Re: [R] Error to install fMultivar package
Hello, I tried the first issue of Dirk and it was all right: This would be quicker: $ sudo apt-get install r-cran-fmulitvar (I've already had enabled the Universe repositories in /etc/apt/sources.list. ) I think it was realy related with some lib and packages dependencies. Thank's for all! Gilberto. Em (10:18:04), Dirk Eddelbuettel escreveu: On Wed, Dec 13, 2006 at 09:34:04AM -0300, gsmatos1 wrote: Content-Description: Mail message body Hi, I tried to install fMultivar package but an error occurs that I could not understand. (I've been worked with linux / Ubuntu 6.06 LTS) This would be quicker: $ sudo apt-get install r-cran-fmulitvar (if you enabled the Universe repositories in /etc/apt/sources.list). install.packages(fMultivar) ... trying URL 'http://lmq.esalq.usp.br/CRAN/src/contrib/fMultivar_221.10065.tar.gz' Content type 'application/x-gzip' length 1152747 bytes opened URL == downloaded 1125Kb * Installing *source* package 'fMultivar' ... ** libs gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 00A-randomF77.c -o 00A-randomF77.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 00B-GarchBEKK.c -o 00B-GarchBEKK.o g77 -fpic -g -O2 -c 42A-1ReggressionModelling.f -o 42A-1ReggressionModelling.o g77 -fpic -g -O2 -c 42A-2RegressionModelling.f -o 42A-2RegressionModelling.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 42A-3RegressionModelling.c -o 42A-3RegressionModelling.o g77 -fpic -g -O2 -c 42B-RegressionTests.f -o 42B-RegressionTests.o g77 -fpic -g -O2 -c 46A-VectorMatrixAddon.f -o 46A-VectorMatrixAddon.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 46B-MissingValues.c -o 46B-MissingValues.og77 -fpic -g -O2 -c 47B-MultivariateDistribution.f -o 47B-MultivariateDistribution.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c runfunc.c -o runfunc.o gcc -shared -o fMultivar.so 00A-randomF77.o 00B-GarchBEKK.o 42A-1ReggressionModelling.o 42A-2RegressionModelling.o 42A-3RegressionModelling.o 42B-RegressionTests.o 46A-VectorMatrixAddon.o 46B-MissingValues.o 47B-MultivariateDistribution.o runfunc.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [fMultivar.so] Error 1 ERROR: compilation failed for package 'fMultivar' ** Removing '/usr/local/lib/R/site-library/fMultivar' The downloaded packages are in /tmp/RtmpXxDoFd/downloaded_packages Warning message: installation of package 'fMultivar' had non-zero exit status in: install.packages(fMultivar) It is a FAQ for Debian and Ubuntu -- you forgot to install r-base-dev which provides a fairly complete development emv. for R on Debian / Ubuntu, so do $ sudo apt-get install r-base-dev Besides, given that there _is_ a source package, you could also use its information on Build-Dependencies: $ sudo apt-get build-dep r-cran-fmultivar Hth, Dirk Thanks in advance for any help! Gilberto. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Error to install fMultivar package
Just a few tip, I don't know very much about ubuntu. Relevant is: /usr/bin/ld: cannot find -lblas-3 It means, it doesn't find the library blas-3 (libblas-3). Maybe they are installed on your system but in a non-standard dir. Look around (locate blas, if updatedb is set on your system); if you find them, a symlink could fix the issue; if not, maybe you need to install atlas or the atlas-dev, something like: http://packages.ubuntulinux.org/dapper/devel/atlas3-sse2-dev (sorry, I don't know if dapper == 6.06, but I don't think it can vary so much) Just give a try, and use apt to download all the required libs. Try also to add dependencies=TRUE to install.packages(). Does it help? Scionforbai __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
Re: [R] Error to install fMultivar package
On Wed, Dec 13, 2006 at 09:34:04AM -0300, gsmatos1 wrote: Content-Description: Mail message body Hi, I tried to install fMultivar package but an error occurs that I could not understand. (I've been worked with linux / Ubuntu 6.06 LTS) This would be quicker: $ sudo apt-get install r-cran-fmulitvar (if you enabled the Universe repositories in /etc/apt/sources.list). install.packages(fMultivar) Warning in install.packages(fMultivar) : argument 'lib' is missing: using /usr /local/lib/R/site-library --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk interface ... done trying URL 'http://lmq.esalq.usp.br/CRAN/src/contrib/fMultivar_221.10065.tar.gz' Content type 'application/x-gzip' length 1152747 bytes opened URL == downloaded 1125Kb * Installing *source* package 'fMultivar' ... ** libs gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 00A-randomF77.c -o 00A-randomF77.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 00B-GarchBEKK.c -o 00B-GarchBEKK.o g77 -fpic -g -O2 -c 42A-1ReggressionModelling.f -o 42A-1ReggressionModelling.o g77 -fpic -g -O2 -c 42A-2RegressionModelling.f -o 42A-2RegressionModelling.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 42A-3RegressionModelling.c -o 42A-3RegressionModelling.o g77 -fpic -g -O2 -c 42B-RegressionTests.f -o 42B-RegressionTests.o g77 -fpic -g -O2 -c 46A-VectorMatrixAddon.f -o 46A-VectorMatrixAddon.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c 46B-MissingValues.c -o 46B-MissingValues.og77 -fpic -g -O2 -c 47B-MultivariateDistribution.f -o 47B-MultivariateDistribution.o gcc -I/usr/share/R/include -I/usr/share/R/include -fpic -g -O2 -std=gnu99 -c runfunc.c -o runfunc.o gcc -shared -o fMultivar.so 00A-randomF77.o 00B-GarchBEKK.o 42A-1ReggressionModelling.o 42A-2RegressionModelling.o 42A-3RegressionModelling.o 42B-RegressionTests.o 46A-VectorMatrixAddon.o 46B-MissingValues.o 47B-MultivariateDistribution.o runfunc.o -lblas-3 -lg2c -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lblas-3 collect2: ld returned 1 exit status make: *** [fMultivar.so] Error 1 ERROR: compilation failed for package 'fMultivar' ** Removing '/usr/local/lib/R/site-library/fMultivar' The downloaded packages are in /tmp/RtmpXxDoFd/downloaded_packages Warning message: installation of package 'fMultivar' had non-zero exit status in: install.packages(fMultivar) It is a FAQ for Debian and Ubuntu -- you forgot to install r-base-dev which provides a fairly complete development emv. for R on Debian / Ubuntu, so do $ sudo apt-get install r-base-dev Besides, given that there _is_ a source package, you could also use its information on Build-Dependencies: $ sudo apt-get build-dep r-cran-fmultivar Hth, Dirk Thanks in advance for any help! Gilberto. __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. -- Hell, there are no rules here - we're trying to accomplish something. -- Thomas A. Edison __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code.
