Re: [R] Installing R in Linux 8.0

2003-10-07 Thread Martyn Plummer
On Tue, 2003-10-07 at 01:00, Peter Dalgaard BSA wrote:
 Javier Arsuaga [EMAIL PROTECTED] writes:
 
  I am trying to install R in Linux 8.0 and I downloaded
  R-1.7.1-1.i386.rpm and did rpm -hiv R-1.7.1-1.i386.rpm 
  and I am getting the following message:
  
  warning: R-1.7.1-1.i386.rpm: V3 DSA signature: NOKEY, key ID
  97d3544e
  error: Failed dependencies:
  libblas.so.3 is needed by R-1.7.1-1
  
  Then I went and look for libblas (which is a linear algebra
  library) that I found in
  
  http://www.hklpg.org/RPM/libblas.so.3.html
  
  and downloaded
  blas-3.0-9.1mlx.i386.rpm
  
  Tried to do rpm -hiv blas-3.0-9.1mlx.i386.rpm 
  
  and got
  
  error: cannot get exclusive lock on /var/lib/rpm/Packages
  error: cannot open Packages index using db3 - Operation not permitted
  (1)
  error: cannot open Packages database in /var/lib/rpm
  
  Any suggestions, idea, help...?
 
 Wouldn't know about the locking issue -- usually means that you have
 two processes trying to do RPM things. However, the mlx in the RPM
 you found suggests that it may be for a non-RedHat distribution
 (muLinux??). There's supposed to be a blas in RedHat itself:
 
 [EMAIL PROTECTED] R]$ rpm -qf /usr/lib/libblas.so.3
 blas-3.0-18
 
 so I suggest you get that and install instead.  I believe Martyn
 recently compiled a list of RedHat packages that were necessary to
 install the RPMs and placed them somewhere easily findable.

That was for Red Hat 9. Javier appears to be using Red Hat 8.0 (NB
Javier NOT Linux 8.0). I haven't got round to doing a list for 8.0.

The R RPMS for Red Hat only depend on other packages that are
distributed with Red Hat Linux.  Your primary source for the required
RPMS should therefore be the set of CDs that you used to install Red
Hat, or the Red Hat web site:

http://www.redhat.com/download/mirror.html

The error message means that you forgot to become super user (root)
before attempting to install R.

Martyn

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[R] Installing R in Linux 8.0

2003-10-06 Thread Javier Arsuaga
I am trying to install R in Linux 8.0 and I downloaded
R-1.7.1-1.i386.rpm and did rpm -hiv R-1.7.1-1.i386.rpm 
and I am getting the following message:

warning: R-1.7.1-1.i386.rpm: V3 DSA signature: NOKEY, key ID
97d3544e
error: Failed dependencies:
libblas.so.3 is needed by R-1.7.1-1

Then I went and look for libblas (which is a linear algebra
library) that I found in

http://www.hklpg.org/RPM/libblas.so.3.html

and downloaded
blas-3.0-9.1mlx.i386.rpm

Tried to do rpm -hiv blas-3.0-9.1mlx.i386.rpm 

and got

error: cannot get exclusive lock on /var/lib/rpm/Packages
error: cannot open Packages index using db3 - Operation not permitted
(1)
error: cannot open Packages database in /var/lib/rpm

Any suggestions, idea, help...?

Thanks a lot

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Re: [R] Installing R in Linux 8.0

2003-10-06 Thread Peter Dalgaard BSA
Javier Arsuaga [EMAIL PROTECTED] writes:

 I am trying to install R in Linux 8.0 and I downloaded
 R-1.7.1-1.i386.rpm and did rpm -hiv R-1.7.1-1.i386.rpm 
 and I am getting the following message:
 
 warning: R-1.7.1-1.i386.rpm: V3 DSA signature: NOKEY, key ID
 97d3544e
 error: Failed dependencies:
 libblas.so.3 is needed by R-1.7.1-1
 
 Then I went and look for libblas (which is a linear algebra
 library) that I found in
 
 http://www.hklpg.org/RPM/libblas.so.3.html
 
 and downloaded
   blas-3.0-9.1mlx.i386.rpm
 
 Tried to do rpm -hiv blas-3.0-9.1mlx.i386.rpm 
 
   and got
 
 error: cannot get exclusive lock on /var/lib/rpm/Packages
 error: cannot open Packages index using db3 - Operation not permitted
 (1)
 error: cannot open Packages database in /var/lib/rpm
 
 Any suggestions, idea, help...?

Wouldn't know about the locking issue -- usually means that you have
two processes trying to do RPM things. However, the mlx in the RPM
you found suggests that it may be for a non-RedHat distribution
(muLinux??). There's supposed to be a blas in RedHat itself:

[EMAIL PROTECTED] R]$ rpm -qf /usr/lib/libblas.so.3
blas-3.0-18

so I suggest you get that and install instead.  I believe Martyn
recently compiled a list of RedHat packages that were necessary to
install the RPMs and placed them somewhere easily findable.

-- 
   O__   Peter Dalgaard Blegdamsvej 3  
  c/ /'_ --- Dept. of Biostatistics 2200 Cph. N   
 (*) \(*) -- University of Copenhagen   Denmark  Ph: (+45) 35327918
~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907

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Re: [R] Installing R in Linux 8.0

2003-10-06 Thread Marc Schwartz
On Mon, 2003-10-06 at 18:00, Peter Dalgaard BSA wrote:
 Javier Arsuaga [EMAIL PROTECTED] writes:
 
  I am trying to install R in Linux 8.0 and I downloaded
  R-1.7.1-1.i386.rpm and did rpm -hiv R-1.7.1-1.i386.rpm 
  and I am getting the following message:
  
  warning: R-1.7.1-1.i386.rpm: V3 DSA signature: NOKEY, key ID
  97d3544e
  error: Failed dependencies:
  libblas.so.3 is needed by R-1.7.1-1
  
  Then I went and look for libblas (which is a linear algebra
  library) that I found in
  
  http://www.hklpg.org/RPM/libblas.so.3.html
  
  and downloaded
  blas-3.0-9.1mlx.i386.rpm
  
  Tried to do rpm -hiv blas-3.0-9.1mlx.i386.rpm 
  
  and got
  
  error: cannot get exclusive lock on /var/lib/rpm/Packages
  error: cannot open Packages index using db3 - Operation not permitted
  (1)
  error: cannot open Packages database in /var/lib/rpm
  
  Any suggestions, idea, help...?
 
 Wouldn't know about the locking issue -- usually means that you have
 two processes trying to do RPM things. However, the mlx in the RPM
 you found suggests that it may be for a non-RedHat distribution
 (muLinux??). There's supposed to be a blas in RedHat itself:
 
 [EMAIL PROTECTED] R]$ rpm -qf /usr/lib/libblas.so.3
 blas-3.0-18
 
 so I suggest you get that and install instead.  I believe Martyn
 recently compiled a list of RedHat packages that were necessary to
 install the RPMs and placed them somewhere easily findable.


The RH BLAS RPM can be installed from the RPM Package Manager under
Engineering and Scientific Applications if you have the RH
installation CDs.

Alternatively, you can get it from RPMSeek at:

http://rpmseek.com/rpm/blas-3.0-18.i386.html?hl=comcs=blas:PN:0:0:0:0:212061

The lock message, assuming that it may be the result of multiple
processes or an incomplete process, can generally be removed by using:

rm -f /var/lib/rpm/__db*

as root.

HTH,

Marc Schwartz

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