Re: [R] changes in the structure of mer objects?
Hi Joris,
I suspect you somehow load an older version lme4 or Matrix than
you think you are loading.
Or then you have an lmer() function or a class definition
{from a saved workspace }
in your work space.
example(lmer) *must* run correctly for the 'lme4' package to get
onto CRAN at all,
hence it must be unique to your setup.
Maybe as a first step,
run R as R --vanilla ?
Regards,
Martin Maechler, ETH Zurich
joris == joris dewolf [EMAIL PROTECTED]
on Sun, 14 Jan 2007 19:15:43 +0100 writes:
joris Dear all,
joris I try to run the example of lmer and get the following error message.
library(lme4)
example(lmer)
lmer (fm1 - lmer(Reaction ~ Days + (Days | Subject), sleepstudy))
joris [[1]]
joris Error in get(x, envir, mode, inherits) : variable as.dpoMatrix was
not
joris found
joris This error message is similar to what I get with
joris other models. It looks like the mer class has a
joris slightly different structure. Anybody an idea how to
joris solve this?
joris I am using R 2.4.1 under linux and the latest releases of lme4 and
Matrix
joris lme4_0.9975-10
joris Matrix_0.9975-8
version
joris _
joris platform x86_64-unknown-linux-gnu
joris arch x86_64
joris os linux-gnu
joris system x86_64, linux-gnu
joris status
joris major 2
joris minor 4.1
joris year 2006
joris month 12
joris day18
joris svn rev40228
joris language R
joris version.string R version 2.4.1 (2006-12-18)
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] changes in the structure of mer objects?
Thanks Martin,
R --vanilla did the trick.
By the way, is there a way to check which version of a lme4 or Matrix I am
using in a certain instance of R?
We are running multiple versions of R on the same server until we are sure
all our operational code is behaving well under a new version of R or of a
package.
Now I start doubting if we ever have been testing what we were intendng to
test...
Joris
[EMAIL PROTECTED] wrote on 15/01/2007 14:00:12:
Hi Joris,
I suspect you somehow load an older version lme4 or Matrix than
you think you are loading.
Or then you have an lmer() function or a class definition
{from a saved workspace }
in your work space.
example(lmer) *must* run correctly for the 'lme4' package to get
onto CRAN at all,
hence it must be unique to your setup.
Maybe as a first step,
run R as R --vanilla ?
Regards,
Martin Maechler, ETH Zurich
joris == joris dewolf [EMAIL PROTECTED]
on Sun, 14 Jan 2007 19:15:43 +0100 writes:
joris Dear all,
joris I try to run the example of lmer and get the following
error message.
library(lme4)
example(lmer)
lmer (fm1 - lmer(Reaction ~ Days + (Days | Subject), sleepstudy))
joris [[1]]
joris Error in get(x, envir, mode, inherits) : variable as.
dpoMatrix was not
joris found
joris This error message is similar to what I get with
joris other models. It looks like the mer class has a
joris slightly different structure. Anybody an idea how to
joris solve this?
joris I am using R 2.4.1 under linux and the latest releases of
lme4 and Matrix
joris lme4_0.9975-10
joris Matrix_0.9975-8
version
joris _
joris platform x86_64-unknown-linux-gnu
joris arch x86_64
joris os linux-gnu
joris system x86_64, linux-gnu
joris status
joris major 2
joris minor 4.1
joris year 2006
joris month 12
joris day18
joris svn rev40228
joris language R
joris version.string R version 2.4.1 (2006-12-18)
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] changes in the structure of mer objects?
HaroldD == Doran, Harold [EMAIL PROTECTED]
on Mon, 15 Jan 2007 09:18:12 -0500 writes:
HaroldD help(package='lme4') will tell you
yes, or with more input but less output
packageDescription(lme4)$Version
Further note
sessionInfo()
which gives you all versions of all attached packages and more
and which is really *the* thing to be used in such
problem-report e-mails.
Martin
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of
[EMAIL PROTECTED]
Sent: Monday, January 15, 2007 8:37 AM
To: Martin Maechler
Cc: [EMAIL PROTECTED]; r-help@stat.math.ethz.ch;
[EMAIL PROTECTED]
Subject: Re: [R] changes in the structure of mer objects?
Thanks Martin,
R --vanilla did the trick.
By the way, is there a way to check which version of a lme4
or Matrix I am using in a certain instance of R?
We are running multiple versions of R on the same server
until we are sure all our operational code is behaving well
under a new version of R or of a package.
Now I start doubting if we ever have been testing what we
were intendng to test...
Joris
[EMAIL PROTECTED] wrote on 15/01/2007 14:00:12:
Hi Joris,
I suspect you somehow load an older version lme4 or Matrix than you
think you are loading.
Or then you have an lmer() function or a class definition {from a
saved workspace } in your work space.
example(lmer) *must* run correctly for the 'lme4' package
to get onto
CRAN at all, hence it must be unique to your setup.
Maybe as a first step,
run R as R --vanilla ?
Regards,
Martin Maechler, ETH Zurich
joris == joris dewolf [EMAIL PROTECTED]
on Sun, 14 Jan 2007 19:15:43 +0100 writes:
joris Dear all,
joris I try to run the example of lmer and get the following
error message.
library(lme4)
example(lmer)
lmer (fm1 - lmer(Reaction ~ Days + (Days | Subject),
sleepstudy))
joris [[1]]
joris Error in get(x, envir, mode, inherits) : variable as.
dpoMatrix was not
joris found
joris This error message is similar to what I get with
joris other models. It looks like the mer class has a
joris slightly different structure. Anybody an idea how to
joris solve this?
joris I am using R 2.4.1 under linux and the latest releases of
lme4 and Matrix
joris lme4_0.9975-10
joris Matrix_0.9975-8
version
joris _
joris platform x86_64-unknown-linux-gnu
joris arch x86_64
joris os linux-gnu
joris system x86_64, linux-gnu
joris status
joris major 2
joris minor 4.1
joris year 2006
joris month 12
joris day18
joris svn rev40228
joris language R
joris version.string R version 2.4.1 (2006-12-18)
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
Re: [R] changes in the structure of mer objects?
help(package='lme4') will tell you
-Original Message-
From: [EMAIL PROTECTED]
[mailto:[EMAIL PROTECTED] On Behalf Of
[EMAIL PROTECTED]
Sent: Monday, January 15, 2007 8:37 AM
To: Martin Maechler
Cc: [EMAIL PROTECTED]; r-help@stat.math.ethz.ch;
[EMAIL PROTECTED]
Subject: Re: [R] changes in the structure of mer objects?
Thanks Martin,
R --vanilla did the trick.
By the way, is there a way to check which version of a lme4
or Matrix I am using in a certain instance of R?
We are running multiple versions of R on the same server
until we are sure all our operational code is behaving well
under a new version of R or of a package.
Now I start doubting if we ever have been testing what we
were intendng to test...
Joris
[EMAIL PROTECTED] wrote on 15/01/2007 14:00:12:
Hi Joris,
I suspect you somehow load an older version lme4 or Matrix than you
think you are loading.
Or then you have an lmer() function or a class definition {from a
saved workspace } in your work space.
example(lmer) *must* run correctly for the 'lme4' package
to get onto
CRAN at all, hence it must be unique to your setup.
Maybe as a first step,
run R as R --vanilla ?
Regards,
Martin Maechler, ETH Zurich
joris == joris dewolf [EMAIL PROTECTED]
on Sun, 14 Jan 2007 19:15:43 +0100 writes:
joris Dear all,
joris I try to run the example of lmer and get the following
error message.
library(lme4)
example(lmer)
lmer (fm1 - lmer(Reaction ~ Days + (Days | Subject),
sleepstudy))
joris [[1]]
joris Error in get(x, envir, mode, inherits) : variable as.
dpoMatrix was not
joris found
joris This error message is similar to what I get with
joris other models. It looks like the mer class has a
joris slightly different structure. Anybody an idea how to
joris solve this?
joris I am using R 2.4.1 under linux and the latest releases of
lme4 and Matrix
joris lme4_0.9975-10
joris Matrix_0.9975-8
version
joris _
joris platform x86_64-unknown-linux-gnu
joris arch x86_64
joris os linux-gnu
joris system x86_64, linux-gnu
joris status
joris major 2
joris minor 4.1
joris year 2006
joris month 12
joris day18
joris svn rev40228
joris language R
joris version.string R version 2.4.1 (2006-12-18)
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[R] changes in the structure of mer objects?
Dear all, I try to run the example of lmer and get the following error message. library(lme4) example(lmer) lmer (fm1 - lmer(Reaction ~ Days + (Days | Subject), sleepstudy)) [[1]] Error in get(x, envir, mode, inherits) : variable as.dpoMatrix was not found This error message is similar to what I get with other models. It looks like the mer class has a slightly different structure. Anybody an idea how to solve this? I am using R 2.4.1 under linux and the latest releases of lme4 and Matrix lme4_0.9975-10 Matrix_0.9975-8 version _ platform x86_64-unknown-linux-gnu arch x86_64 os linux-gnu system x86_64, linux-gnu status major 2 minor 4.1 year 2006 month 12 day18 svn rev40228 language R version.string R version 2.4.1 (2006-12-18) Thanks Joris De Wolf Phone: +32 9 2429155, E-Mail: [EMAIL PROTECTED] Postal Address: CropDesign N.V. Technologiepark 3, 9052 Gent Belgium __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
