Re: [R] R-2.3.0 make error
Wuming Gong [EMAIL PROTECTED] writes: Dear Peter, $ uname -a Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006 x86_64 x86_64 x86_64 GNU/Linux When ./configure, I did not claim any options... Wuming Hm. Which are your compilers? I have (in etc/Makeconf). AR = ar BLAS_LIBS = C_VISIBILITY = -fvisibility=hidden CC = gcc CFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona CPICFLAGS = -fpic CPPFLAGS = -I/usr/local/include CXX = g++ CXXCPP = g++ -E CXXFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona CXXPICFLAGS = -fpic DYLIB_EXT = .so DYLIB_LD = gcc DYLIB_LDFLAGS = -shared DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS) ECHO_C = ECHO_N = -n ECHO_T = F77 = gfortran F77_VISIBILITY = -fvisibility=hidden FC = f95 FCFLAGS = -g -O2 FFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona FLIBS = -lgfortran -lm -lgcc_s FCPICFLAGS = -fpic FPICFLAGS = -fpic JAVA = /usr/bin/java JAVA_HOME = /usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre JAVA_LD_LIBRARY_PATH = JAVA_LIBS = -L -ljvm LAPACK_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRlapack LIBM = -lm LIBR = LIBS = -ldl -lm LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool LDFLAGS = -L/usr/local/lib64 R_ARCH = RANLIB = ranlib SAFE_FFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona -ffloat-store SED = /bin/sed SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = f95 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) TCLTK_CPPFLAGS = -I/usr/include -I/usr/include -I/usr/X11R6/include TCLTK_LIBS = -L/usr/lib64 -ltcl8.4 -L/usr/lib64 -ltk8.4 -L/usr/X11R6/lib64 -lX11 On 01 May 2006 19:30:48 +0200, Peter Dalgaard [EMAIL PROTECTED] wrote: Wuming Gong [EMAIL PROTECTED] writes: Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_': /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11079):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x110de):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11146):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x1116e):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5588: more undefined references to `z_abs' follow collect2: ld returned 1 exit status make[3]: *** [R.bin] Error 1 make[3]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src' make: *** [R] Error 1 Is there any way to fix this problem? Hmm... It's not happening to me on a similar setup $ uname -a Linux janus 2.6.16-1.2096_FC4smp #1 SMP Wed Apr 19 16:01:54 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o
Re: [R] R-2.3.0 make error
When I compile cmpxblas.f under gfortran, I do not get a dependence on z_abs, but I do when I compile it under g77. So I think a mixture of compilers has been used here. z_abs is an entry point in -lg2c not -lgfortran On Mon, 1 May 2006, Peter Dalgaard wrote: Wuming Gong [EMAIL PROTECTED] writes: Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_': /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11079):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x110de):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11146):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x1116e):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5588: more undefined references to `z_abs' follow collect2: ld returned 1 exit status make[3]: *** [R.bin] Error 1 make[3]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src' make: *** [R] Error 1 Is there any way to fix this problem? Hmm... It's not happening to me on a similar setup $ uname -a Linux janus 2.6.16-1.2096_FC4smp #1 SMP Wed Apr 19 16:01:54 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lblas -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm Apparently, you are configuring without a BLAS library, but it is not like I get into trouble by removing them from my setup. I'm puzzled. You might check whether you need to upgrade something in your system. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help
Re: [R] R-2.3.0 make error
Hi Peter, This is mine: AR = ar BLAS_LIBS = C_VISIBILITY = -fvisibility=hidden CC = gcc CFLAGS = -g -O2 -std=gnu99 CPICFLAGS = -fpic CPPFLAGS = -I/usr/local/include CXX = g++ CXXCPP = g++ -E CXXFLAGS = -g -O2 CXXPICFLAGS = -fpic DYLIB_EXT = .so DYLIB_LD = gcc DYLIB_LDFLAGS = -shared DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS) ECHO_C = ECHO_N = -n ECHO_T = F77 = gfortran F77_VISIBILITY = -fvisibility=hidden FC = f95 FCFLAGS = -g -O2 FFLAGS = -g -O2 FLIBS = -lgfortran -lm -lgcc_s FCPICFLAGS = -fpic FPICFLAGS = -fpic JAVA = /usr/bin/java JAVA_HOME = /usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre JAVA_LD_LIBRARY_PATH = JAVA_LIBS = -L -ljvm LAPACK_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRlapack LIBM = -lm LIBR = LIBS = -ldl -lm LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool LDFLAGS = -L/usr/local/lib64 R_ARCH = RANLIB = ranlib SAFE_FFLAGS = -g -O2 -ffloat-store SED = /bin/sed SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = f95 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) TCLTK_CPPFLAGS = TCLTK_LIBS = On 02 May 2006 08:51:21 +0200, Peter Dalgaard [EMAIL PROTECTED] wrote: Wuming Gong [EMAIL PROTECTED] writes: Dear Peter, $ uname -a Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006 x86_64 x86_64 x86_64 GNU/Linux When ./configure, I did not claim any options... Wuming Hm. Which are your compilers? I have (in etc/Makeconf). AR = ar BLAS_LIBS = C_VISIBILITY = -fvisibility=hidden CC = gcc CFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona CPICFLAGS = -fpic CPPFLAGS = -I/usr/local/include CXX = g++ CXXCPP = g++ -E CXXFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona CXXPICFLAGS = -fpic DYLIB_EXT = .so DYLIB_LD = gcc DYLIB_LDFLAGS = -shared DYLIB_LINK = $(DYLIB_LD) $(DYLIB_LDFLAGS) $(LDFLAGS) ECHO_C = ECHO_N = -n ECHO_T = F77 = gfortran F77_VISIBILITY = -fvisibility=hidden FC = f95 FCFLAGS = -g -O2 FFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona FLIBS = -lgfortran -lm -lgcc_s FCPICFLAGS = -fpic FPICFLAGS = -fpic JAVA = /usr/bin/java JAVA_HOME = /usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre JAVA_LD_LIBRARY_PATH = JAVA_LIBS = -L -ljvm LAPACK_LIBS = -L$(R_HOME)/lib$(R_ARCH) -lRlapack LIBM = -lm LIBR = LIBS = -ldl -lm LIBTOOL = $(SHELL) $(R_HOME)/bin/libtool LDFLAGS = -L/usr/local/lib64 R_ARCH = RANLIB = ranlib SAFE_FFLAGS = -O2 -g -pipe -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -m64 -mtune=nocona -ffloat-store SED = /bin/sed SHELL = /bin/sh SHLIB_CFLAGS = SHLIB_CXXFLAGS = SHLIB_CXXLD = g++ SHLIB_CXXLDFLAGS = -shared SHLIB_EXT = .so SHLIB_FCLD = f95 SHLIB_FCLDFLAGS = -shared SHLIB_FFLAGS = SHLIB_LD = gcc SHLIB_LDFLAGS = -shared SHLIB_LIBADD = SHLIB_LINK = $(SHLIB_LD) $(SHLIB_LDFLAGS) $(LDFLAGS) TCLTK_CPPFLAGS = -I/usr/include -I/usr/include -I/usr/X11R6/include TCLTK_LIBS = -L/usr/lib64 -ltcl8.4 -L/usr/lib64 -ltk8.4 -L/usr/X11R6/lib64 -lX11 On 01 May 2006 19:30:48 +0200, Peter Dalgaard [EMAIL PROTECTED] wrote: Wuming Gong [EMAIL PROTECTED] writes: Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_': /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs'
Re: [R] R-2.3.0 make error
Wuming Gong [EMAIL PROTECTED] writes: Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_': /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11079):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x110de):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11146):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x1116e):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5588: more undefined references to `z_abs' follow collect2: ld returned 1 exit status make[3]: *** [R.bin] Error 1 make[3]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src' make: *** [R] Error 1 Is there any way to fix this problem? Hmm... It's not happening to me on a similar setup $ uname -a Linux janus 2.6.16-1.2096_FC4smp #1 SMP Wed Apr 19 16:01:54 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lblas -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm Apparently, you are configuring without a BLAS library, but it is not like I get into trouble by removing them from my setup. I'm puzzled. You might check whether you need to upgrade something in your system. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] R-2.3.0 make error
Dear Peter, $ uname -a Linux bl3 2.6.15-1.1833_FC4smp #1 SMP Wed Mar 1 23:55:52 EST 2006 x86_64 x86_64 x86_64 GNU/Linux When ./configure, I did not claim any options... Wuming On 01 May 2006 19:30:48 +0200, Peter Dalgaard [EMAIL PROTECTED] wrote: Wuming Gong [EMAIL PROTECTED] writes: Dear list, When compiling the R-2.3.0 on FC4 x86_64, I got the following errors: make[3]: Entering directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm ../appl/libappl.a(cmplxblas.o)(.text+0x1100a): In function `zrotg_': /project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5579: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11069):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11079):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5585: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x110de):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x11146):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5586: undefined reference to `z_abs' ../appl/libappl.a(cmplxblas.o)(.text+0x1116e):/project/scratch3/ligroup/wuming/src/R-2.3.0/src/appl/cmplxblas.f:5588: more undefined references to `z_abs' follow collect2: ld returned 1 exit status make[3]: *** [R.bin] Error 1 make[3]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/project/scratch3/ligroup/wuming/src/R-2.3.0/src' make: *** [R] Error 1 Is there any way to fix this problem? Hmm... It's not happening to me on a similar setup $ uname -a Linux janus 2.6.16-1.2096_FC4smp #1 SMP Wed Apr 19 16:01:54 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux gcc -Wl,--export-dynamic -L/usr/local/lib64 -o R.bin Rmain.o CConverters.o CommandLineArgs.o Rdynload.o Renviron.o RNG.o apply.o arithmetic.o apse.o array.o attrib.o base.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cov.o cum.o dcf.o datetime.o debug.o deparse.o deriv.o dotcode.o dounzip.o dstruct.o duplicate.o engine.o envir.o errors.o eval.o format.o fourier.o gevents.o gram.o gram-ex.o graphics.o identical.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o model.o names.o objects.o optim.o optimize.o options.o par.o paste.o pcre.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o random.o regex.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o size.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o unique.o util.o version.o vfonts.o xxxpr.o ../unix/libunix.a ../appl/libappl.a ../nmath/libnmath.a -lblas -lgfortran -lm -lgcc_s ../extra/zlib/libz.a ../extra/bzip2/libbz2.a ../extra/pcre/libpcre.a -lreadline -lncurses -ldl -lm Apparently, you are configuring without a BLAS library, but it is not like I get into trouble by removing them from my setup. I'm puzzled. You might check whether you need to upgrade something in your system. -- O__ Peter Dalgaard Øster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~ - ([EMAIL PROTECTED]) FAX: (+45) 35327907 __ R-help@stat.math.ethz.ch mailing list
