Re: [R] venneuler (java?) color palette 0 - 1
Hi Paul, That's pretty much awesome. Thank you very much. And combined with the colorspace package functions- rainbow_hcl() and sequential_hcl() -make color selection easy. One thing i was digging for was a function that yields a color palette *and* the hcl() call needed to produce it. This would help me better understand the hcl format. So where i can get the RGB codes like this- rainbow_hcl(4) [1] #E495A5 #ABB065 #39BEB1 #ACA4E2 - which is fine for color specification, is there a palette function that might help obtain the hcl() call needed to produce a given palette? ie., the 'h', 'c' and 'l' (and 'alpha' if appropriate) values for a given color/shade?? Thanks again and in advance for any further pointers, Karl On 10/10/2010 10:41 PM, Paul Murrell wrote: Hi On 11/10/2010 9:01 a.m., Karl Brand wrote: Dear UseRs and DevelopeRs It would be helpful to see the color palette available in the venneuler() function. The relevant par of ?venneuler states: colors: colors of the circles as values between 0 and 1 -which explains color specification, but from what pallette? Short of trial and error, i'd really appreciate if some one could help me locate a 0 - 1 pallette for this function to aid with color selection. The color spec stored in the VennDiagram object is multiplied by 360 to give the hue component of an hcl() colour specification. For example, 0.5 would mean the colour hcl(0.5*360, 130, 60) Alternatively, you can control the colours when you call plot, for example, ... plot(ve, col=c(red, green, blue)) ... should work. Paul FWIW, i tried the below code and received the displayed error. I failed to turn up any solutions to this error... Any suggestions appreciated, Karl library(venneuler) ve- venneuler(c(A=1, B=2, C=3, AC=0.5, ABC=0.1)) class(ve) [1] VennDiagram ve$colors- c(red, green, blue) plot(ve) Error in col * 360 : non-numeric argument to binary operator -- Karl Brand k.br...@erasmusmc.nl Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3409 | F +31 (0)10 704 4743 | M +31 (0)642 777 268 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] venneuler (java?) color palette 0 - 1
On Mon, 11 Oct 2010, Karl Brand wrote: Hi Paul, That's pretty much awesome. Thank you very much. And combined with the colorspace package functions- rainbow_hcl() and sequential_hcl() -make color selection easy. One thing i was digging for was a function that yields a color palette *and* the hcl() call needed to produce it. This would help me better understand the hcl format. So where i can get the RGB codes like this- rainbow_hcl(4) [1] #E495A5 #ABB065 #39BEB1 #ACA4E2 - which is fine for color specification, is there a palette function that might help obtain the hcl() call needed to produce a given palette? ie., the 'h', 'c' and 'l' (and 'alpha' if appropriate) values for a given color/shade?? The ideas underlying rainbow_hcl(), sequential_hcl(), and diverge_hcl() are described in the following paper Achim Zeileis, Kurt Hornik, Paul Murrell (2009). Escaping RGBland: Selecting Colors for Statistical Graphics. Computational Statistics Data Analysis, 53(9), 3259-3270. doi:10.1016/j.csda.2008.11.033 A preprint PDF version of it is also available for download on my webpage. In the paper you see how the HCL coordinates for the different palettes are constructed. The functions rainbow_hcl(), sequential_hcl(), and diverge_hcl() are all direct translations of this, consisting just of a few lines of code. What may be somewhat confusing is that the functions call hex(polarLUV(L, C, H, ...)) instead of hcl(H, C, L, ...) which may yield slightly different results. The reason for this is that the polarLUV() implementation in colorspace predates the base R implementation in hcl(). hth, Z Thanks again and in advance for any further pointers, Karl On 10/10/2010 10:41 PM, Paul Murrell wrote: Hi On 11/10/2010 9:01 a.m., Karl Brand wrote: Dear UseRs and DevelopeRs It would be helpful to see the color palette available in the venneuler() function. The relevant par of ?venneuler states: colors: colors of the circles as values between 0 and 1 -which explains color specification, but from what pallette? Short of trial and error, i'd really appreciate if some one could help me locate a 0 - 1 pallette for this function to aid with color selection. The color spec stored in the VennDiagram object is multiplied by 360 to give the hue component of an hcl() colour specification. For example, 0.5 would mean the colour hcl(0.5*360, 130, 60) Alternatively, you can control the colours when you call plot, for example, ... plot(ve, col=c(red, green, blue)) ... should work. Paul FWIW, i tried the below code and received the displayed error. I failed to turn up any solutions to this error... Any suggestions appreciated, Karl library(venneuler) ve- venneuler(c(A=1, B=2, C=3, AC=0.5, ABC=0.1)) class(ve) [1] VennDiagram ve$colors- c(red, green, blue) plot(ve) Error in col * 360 : non-numeric argument to binary operator -- Karl Brand k.br...@erasmusmc.nl Department of Genetics Erasmus MC Dr Molewaterplein 50 3015 GE Rotterdam P +31 (0)10 704 3409 | F +31 (0)10 704 4743 | M +31 (0)642 777 268 __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] venneuler (java?) color palette 0 - 1
Hi On 11/10/2010 9:01 a.m., Karl Brand wrote: Dear UseRs and DevelopeRs It would be helpful to see the color palette available in the venneuler() function. The relevant par of ?venneuler states: colors: colors of the circles as values between 0 and 1 -which explains color specification, but from what pallette? Short of trial and error, i'd really appreciate if some one could help me locate a 0 - 1 pallette for this function to aid with color selection. The color spec stored in the VennDiagram object is multiplied by 360 to give the hue component of an hcl() colour specification. For example, 0.5 would mean the colour hcl(0.5*360, 130, 60) Alternatively, you can control the colours when you call plot, for example, ... plot(ve, col=c(red, green, blue)) ... should work. Paul FWIW, i tried the below code and received the displayed error. I failed to turn up any solutions to this error... Any suggestions appreciated, Karl library(venneuler) ve- venneuler(c(A=1, B=2, C=3, AC=0.5, ABC=0.1)) class(ve) [1] VennDiagram ve$colors- c(red, green, blue) plot(ve) Error in col * 360 : non-numeric argument to binary operator -- Dr Paul Murrell Department of Statistics The University of Auckland Private Bag 92019 Auckland New Zealand 64 9 3737599 x85392 p...@stat.auckland.ac.nz http://www.stat.auckland.ac.nz/~paul/ __ R-help@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
