[R] How to use read.xls in R
Hello there, In gdata package, read.xls is to be used for reading excel data (from windows). The following is my code:('C:/session/sampledata.xls' is where the file is stored) data1-read.xls('C:/session/sampledata.xls',sheet=1) and I got the following error message: Error in system(cmd, intern = !verbose) : perl not found Could you please tell me what I have done wrong and how I should do it? Thanks a lot Lisa Wang Princess Margaret Hospital, Toronto, Ca tel:416 946 4551 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
[R] how to produce this pic in R
Hello Everyone, I would like to produce a 3d par chart like the attached. How do I do it in R? thanks a lot Lisa Wang Princess Margaret hospital Toronto,Ca __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] 3d par chart
Hello Everyone, I would like to produce a 3d par chart like the attached. How do I do it in R? thanks a lot Lisa Wang Princess Margaret hospital Toronto,Ca__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] desmon library
Hello there, I would like to use Dr. simon's two stage design library. I found one source on the internet saying that it's available in desmon library but I can not find this package under R project. Please help with it. Thank you very much Lisa Wang Toronto,ca __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] how to change the trellis graph background color
Hello there, Please shed some light on how to change the background color of trellis graphic background. Thanks a lot lisa Wang Toronto, Ca __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] How to plot the xaxis label at 45 degree angle?
Hello there, I would like to plot a graph with the x axis's label displayed at a 45 angle to the x axis instead of horizontal to it as the label is very long. What should I do? Thank you for your help in advance Lisa Wang Princess Margaret Hospital Toronto, Ca __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] LCA in e1071
Hello there, In the e1071 package,'lca' function only works for binary data for Latent class analysis. Am I right? I would like to test the agreement amongst 6 raters for nominal data ona scale from 1-4, and conduct a latent class analysis. What package and what function may I use? Thank you very much Lisa Wang Princess Margaret Hospital tel: 416 946 4501 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] latent class modle for rater agreement
Hello there, I would like to test the agreement amongst 6 raters for nominal data on a scale from 1-4, and conduct a latent class analysis in R. How should the data be formatted and what code should I use? Thank you very much Lisa Wang Princess Margaret Hospital Biostatistics tel:416 946 4501 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] what can I do to make the lines straight
Hello there, I did a few graphics but only one looks like the attached. Why the line is not straight and how I can fix it? thank you very much Lisa Wang Princess Margaret Hospital Toronto, Canada__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] How to produce this graphic
Hello there, I would like to produce a plot of x-c(4,5,6),which is the mean of each group and y-c('groupA','groupB','groupC'). plot (x,y) can not produce any graphics because y is not numerical. What should I do to produce this graphic? Thank you in advance Lisa Wang Princess Margaret Hospital Toronto,Ca __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] How to simulate correlated data
Hello there, I would like to simulate X --Normal (20, 5) Y-- Normal (40, 10) and the correlation between X and Y is 0.6. How do I do it in R? Thank you very much Lisa Wang Msc. Princess Margaret Hospital Toronto, Ca __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] how to draw cumulative histogram
Hello there, I am using R to plot some cumulative histogram for my data. Please help in this case. Thank you Lisa Wang Princess Margaret Hospital Toronto phone 416 946 4501 ext.4883 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] how to impose the lines (Apply?)
Hello, I have data like the following (38 patients) each have a lot of record (some have more than others). I would like to plot time* pressure for each patient in the same plot. I try to write a function and then split the data by patients id and then sapply the function to the splited list, but I have difficulty to link the function to the data point. Please let me know if this is the rignt way to do it. Thanks a lot patientstime pressure 1 1 24 1 2 34 2 2 45 2 2.550 2 1.530 3 8 9 Lisa Wang Toronto, Ca tel: 416 946 4501 This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this e-mail may not be that of the organization.__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] 'mean' function
Hello, Could you please let me know how to see the mean function in R . The following is what I see when type in mean and enter mean function (x, ...) UseMethod(mean) environment: namespace:base I would like to see how the function is writen. Thanks a lot Lisa Wang Toronto, Ca This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this e-mail may not be that of the organization.__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] How to get to the varable in a list
Hello, I have a list lis as the following: $1 x1 x2 4 3 1 $2 x1 x2 3 3 2 5 3 2 $3 x1 x2 2 3 3 6 3 3 How do I get the x1 varible? for example ss1 This e-mail may contain confidential and/or privileged information for the sole use of the intended recipient. Any review or distribution by anyone other than the person for whom it was originally intended is strictly prohibited. If you have received this e-mail in error, please contact the sender and delete all copies. Opinions, conclusions or other information contained in this e-mail may not be that of the organization.__ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] predicted survival curve from a cox model
Hi there, I have a predictor varible class which is a categorical variable and a ' coxph' is used to find the coeffients. How can I plot the predicted survival proportion based on this model? Thanks Lisa Wang Princess Margaret Hospital Toronto tel 416 946 4501 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] How to sort a dataframe by one variable
Hi there, Could anybody help me on how to sort a dataframe by one variable in the dataframe? Thank you Lisa Wang Princess Margaret Hospital Toronto, Ca tel: 416 946 4501 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] question on boot
Hello there: Dear Dr. Murdoch, I'm a statistician at Princess Margaret Hospital. Could you please help me with the bootstrapping? Can boot function (along with boot.ci) handle multivariate statistics? My intention is that I want to group the outcome data and evaluate the proportion of patients who are positive for a marker within each group. (i.e. I have two variables, a predictor and an outcome. The predictor is continuous and the outcome is binary. I want a statistic which groups patients based on the predictor variable (0-10, 10-20, 20-30, etc;) and check the proportion of patients who are positive for the outcome variable within each group). Regards Lisa Wang Msc. Princess Margaret Hospital Toronto, Ca tel 416 9464501 ext. 5201 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Why can't I download window binary zip packages
Hello there, I tried so many times to download windows binary zip package but it told me that I don't have the access to do so. It worked for me a few months ago. Please help me with it. Thank you Lisa Wang Msc. Princess Margaret Hospital Toronto , Canada tel: (416) 946 4501 ext.5201 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] The survival rate at a certain time
Hello there, I am doing analysis on survival data. How do I pick out a probability of survival at a chosen landmark time(for example, 3 years, 4 years) from the result of survfit? or any other functions? As I know, the result of 'survfit' only have the probabilities for all event or cencor time. Thank you very much Lisa Wang Princess Margaret Hospital Toronto, Ca tel: 416-946-4501 ext.5201 __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] categorical varibles in coxph
Hello, I wonder when I do coxph in R: coxph( Surv(start, stop, event) ~ x, data=test) If x is a categorical varible (1,2,3,4,5), should I creat four dummy varibles for it? if yes, how can I get the overall p value on x other than for each dummy variable? Thanks Lisa Wang Princess Margaret Hospital Phone 416 946 4501 __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] Blom's approximation to rankits?
Hello, My name is Lisa and I'm a statistician at Princess Margare Hospital. I wonder if there is any function in R that calculate the Normal rankits based on Blom's approximation? Thank you very much Lisa Wang Msc. Princess Margaret hospital Toronto, Ca __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] GEE model
Hello there, My name is Lisa and I'm doing analysis using genelized linear model-GEE model because I have some repeated measurements on the same patients (in a bilateral eye disease case). It would be very appreciated if you could shed some light on what function to use in R. Thank you very much Lisa Wang Msc. Toronto,Ca __ [EMAIL PROTECTED] mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
[R] How to do a go to in a loop in R
Hi there, I'm writing a function which involves a loop. What to write in the ? place would allow it skips the for loop and goes to a[i]-0. a-b[s3,] if (nrow(a)==0) ? for (i in 1:nrow(a)){ a[i]-1 } a[i]-0 Lisa Wang Cancer Informatics, Ontario Cancer Institute/Princess Margaret Hospital, University Health Network; Email: [EMAIL PROTECTED] Phone: 416 946 4501 ext. 5201 Fax: 416 946 4619 __ [EMAIL PROTECTED] mailing list https://www.stat.math.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html