Gruene wrote: Dear Marius, yes, that's what I had meant. I am sorry I had not actually tested my suggestion nor your problem (bad practice). Now I have and actually in case 2 you describe I only end up with test/myLaTeXFile2.tex and myLaTeXFile2.pdf. If, however, I run texi2dvi at least once with option 'clean=F', the auxiliary files are generated and left in the path. Also upon a subsequent run with the option 'clean=T', they are not being deleted. Could this also be the case for you, i.e., that you once used the option 'clean=F' (or not set at all) and now are made believe 'clean=T' does not work because they are still there but actually left-overs from the old run? I run R version 2.7.1 (2008-06-23) on Debian stable. Kind regards, Tim On Thu, Aug 19, 2010 at 12:41:57PM +0200, Marius Hofert wrote: Dear Tim, you mean require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,quiet=TRUE,texi2dvi=getOption(texi2dvi --mostly-clean)) ? The problem is that this does not work. It produces the same output as my Example 2 without the clean-option. So it leaves all files in the working directory. The reason why I am looking for a clean-up is that I have to compile several hundred LaTeX files in different directories... Cheers, Marius On 2010-08-19, at 12:33 , Tim Gruene wrote: Dear Marius, from reading the texi2dvi man-page and R-help on texi2dvi I suggest to set 'clean=F' and use 'texi2dvi = getOption(texi2dvi --mostly-clean)' instead. Tim On Thu, Aug 19, 2010 at 10:36:30AM +0200, Marius Hofert wrote: Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file=myLaTeXFile1.tex) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(myLaTeXFile1.tex,pdf=TRUE,clean=TRUE,quiet=TRUE) ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide
Re: [R] texi2dvi: option clean also deletes the generated pdf file
Dear Marius, I see. I suppose it's a matter of your version of texi2dvi then - when I do the same in a freshly created directory (including the test directory), cutting and pasting your very code into R leaves me only with myLaTeXFile2.pdf and test/myLaTeXFile2.tex This is texi2dvi --version texi2dvi (GNU Texinfo 4.11) 1.104 Tim On Thu, Aug 19, 2010 at 01:55:06PM +0200, Marius Hofert wrote: Dear Tim, if I run ... ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) ... on a fresh-and-clean working directory (and also no files in the subdirectory ./test), I only get the file myLaTeXFile2.tex in ./test, so *everything* (including the .pdf) is deleted :-( I work with R version 2.11.1 (2010-05-31) on a MacBook Pro running 10.6.4. Cheers, Marius On 2010-08-19, at 13:38 , Tim Gruene wrote: Dear Marius, yes, that's what I had meant. I am sorry I had not actually tested my suggestion nor your problem (bad practice). Now I have and actually in case 2 you describe I only end up with test/myLaTeXFile2.tex and myLaTeXFile2.pdf. If, however, I run texi2dvi at least once with option 'clean=F', the auxiliary files are generated and left in the path. Also upon a subsequent run with the option 'clean=T', they are not being deleted. Could this also be the case for you, i.e., that you once used the option 'clean=F' (or not set at all) and now are made believe 'clean=T' does not work because they are still there but actually left-overs from the old run? I run R version 2.7.1 (2008-06-23) on Debian stable. Kind regards, Tim On Thu, Aug 19, 2010 at 12:41:57PM +0200, Marius Hofert wrote: Dear Tim, you mean require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,quiet=TRUE,texi2dvi=getOption(texi2dvi --mostly-clean)) ? The problem is that this does not work. It produces the same output as my Example 2 without the clean-option. So it leaves all files in the working directory. The reason why I am looking for a clean-up is that I have to compile several hundred LaTeX files in different directories... Cheers, Marius On 2010-08-19, at 12:33 , Tim Gruene wrote: Dear Marius, from reading the texi2dvi man-page and R-help on texi2dvi I suggest to set 'clean=F' and use 'texi2dvi = getOption(texi2dvi --mostly-clean)' instead. Tim On Thu, Aug 19, 2010 at 10:36:30AM +0200, Marius Hofert wrote: Dear expeRts, below are two examples of using texi2dvi. The problem becomes clear from the second example: on cleaning, texi2dvi also deletes the generated .pdf file. Is there a solution? Cheers, Marius ## Example 1: texi2dvi cleans fine, without deleting the generated .pdf require(tools) sink(file=myLaTeXFile1.tex) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(myLaTeXFile1.tex,pdf=TRUE,clean=TRUE,quiet=TRUE) ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -- -- Tim Gruene Institut fuer anorganische Chemie Tammannstr. 4 D-37077 Goettingen GPG Key ID = A46BEE1A -- --
Re: [R] texi2dvi: option clean also deletes the generated pdf file
Dear all, many thanks for your help. I totally missed that texi2dvi is also a system command (I don't use that explicitly to compile my .tex docs). So I checked my system-texi2dvi. It's quite interesting, if I use the option --mostly-clean, everthing is removed. However, if I use just --clean, then the generated pdf file is not removed. So the solution is to call (in the shell): texi2dvi --clean --pdf ./test/myLaTeXFile2.tex I can call this from within system() [or even use pdflatex directly from within system()]. I guess I don't need R's texi2dvi anymore. Many thanks Marius Ps: Here is the output of what Duncan suggested: debug(tools:::.shell_with_capture) require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) debugging in: .shell_with_capture(paste(shQuote(texi2dvi), --help)) debug: { outfile - tempfile(xshell) errfile - tempfile(xshell) on.exit(unlink(c(outfile, errfile))) status - if (.Platform$OS.type == windows) shell(sprintf(%s %s 2 %s, command, outfile, errfile), input = input, shell = cmd.exe) else system(sprintf(%s %s 2 %s, command, outfile, errfile), input = input) list(status = status, stdout = readLines(outfile, warn = FALSE), stderr = readLines(errfile, warn = FALSE)) } Browse[2] debug: outfile - tempfile(xshell) Browse[2] debug: errfile - tempfile(xshell) Browse[2] debug: on.exit(unlink(c(outfile, errfile))) Browse[2] debug: status - if (.Platform$OS.type == windows) shell(sprintf(%s %s 2 %s, command, outfile, errfile), input = input, shell = cmd.exe) else system(sprintf(%s %s 2 %s, command, outfile, errfile), input = input) Browse[2] debug: system(sprintf(%s %s 2 %s, command, outfile, errfile), input = input) Browse[2] debug: list(status = status, stdout = readLines(outfile, warn = FALSE), stderr = readLines(errfile, warn = FALSE)) Browse[2] exiting from: .shell_with_capture(paste(shQuote(texi2dvi), --help)) debugging in: .shell_with_capture(paste(shQuote(texi2dvi), opt_pdf, opt_quiet, opt_extra, shQuote(file))) debug: { outfile - tempfile(xshell) errfile - tempfile(xshell) on.exit(unlink(c(outfile, errfile))) status - if (.Platform$OS.type == windows) shell(sprintf(%s %s 2 %s, command, outfile, errfile), input = input, shell = cmd.exe) else system(sprintf(%s %s 2 %s, command, outfile, errfile), input = input) list(status = status, stdout = readLines(outfile, warn = FALSE), stderr = readLines(errfile, warn = FALSE)) } Browse[2] debug: outfile - tempfile(xshell) Browse[2] debug: errfile - tempfile(xshell) Browse[2] debug: on.exit(unlink(c(outfile, errfile))) Browse[2] debug: status - if (.Platform$OS.type == windows) shell(sprintf(%s %s 2 %s, command, outfile, errfile), input = input, shell = cmd.exe) else system(sprintf(%s %s 2 %s, command, outfile, errfile), input = input) Browse[2] debug: system(sprintf(%s %s 2 %s, command, outfile, errfile), input = input) Browse[2] debug: list(status = status, stdout = readLines(outfile, warn = FALSE), stderr = readLines(errfile, warn = FALSE)) Browse[2] exiting from: .shell_with_capture(paste(shQuote(texi2dvi), opt_pdf, opt_quiet, opt_extra, shQuote(file))) On 2010-08-19, at 15:02 , Tim Gruene wrote: Dear Marius, I see. I suppose it's a matter of your version of texi2dvi then - when I do the same in a freshly created directory (including the test directory), cutting and pasting your very code into R leaves me only with myLaTeXFile2.pdf and test/myLaTeXFile2.tex This is texi2dvi --version texi2dvi (GNU Texinfo 4.11) 1.104 Tim On Thu, Aug 19, 2010 at 01:55:06PM +0200, Marius Hofert wrote: Dear Tim, if I run ... ## Example 2: texi2dvi also deletes the generated .pdf require(tools) filepath - paste(getwd(),/test/myLaTeXFile2.tex,sep=) sink(file=filepath) cat(\\documentclass{article}\n) cat(\\usepackage[T1]{fontenc}\n) cat(\\usepackage[english]{babel}\n) cat(\\usepackage{blindtext}\n) cat(\\begin{document}\n) cat(\\blindtext[10]\n) cat(\\end{document}\n) sink() texi2dvi(filepath,pdf=TRUE,clean=TRUE,quiet=TRUE) ... on a fresh-and-clean working directory (and also no files in the subdirectory ./test), I only get the file myLaTeXFile2.tex in ./test, so *everything* (including the .pdf) is deleted :-( I work with R version 2.11.1 (2010-05-31) on a MacBook Pro running 10.6.4. Cheers, Marius On 2010-08-19, at 13:38 , Tim Gruene wrote: Dear Marius, yes, that's