Re: [R] how to set environment variables?
On Thu, 20 Oct 2005, Andreas Zankl wrote: The help file of the R bitmap function says that I have to set the environment variable R_GSCMD to the path of my Ghostscript installation. Actually, it does not say that. It says you _can_ specify the path to your executable (not the installation) that way. It will work without doing so if the executable 'gs' (on a Unix-alike) is on your path, which it normally is on Unix-alikes. How do I set this variable (either by commandline or in R.app for Mac)? Sorry if this sounds like a very basic question, but I could not find the answer anywhere else. ?Sys.putenv for how to do it from R. help.search(environment variable) got me there. -- Brian D. Ripley, [EMAIL PROTECTED] Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UKFax: +44 1865 272595 __ R-help@stat.math.ethz.ch mailing list https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] how to set environment variables?
Thanks. Sys.putenv did work, however this has to be set every time I start R.
gs is on my path and works fine under Unix, but I get the following
error when running bitmap (without setting R_GSCMD first):
/bin/sh: line 1: gs: command not found
I assume the problem is related to the fact that I am using the csh
shell, while the new Mac OS X default shell is now bash. So I guess
my .csh path settings are ignored by R calling bash. I solved the
problem by adding my R_GSCMD settings to the Renviron file
(R_GSCMD=${RGSCMD-'/sw/bin/gs'} in my case). Hope this helps anyone
with the same problem.
Thanks again for your help!
Andreas
At 12:51 +0100 20.10.2005, Prof Brian Ripley wrote:
On Thu, 20 Oct 2005, Andreas Zankl wrote:
The help file of the R bitmap function says that I have to set the
environment variable R_GSCMD to the path of my Ghostscript
installation.
Actually, it does not say that. It says you _can_ specify the path
to your executable (not the installation) that way. It will work
without doing so if the executable 'gs' (on a Unix-alike) is on your
path, which it normally is on Unix-alikes.
How do I set this variable (either by commandline or in
R.app for Mac)? Sorry if this sounds like a very basic question, but
I could not find the answer anywhere else.
?Sys.putenv for how to do it from R. help.search(environment
variable) got me there.
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
--
PLEASE NOTE MY NEW EMAIL ADDRESS: [EMAIL PROTECTED]
--
Andreas Zankl, MD
Division of Molecular Pediatrics
Clinique Infantile 02/50
CHUV
Avenue Pierre Decker 2
CH-1011 Lausanne
Switzerland
Phone: +41-21-3143778
Fax: +41-21-3143546
Email: [EMAIL PROTECTED]
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] how to set environment variables?
See the first paragraph of ?Startup.
Andy
From: Andreas Zankl
Thanks. Sys.putenv did work, however this has to be set every
time I start R.
gs is on my path and works fine under Unix, but I get the following
error when running bitmap (without setting R_GSCMD first):
/bin/sh: line 1: gs: command not found
I assume the problem is related to the fact that I am using the csh
shell, while the new Mac OS X default shell is now bash. So I guess
my .csh path settings are ignored by R calling bash. I solved the
problem by adding my R_GSCMD settings to the Renviron file
(R_GSCMD=${RGSCMD-'/sw/bin/gs'} in my case). Hope this helps anyone
with the same problem.
Thanks again for your help!
Andreas
At 12:51 +0100 20.10.2005, Prof Brian Ripley wrote:
On Thu, 20 Oct 2005, Andreas Zankl wrote:
The help file of the R bitmap function says that I have to set the
environment variable R_GSCMD to the path of my Ghostscript
installation.
Actually, it does not say that. It says you _can_ specify the path
to your executable (not the installation) that way. It will work
without doing so if the executable 'gs' (on a Unix-alike) is on your
path, which it normally is on Unix-alikes.
How do I set this variable (either by commandline or in
R.app for Mac)? Sorry if this sounds like a very basic question, but
I could not find the answer anywhere else.
?Sys.putenv for how to do it from R. help.search(environment
variable) got me there.
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
--
PLEASE NOTE MY NEW EMAIL ADDRESS: [EMAIL PROTECTED]
--
Andreas Zankl, MD
Division of Molecular Pediatrics
Clinique Infantile 02/50
CHUV
Avenue Pierre Decker 2
CH-1011 Lausanne
Switzerland
Phone: +41-21-3143778
Fax: +41-21-3143546
Email: [EMAIL PROTECTED]
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide!
http://www.R-project.org/posting-guide.html
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
Re: [R] how to set environment variables?
Renviron is in an odd places on Macs:
/Library/Frameworks/R.framework/Versions/2.1.1/Resources/etc/Renviron
As suggested in ?Startup, I added the R_GSCMD variable to
Renviron.site instead.
Thanks for your help
Andreas
See the first paragraph of ?Startup.
If this is literally `Renviron' (not ~/.Renviron or Renviron.site)
see also the Note in that help file.
Andy
From: Andreas Zankl
Thanks. Sys.putenv did work, however this has to be set every
time I start R.
gs is on my path and works fine under Unix, but I get the following
error when running bitmap (without setting R_GSCMD first):
/bin/sh: line 1: gs: command not found
I assume the problem is related to the fact that I am using the csh
shell, while the new Mac OS X default shell is now bash. So I guess
my .csh path settings are ignored by R calling bash. I solved the
problem by adding my R_GSCMD settings to the Renviron file
(R_GSCMD=${RGSCMD-'/sw/bin/gs'} in my case). Hope this helps anyone
with the same problem.
Thanks again for your help!
Andreas
At 12:51 +0100 20.10.2005, Prof Brian Ripley wrote:
On Thu, 20 Oct 2005, Andreas Zankl wrote:
The help file of the R bitmap function says that I have to set the
environment variable R_GSCMD to the path of my Ghostscript
installation.
Actually, it does not say that. It says you _can_ specify the path
to your executable (not the installation) that way. It will work
without doing so if the executable 'gs' (on a Unix-alike) is on your
path, which it normally is on Unix-alikes.
How do I set this variable (either by commandline or in
R.app for Mac)? Sorry if this sounds like a very basic question, but
I could not find the answer anywhere else.
?Sys.putenv for how to do it from R. help.search(environment
variable) got me there.
--
Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
--
PLEASE NOTE MY NEW EMAIL ADDRESS: [EMAIL PROTECTED]
--
Andreas Zankl, MD
Division of Molecular Pediatrics
Clinique Infantile 02/50
CHUV
Avenue Pierre Decker 2
CH-1011 Lausanne
Switzerland
Phone: +41-21-3143778
Fax: +41-21-3143546
Email: [EMAIL PROTECTED]
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide!
http://www.R-project.org/posting-guide.html
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Brian D. Ripley, [EMAIL PROTECTED]
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UKFax: +44 1865 272595
__
R-help@stat.math.ethz.ch mailing list
https://stat.ethz.ch/mailman/listinfo/r-help
PLEASE do read the posting guide! http://www.R-project.org/posting-guide.html
