Re: [R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails
Please report. Best, Uwe Ligges On 11.01.2019 22:15, Sam Albers wrote: Oh you are totally right. And similarly, an .rds file bonks with R CMD build: $ R CMD build foo.rds * checking for file 'foo.rds/DESCRIPTION' ... OK * preparing 'foo.rds': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories Warning in gzfile(file, "rb") : cannot open compressed file 'foo.rds', probable reason 'Permission denied' Error in gzfile(file, "rb") : cannot open the connection Execution halted However this seems like a bug doesn't it? I am able to install a *.rds or *.rdata package but unable to build it. Seems like a) I should be able to install and b) these could be added to the list of unavailable package names. Asking in the context of whether this is worth reporting as a bug. Sam On Fri, Jan 11, 2019 at 12:00 PM Hong Ooi wrote: It looks like the ".rdata" in your package name is confusing R CMD BUILD into thinking there is a .rdata file involved. Consider renaming it to "bcmaps.data" or something similar. -Original Message- From: R-package-devel On Behalf Of Sam Albers Sent: Friday, 11 January, 2019 2:07 PM To: r-package-devel@r-project.org Subject: [R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails Hello all, I am experiencing some issues with building a package that we are hosting on GitHub. The package itself is quite large. It is a data package with a bunch of spatial files stored as .rds files. The repo is located here: https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbcgov%2Fbcmaps.rdatadata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=GosuFnTADrpxapDMNQSMxKoI9B4aPtIw7LwPwoCmYxU%3Dreserved=0 If we clone that package to local machine via: git clone https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbcgov%2Fbcmaps.rdatadata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=GosuFnTADrpxapDMNQSMxKoI9B4aPtIw7LwPwoCmYxU%3Dreserved=0 The first oddity is that the package installs successfully using this: $ R CMD INSTALL "./bcmaps.rdata" But fails when I try to build the package: $ R CMD BUILD "./bcmaps.rdata" * checking for file './bcmaps.rdata/DESCRIPTION' ... OK * preparing 'bcmaps.rdata': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added Warning in gzfile(file, "rb") : cannot open compressed file 'bcmaps.rdata', probable reason 'Permission denied' Error in gzfile(file, "rb") : cannot open the connection Execution halted The second oddity is that if I remove the . from the Package name in the DESCRIPTION file, the build proceeds smoothly: $ R CMD build "./bcmaps.rdata" * checking for file './bcmaps.rdata/DESCRIPTION' ... OK * preparing 'bcmapsrdata': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'bcmapsrdata_0.2.0.tar.gz' I am assuming that R CMD install builds the package internally so I find it confusing that I am not able to build it myself. Similarly confusing is the lack of a . in the package name indicative of anything? Does anyone have any idea what's going on here? Am I missing something obvious? Thanks in advance, Sam __ R-package-devel@r-project.org mailing list https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-package-develdata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=0r%2FFfRH6eYqRPLAAFLprWAttPip02VKV0GIqBOtVhI8%3Dreserved=0 __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails
Oh you are totally right. And similarly, an .rds file bonks with R CMD build: $ R CMD build foo.rds * checking for file 'foo.rds/DESCRIPTION' ... OK * preparing 'foo.rds': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories Warning in gzfile(file, "rb") : cannot open compressed file 'foo.rds', probable reason 'Permission denied' Error in gzfile(file, "rb") : cannot open the connection Execution halted However this seems like a bug doesn't it? I am able to install a *.rds or *.rdata package but unable to build it. Seems like a) I should be able to install and b) these could be added to the list of unavailable package names. Asking in the context of whether this is worth reporting as a bug. Sam On Fri, Jan 11, 2019 at 12:00 PM Hong Ooi wrote: > > It looks like the ".rdata" in your package name is confusing R CMD BUILD into > thinking there is a .rdata file involved. Consider renaming it to > "bcmaps.data" or something similar. > > > -Original Message- > From: R-package-devel On Behalf Of > Sam Albers > Sent: Friday, 11 January, 2019 2:07 PM > To: r-package-devel@r-project.org > Subject: [R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails > > Hello all, > > I am experiencing some issues with building a package that we are hosting on > GitHub. The package itself is quite large. It is a data package with a bunch > of spatial files stored as .rds files. > > The repo is located here: > https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbcgov%2Fbcmaps.rdatadata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=GosuFnTADrpxapDMNQSMxKoI9B4aPtIw7LwPwoCmYxU%3Dreserved=0 > > If we clone that package to local machine via: > git clone > https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbcgov%2Fbcmaps.rdatadata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=GosuFnTADrpxapDMNQSMxKoI9B4aPtIw7LwPwoCmYxU%3Dreserved=0 > > The first oddity is that the package installs successfully using this: > > $ R CMD INSTALL "./bcmaps.rdata" > > But fails when I try to build the package: > > $ R CMD BUILD "./bcmaps.rdata" > * checking for file './bcmaps.rdata/DESCRIPTION' ... OK > * preparing 'bcmaps.rdata': > * checking DESCRIPTION meta-information ... OK > * checking for LF line-endings in source and make files and shell scripts > * checking for empty or unneeded directories > * looking to see if a 'data/datalist' file should be added Warning in > gzfile(file, "rb") : > cannot open compressed file 'bcmaps.rdata', probable reason 'Permission > denied' > Error in gzfile(file, "rb") : cannot open the connection Execution halted > > > The second oddity is that if I remove the . from the Package name in the > DESCRIPTION file, the build proceeds smoothly: > > $ R CMD build "./bcmaps.rdata" > * checking for file './bcmaps.rdata/DESCRIPTION' ... OK > * preparing 'bcmapsrdata': > * checking DESCRIPTION meta-information ... OK > * checking for LF line-endings in source and make files and shell scripts > * checking for empty or unneeded directories > * looking to see if a 'data/datalist' file should be added > * building 'bcmapsrdata_0.2.0.tar.gz' > > I am assuming that R CMD install builds the package internally so I find it > confusing that I am not able to build it myself. Similarly confusing is the > lack of a . in the package name indicative of anything? > > Does anyone have any idea what's going on here? Am I missing something > obvious? > > Thanks in advance, > > Sam > > __ > R-package-devel@r-project.org mailing list > https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-package-develdata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=0r%2FFfRH6eYqRPLAAFLprWAttPip02VKV0GIqBOtVhI8%3Dreserved=0 __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
Re: [R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails
--- Begin Message --- It looks like the ".rdata" in your package name is confusing R CMD BUILD into thinking there is a .rdata file involved. Consider renaming it to "bcmaps.data" or something similar. -Original Message- From: R-package-devel On Behalf Of Sam Albers Sent: Friday, 11 January, 2019 2:07 PM To: r-package-devel@r-project.org Subject: [R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails Hello all, I am experiencing some issues with building a package that we are hosting on GitHub. The package itself is quite large. It is a data package with a bunch of spatial files stored as .rds files. The repo is located here: https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbcgov%2Fbcmaps.rdatadata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=GosuFnTADrpxapDMNQSMxKoI9B4aPtIw7LwPwoCmYxU%3Dreserved=0 If we clone that package to local machine via: git clone https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fgithub.com%2Fbcgov%2Fbcmaps.rdatadata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=GosuFnTADrpxapDMNQSMxKoI9B4aPtIw7LwPwoCmYxU%3Dreserved=0 The first oddity is that the package installs successfully using this: $ R CMD INSTALL "./bcmaps.rdata" But fails when I try to build the package: $ R CMD BUILD "./bcmaps.rdata" * checking for file './bcmaps.rdata/DESCRIPTION' ... OK * preparing 'bcmaps.rdata': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added Warning in gzfile(file, "rb") : cannot open compressed file 'bcmaps.rdata', probable reason 'Permission denied' Error in gzfile(file, "rb") : cannot open the connection Execution halted The second oddity is that if I remove the . from the Package name in the DESCRIPTION file, the build proceeds smoothly: $ R CMD build "./bcmaps.rdata" * checking for file './bcmaps.rdata/DESCRIPTION' ... OK * preparing 'bcmapsrdata': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'bcmapsrdata_0.2.0.tar.gz' I am assuming that R CMD install builds the package internally so I find it confusing that I am not able to build it myself. Similarly confusing is the lack of a . in the package name indicative of anything? Does anyone have any idea what's going on here? Am I missing something obvious? Thanks in advance, Sam __ R-package-devel@r-project.org mailing list https://nam06.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-package-develdata=02%7C01%7Chongooi%40microsoft.com%7C6ac8c309c7b84a8de4d208d677fef252%7C72f988bf86f141af91ab2d7cd011db47%7C1%7C1%7C636828334223679364sdata=0r%2FFfRH6eYqRPLAAFLprWAttPip02VKV0GIqBOtVhI8%3Dreserved=0 --- End Message --- __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
[R-pkg-devel] R CMD INSTALL succeeds while R CMD BUILD fails
Hello all, I am experiencing some issues with building a package that we are hosting on GitHub. The package itself is quite large. It is a data package with a bunch of spatial files stored as .rds files. The repo is located here: https://github.com/bcgov/bcmaps.rdata If we clone that package to local machine via: git clone https://github.com/bcgov/bcmaps.rdata The first oddity is that the package installs successfully using this: $ R CMD INSTALL "./bcmaps.rdata" But fails when I try to build the package: $ R CMD BUILD "./bcmaps.rdata" * checking for file './bcmaps.rdata/DESCRIPTION' ... OK * preparing 'bcmaps.rdata': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added Warning in gzfile(file, "rb") : cannot open compressed file 'bcmaps.rdata', probable reason 'Permission denied' Error in gzfile(file, "rb") : cannot open the connection Execution halted The second oddity is that if I remove the . from the Package name in the DESCRIPTION file, the build proceeds smoothly: $ R CMD build "./bcmaps.rdata" * checking for file './bcmaps.rdata/DESCRIPTION' ... OK * preparing 'bcmapsrdata': * checking DESCRIPTION meta-information ... OK * checking for LF line-endings in source and make files and shell scripts * checking for empty or unneeded directories * looking to see if a 'data/datalist' file should be added * building 'bcmapsrdata_0.2.0.tar.gz' I am assuming that R CMD install builds the package internally so I find it confusing that I am not able to build it myself. Similarly confusing is the lack of a . in the package name indicative of anything? Does anyone have any idea what's going on here? Am I missing something obvious? Thanks in advance, Sam __ R-package-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/r-package-devel
