Re: [R] Annotation metadata "kills" help.search
Seth Falcon <[EMAIL PROTECTED]> writes:
> Hi Gerard,
>
> "Gerard Tromp" <[EMAIL PROTECTED]> writes:
>> OS: Windows
>> R 2.0.1
>>
>> As of about a week ago the help.search function dies when used in the simple
>> help.search("something") usage.
>> The error is
>> Error in rbind(...) : number of columns of matrices must match (see arg 203)
>>
>> After some effort I have traced it down to the annotation packages. I
>> installed
>> GO, KEGG, mgu74[abc]v2 and hgu133plus2 all version 1.7.0
>
> We (the Bioconductor team) will look into this and see if we can
> reproduce what you are reporting. This is the first we've heard of
> difficulties with the help system caused by the annotation data
> packages.
We are not able to reproduce this issue. If you reinstall the
annotation packages does the error reappear?
If so, an exact transcript of the commands entered, their output, and
the output of traceback() right after the error would be helpful ---
and it would be best to move the discussion to the bioconductor list.
+ seth
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Re: [R] Annotation metadata "kills" help.search
Hi Gerard,
"Gerard Tromp" <[EMAIL PROTECTED]> writes:
> OS: Windows
> R 2.0.1
>
> As of about a week ago the help.search function dies when used in the simple
> help.search("something") usage.
> The error is
> Error in rbind(...) : number of columns of matrices must match (see arg 203)
>
> After some effort I have traced it down to the annotation packages. I
> installed
> GO, KEGG, mgu74[abc]v2 and hgu133plus2 all version 1.7.0
We (the Bioconductor team) will look into this and see if we can
reproduce what you are reporting. This is the first we've heard of
difficulties with the help system caused by the annotation data
packages.
+ seth
__
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Re: [R] Annotation metadata "kills" help.search
This happened to me in R 2.1.0 (I forget which specific version
since I now have March 27th) on Windows XP which I traced to
package dataRep. Once I removed that package help.search
worked again.
On Mon, 28 Mar 2005 22:08:58 -0500, Gerard Tromp
<[EMAIL PROTECTED]> wrote:
> Greetings!
>
> OS: Windows
> R 2.0.1
>
> Before anyone flames -- I tried to query this on the R searchable web site
> and using google and did not find anything applicable.
>
> As of about a week ago the help.search function dies when used in the simple
> help.search("something") usage.
> The error is
> Error in rbind(...) : number of columns of matrices must match (see arg 203)
>
> After some effort I have traced it down to the annotation packages. I
> installed
> GO, KEGG, mgu74[abc]v2 and hgu133plus2 all version 1.7.0
>
> When I move these out of the library directory, help.search() functions
> correctly again.
>
> I have not tracked it any further -- just wanted to know if anyone else had
> noticed it.
>
> Gerard Tromp
>
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> R-help@stat.math.ethz.ch mailing list
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>
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