[R-pkg-devel] First time CRAN submission
Hi All, I am trying to submit my first package to CRAN. I already went through few iterations and corrected most of the problems (I believe). However I still getting two issues that I cannot figure out hoe to fix. I will list them here below, hoping for some help. You can find the package that I am trying to submit at https://gitlab.com/ingfimo/modello. With respect to the Windows test this is the output that has been returned to me: > * using log directory 'd:/RCompile/CRANincoming/R-devel/modello.Rcheck' > * using R Under development (unstable) (2020-12-09 r79601) > * using platform: x86_64-w64-mingw32 (64-bit) > * using session charset: ISO8859-1 > * checking for file 'modello/DESCRIPTION' ... OK > * this is package 'modello' version '0.1' > * checking CRAN incoming feasibility ... NOTE > Maintainer: 'Filippo Monari ' > > New submission > > Possibly mis-spelled words in DESCRIPTION: > Modello (2:8, 12:27, 13:22, 18:55) > openMP (13:98) > > The Title field starts with the package name. > The Title field should be in title case. Current version is: > 'Modello: a homemade Deep Learning library' > In title case that is: > 'Modello: a Homemade Deep Learning Library' > * checking package namespace information ... OK > * checking package dependencies ... OK > * checking if this is a source package ... OK > * checking if there is a namespace ... OK > * checking for hidden files and directories ... OK > * checking for portable file names ... OK > * checking serialization versions ... OK > * checking whether package 'modello' can be installed ... OK > * checking installed package size ... OK > * checking package directory ... OK > * checking for future file timestamps ... OK > * checking DESCRIPTION meta-information ... OK > * checking top-level files ... OK > * checking for left-over files ... OK > * checking index information ... OK > * checking package subdirectories ... OK > * checking R files for non-ASCII characters ... OK > * checking R files for syntax errors ... OK > * loading checks for arch 'i386' > ** checking whether the package can be loaded ... ERROR > Loading this package had a fatal error status code 1 > Loading log: > Error: package 'modello' is not installed for 'arch = i386' > Execution halted > ** DONE > Status: 1 ERROR, 1 NOTE > > In particular the package compiles correctly but I stil get the error "package 'modello' is not installed for 'arch = i386'" With respect to the Debian test the warning that makes the submission to fail is the following: > * checking whether package ‘modello’ can be installed ... [33s/32s] WARNING > Found the following significant warnings: > Warning: Type specified for intrinsic function ‘size’ at (1) is ignored > [-Wsurprising] > See ‘/srv/hornik/tmp/CRAN/modello.Rcheck/00install.out’ for details. which relates to few workings of the fololwing kind: > Warning: Type specified for intrinsic function ‘size’ at (1) is ignored > [-Wsurprising] and > Warning: ‘ss.dim[1].stride’ may be used uninitialized in this function > [-Wmaybe-uninitialized] I cannot reproduce these warnings on my environments, even by using -Wall and -Wextra during the compilation. Googling the topic I found that it could be bug in an old version of gcc ( https://gcc.gnu.org/bugzilla/show_bug.cgi?id=77504). Any advice on how to further proceed with the submission are welcome. Regards, Filippo [[alternative HTML version deleted]] __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] Vignette fonts problem
I have built and checked eha_2.8.2 with R-4.0.3 and everything is OK.
However, checking with the current (2020-12-12) R-devel, I get:
--- re-building ‘tpchreg.Rmd’ using rmarkdown
Quitting from lines 103-108 (tpchreg.Rmd)
Error: processing vignette 'tpchreg.Rmd' failed with diagnostics:
X11 font -adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*, face 1 at size 12
could not be loaded
--- failed re-building ‘tpchreg.Rmd’
In 'tpchreg.Rmd' I have:
---
title: "Proportional hazards regression with tabular data"
author: "Göran Broström"
package: eha
date: "`r Sys.Date()`"
slug: eha
link-citations: yes
output:
bookdown::html_document2:
toc: yes
toc_depth: 2
pkgdown:
as_is: true
bibliography: mybib.bib
vignette: >
%\VignetteIndexEntry{Proportional hazards regression with tabular data}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
\usepackage[utf8]{inputenc}
---
and the lines 103-108 are:
```{r glmbasefig, fig.cap = "Age-specific mortality, Sweden 1968-2019.
Poisson regression."}
oldpar <- par(las = 1, lwd = 1.5, mfrow = c(1, 2))
plot(0:(n-1), haz, type = "s", main = "log(hazards)",
xlab = "Age", ylab = "", log = "y")
plot(0:(n-1), haz, type = "s", main = "hazards",
xlab = "Age", ylab = "Deaths / Year")
```
So, why do I get the fonts error now (and not earlier) and where can I
find the fonts? (Ubuntu 20.04). And will it help, so the package is
accepted by CRAN?
Thanks, Göran
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Re: [R-pkg-devel] Vignette fonts problem
Update: I tried this on another machine with the same setup (I thought),
and no problem with the R-devel check!
Must find those fonts ...
On CRAN soon!
Göran
On 2020-12-13 18:33, Göran Broström wrote:
I have built and checked eha_2.8.2 with R-4.0.3 and everything is OK.
However, checking with the current (2020-12-12) R-devel, I get:
--- re-building ‘tpchreg.Rmd’ using rmarkdown
Quitting from lines 103-108 (tpchreg.Rmd)
Error: processing vignette 'tpchreg.Rmd' failed with diagnostics:
X11 font -adobe-helvetica-%s-%s-*-*-%d-*-*-*-*-*-*-*, face 1 at size 12
could not be loaded
--- failed re-building ‘tpchreg.Rmd’
In 'tpchreg.Rmd' I have:
---
title: "Proportional hazards regression with tabular data"
author: "Göran Broström"
package: eha
date: "`r Sys.Date()`"
slug: eha
link-citations: yes
output:
bookdown::html_document2:
toc: yes
toc_depth: 2
pkgdown:
as_is: true
bibliography: mybib.bib
vignette: >
%\VignetteIndexEntry{Proportional hazards regression with tabular data}
%\VignetteEngine{knitr::rmarkdown}
%\VignetteEncoding{UTF-8}
\usepackage[utf8]{inputenc}
---
and the lines 103-108 are:
```{r glmbasefig, fig.cap = "Age-specific mortality, Sweden 1968-2019.
Poisson regression."}
oldpar <- par(las = 1, lwd = 1.5, mfrow = c(1, 2))
plot(0:(n-1), haz, type = "s", main = "log(hazards)",
xlab = "Age", ylab = "", log = "y")
plot(0:(n-1), haz, type = "s", main = "hazards",
xlab = "Age", ylab = "Deaths / Year")
```
So, why do I get the fonts error now (and not earlier) and where can I
find the fonts? (Ubuntu 20.04). And will it help, so the package is
accepted by CRAN?
Thanks, Göran
__
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__
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