Re: [R] Rd.sty error

2005-05-03 Thread Prof Brian Ripley 
I don't see an error message here.
And what is `texShop'?
I think we need (a lot) more details of what you actually are doing.
On Tue, 3 May 2005, Ingmar Visser wrote:
I had written a vignette and included a
\usepackage{Rd} command to make it possible to include
latex'ed Rd files in the vignette. However, when loading
Rd.sty texShop produces the following error:
l. 180 ...d}[1]{\ifmmode\bm{#1}\else\textbf{#1}\fi}
This is on Max OS X 3.9 and R 2.0.1
Has anyone seen this before and/or is it problematic? I'm not sure whether
the output suffers from this but it does create a problem with R CMD check
because tex produces a warning/error there.
--
Brian D. Ripley,  [EMAIL PROTECTED]
Professor of Applied Statistics,  http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel:  +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax:  +44 1865 272595
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Re: [R] Rd.sty error

2005-05-03 Thread Ingmar Visser 
Dear Prof Ripley,

The problem is this:
I create a package with a vignette which also includes some of the help
files from the package. These are \input'ed into the vignette (after
generating them with Rdconv -t=latex. After running sweave, I get the
package-manual.tex file which runs succesfully through my tex application
(texshop is a mac os x tex gui that uses tetex), albeit with \batchmode on
to catch the error described below.
 
The package successfully passes  R CMD check. However, when I subsequently R
CMD build the package I get the following message:

* creating vignettes ... ERROR
/Library/Frameworks/R.framework/Resources/bin/texi2dvi: pdflatex exited with
bad status, quitting.
/Library/Frameworks/R.framework/Resources/bin/texi2dvi: see
depmix-manual.log for errors.
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) :
running texi2dvi on depmix-manual.tex failed
Execution halted

> version
 _ 
platform powerpc-apple-darwin6.8
arch powerpc   
os   darwin6.8 
system   powerpc, darwin6.8
status 
major2 
minor0.1   
year 2004  
month11
day  15
language R 


The error I described earlier appears after this line:
/usr/local/teTeX/share/texmf.tetex/tex/latex/url/url.sty

This error does not occur when I comment out \usepackage{Rd}, although then
of course many other errors occur such as \code and \pkg being undefined.

Any hints as to where to go from here are very welcome!

best, ingmar

The depmix-manual.log reads as follows:

This is pdfeTeX, Version 3.141592-1.20a-2.2 (Web2C 7.5.3) (format=pdflatex
2004.11.26)  3 MAY 2005 17:17
entering extended mode
**\nonstopmode \input
/Users/ivisser/Documents/Projects/HMM/depmixprog/depmix/i
nst/doc/depmix-manual.tex

(/Users/ivisser/Documents/Projects/HMM/depmixprog/depmix/inst/doc/depmix-man
ual
.tex (/usr/local/teTeX/share/texmf.tetex/tex/latex/base/report.cls
Document Class: report 2004/02/16 v1.4f Standard LaTeX document class
(/usr/local/teTeX/share/texmf.tetex/tex/latex/base/size10.clo
File: size10.clo 2004/02/16 v1.4f Standard LaTeX file (size option)
)
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\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/usr/local/teTeX/share/texmf.tetex/tex/latex/amsmath/amsmath.sty
Package: amsmath 2000/07/18 v2.13 AMS math features
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For additional information on amsmath, use the `?' option.
(/usr/local/teTeX/share/texmf.tetex/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01

(/usr/local/teTeX/share/texmf.tetex/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
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(/usr/local/teTeX/share/texmf.tetex/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
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)
(/usr/local/teTeX/share/texmf.tetex/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
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LaTeX Info: Redefining \frac on input line 211.
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LaTeX Info: Redefining \overline on input line 307.
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LaTeX Info: Redefining \ldots on input line 379.
LaTeX Info: Redefining \dots on input line 382.
LaTeX Info: Redefining \cdots on input line 467.
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LaTeX Font Info:Redeclaring font encoding OML on input line 567.
LaTeX Font Info:Redeclaring font encoding OMS on input line 568.
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\multlinegap=\skip44
\multlinetaggap=\skip45
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LaTeX Info: Redefining \[ on input line 2666.
LaTeX Info: Redefining \] on input line 2667.
)
(/usr/local/teTeX/share/texmf.tetex/tex/latex/amsfonts/amsfonts.sty
Package: amsfonts 2001/10/25 v2.2f
\symAMSa=\mathgroup4
\symAMSb=\mathgroup5
LaTeX Font Info:Overwriting math alphabet `\mathfrak' in version `bold'
(Font)  U/euf/m/n --> U/euf/b/n on input line 132.
)
(/usr/local/teTeX/share/texmf.tetex/tex/latex/amscls/amsthm.sty
Package: amsthm 2004/08/06 v2.20
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(/Library/Frameworks/R.framework/Resources/share/texmf/Sweave.sty
(/usr/local/t
eTeX/share/texmf.tetex/tex/latex/base/fontenc.sty
Package: fontenc 2004/02/22 v1.99f Standard LaTeX package
(/usr/local/teTeX/share/texmf.tetex/tex/latex/base/t1enc.def
File: t1enc.def 2004/02/22 v1.99f Standard LaTeX file
LaTeX Font Info:Redeclaring font encoding T1 on input line 43.
)) (/usr/local/teTeX/